Conservation of cofitness between PP_5145 and PP_2148 in Pseudomonas putida KT2440

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5145 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) 1.0 PP_2148 transcription-repair coupling factor 0.43 9
Pseudomonas fluorescens FW300-N1B4 0.94 Pf1N1B4_2284 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated 0.87 Pf1N1B4_3916 Transcription-repair coupling factor low > 87
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_953 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated 0.87 PfGW456L13_4027 Transcription-repair coupling factor low > 87
Pseudomonas sp. RS175 0.93 PFR28_04830 Phosphoenolpyruvate-dependent phosphotransferase system 0.89 PFR28_01123 Transcription-repair-coupling factor 0.37 47
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_10350 phosphoenolpyruvate-protein phosphotransferase 0.89 AO356_02270 transcription-repair coupling factor low > 104
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_3942 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated 0.89 Pf6N2E2_2278 Transcription-repair coupling factor low > 103
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_08465 phosphoenolpyruvate-protein phosphotransferase 0.89 AO353_00435 transcription-repair coupling factor low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.93 Psyr_4842 Phosphoenolpyruvate-protein phosphotransferase 0.87 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas syringae pv. syringae B728a 0.93 Psyr_4842 Phosphoenolpyruvate-protein phosphotransferase 0.87 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas fluorescens SBW25-INTG 0.92 PFLU_RS28645 phosphoenolpyruvate--protein phosphotransferase 0.87 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas fluorescens SBW25 0.92 PFLU_RS28645 phosphoenolpyruvate--protein phosphotransferase 0.87 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas simiae WCS417 0.91 PS417_26985 phosphoenolpyruvate-protein phosphotransferase 0.87 PS417_07635 transcription-repair coupling factor low > 88
Pseudomonas sp. S08-1 0.87 OH686_11430 Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated 0.84 OH686_21990 transcription-repair coupling factor low > 80
Pseudomonas stutzeri RCH2 0.86 Psest_3862 phosphoenolpyruvate-protein phosphotransferase 0.85 Psest_1653 transcription-repair coupling factor (mfd) low > 67
Marinobacter adhaerens HP15 0.68 HP15_463 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain protein 0.62 HP15_2257 transcription-repair-coupling factor low > 73
Acinetobacter radioresistens SK82 0.53 MPMX26_00341 Phosphoenolpyruvate-dependent phosphotransferase system 0.52 MPMX26_01319 Transcription-repair-coupling factor low > 36
Alteromonas macleodii MIT1002 0.45 MIT1002_00648 Phosphoenolpyruvate-protein phosphotransferase 0.57 MIT1002_01646 Transcription-repair-coupling factor low > 70
Shewanella amazonensis SB2B 0.41 Sama_0864 phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq) 0.55 Sama_1330 transcription-repair coupling factor (RefSeq) low > 62
Shewanella loihica PV-4 0.41 Shew_1039 phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq) 0.55 Shew_1630 transcription-repair coupling factor (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_03525 phosphoenolpyruvate-protein phosphotransferase PtsP 0.56 CSW01_09445 transcription-repair coupling factor low > 62
Shewanella sp. ANA-3 0.41 Shewana3_3042 phosphoenolpyruvate-protein phosphotransferase PtsP (RefSeq) 0.55 Shewana3_2289 transcription-repair coupling factor (RefSeq) low > 73
Shewanella oneidensis MR-1 0.40 SO1332 ptsP phosphoenolpyruvate-protein phosphotransferase PtsP (NCBI ptt file) 0.55 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) low > 76
Rahnella sp. WP5 0.40 EX31_RS13200 phosphoenolpyruvate--protein phosphotransferase 0.55 EX31_RS24520 transcription-repair coupling factor low > 89
Serratia liquefaciens MT49 0.39 IAI46_20450 phosphoenolpyruvate--protein phosphotransferase 0.56 IAI46_10320 transcription-repair coupling factor low > 86
Erwinia tracheiphila SCR3 0.39 LU632_RS06110 ptsP phosphoenolpyruvate--protein phosphotransferase 0.54 LU632_RS14730 mfd transcription-repair coupling factor low > 74
Escherichia fergusonii Becca 0.39 EFB2_01055 Phosphoenolpyruvate-dependent phosphotransferase system 0.55 EFB2_02861 Transcription-repair-coupling factor low > 86
Escherichia coli ECRC98 0.39 JDDGAC_23670 ptsP phosphoenolpyruvate--protein phosphotransferase 0.55 JDDGAC_07130 mfd transcription-repair coupling factor — —
Escherichia coli ECRC101 0.39 OKFHMN_20005 ptsP phosphoenolpyruvate--protein phosphotransferase 0.55 OKFHMN_03470 mfd transcription-repair coupling factor — —
Escherichia coli ECRC101 0.39 MCAODC_10530 ptsP phosphoenolpyruvate--protein phosphotransferase 0.55 MCAODC_22830 mfd transcription-repair coupling factor — —
Escherichia coli ECRC99 0.39 KEDOAH_08125 ptsP phosphoenolpyruvate--protein phosphotransferase 0.55 KEDOAH_24285 mfd transcription-repair coupling factor — —
Escherichia coli ECRC102 0.39 NIAGMN_17775 ptsP phosphoenolpyruvate--protein phosphotransferase 0.55 NIAGMN_24360 mfd transcription-repair coupling factor — —
Escherichia coli ECOR27 0.39 NOLOHH_11890 ptsP phosphoenolpyruvate--protein phosphotransferase 0.55 NOLOHH_20995 mfd transcription-repair coupling factor 0.76 16
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00901 Phosphoenolpyruvate-dependent phosphotransferase system 0.55 OHPLBJKB_02552 Transcription-repair-coupling factor 0.58 51
Escherichia coli ECRC62 0.39 BNILDI_10370 ptsP phosphoenolpyruvate--protein phosphotransferase 0.55 BNILDI_19160 mfd transcription-repair coupling factor — —
Escherichia coli ECOR38 0.39 HEPCGN_19260 ptsP phosphoenolpyruvate--protein phosphotransferase 0.55 HEPCGN_24015 mfd transcription-repair coupling factor low > 85
Escherichia coli BL21 0.39 ECD_02677 PEP-protein phosphotransferase enzyme I; GAF domain containing protein 0.55 ECD_01110 transcription-repair coupling factor low > 60
Klebsiella michiganensis M5al 0.39 BWI76_RS23270 phosphoenolpyruvate--protein phosphotransferase PtsP 0.55 BWI76_RS11205 transcription-repair coupling factor low > 92
Escherichia coli BW25113 0.39 b2829 ptsP fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) 0.55 b1114 mfd transcription-repair coupling factor (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF1311 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated 0.55 GFF3397 Transcription-repair coupling factor 0.95 2
Pantoea sp. MT58 0.38 IAI47_03920 phosphoenolpyruvate--protein phosphotransferase 0.55 IAI47_11975 transcription-repair coupling factor low > 76
Enterobacter asburiae PDN3 0.38 EX28DRAFT_2904 phosphoenolpyruvate-protein phosphotransferase 0.54 EX28DRAFT_1816 transcription-repair coupling factor (mfd) low > 76
Enterobacter sp. TBS_079 0.38 MPMX20_03692 Phosphoenolpyruvate-dependent phosphotransferase system 0.54 MPMX20_01795 Transcription-repair-coupling factor 0.24 47
Dickeya dadantii 3937 0.38 DDA3937_RS04950 phosphoenolpyruvate--protein phosphotransferase 0.55 DDA3937_RS13000 transcription-repair coupling factor low > 74
Dickeya dianthicola 67-19 0.38 HGI48_RS04960 phosphoenolpyruvate--protein phosphotransferase 0.55 HGI48_RS13065 transcription-repair coupling factor 0.56 47
Dickeya dianthicola ME23 0.38 DZA65_RS05300 phosphoenolpyruvate--protein phosphotransferase 0.55 DZA65_RS13530 transcription-repair coupling factor low > 75
Pectobacterium carotovorum WPP14 0.37 HER17_RS16580 phosphoenolpyruvate--protein phosphotransferase 0.55 HER17_RS08775 transcription-repair coupling factor low > 75
Rhodopseudomonas palustris CGA009 0.29 TX73_003130 phosphoenolpyruvate--protein phosphotransferase 0.33 TX73_013805 transcription-repair coupling factor low > 86
Sinorhizobium meliloti 1021 0.27 SMc02437 phosphoenolpyruvate phosphotransferase PTSP (enzyme I-Ntr) protein 0.32 SMc04450 transcription-repair coupling factor — —
Rhizobium sp. OAE497 0.27 ABIE40_RS17300 phosphoenolpyruvate--protein phosphotransferase 0.32 ABIE40_RS09310 transcription-repair coupling factor — —
Bosea sp. OAE506 0.26 ABIE41_RS23820 phosphoenolpyruvate--protein phosphotransferase 0.33 ABIE41_RS15825 transcription-repair coupling factor low > 77
Agrobacterium fabrum C58 0.26 Atu4173 phosphoenolpyruvate-protein phosphotransferase 0.33 Atu1778 transcription-repair coupling factor low > 89
Azospirillum sp. SherDot2 0.26 MPMX19_02675 Phosphoenolpyruvate-dependent phosphotransferase system 0.33 MPMX19_00876 Transcription-repair-coupling factor low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.26 A4249_RS14485 phosphoenolpyruvate--protein phosphotransferase 0.34 A4249_RS04775 transcription-repair coupling factor low > 48
Magnetospirillum magneticum AMB-1 0.26 AMB_RS08150 phosphoenolpyruvate--protein phosphotransferase 0.33 AMB_RS12390 transcription-repair coupling factor low > 64
Rhodospirillum rubrum S1H 0.25 Rru_A0745 PTSINtr with GAF domain, PtsP (NCBI) 0.33 Rru_A1726 Transcription-repair coupling factor (NCBI) 0.59 32
Caulobacter crescentus NA1000 0.25 CCNA_00892 phosphoenolpyruvate-protein phosphotransferase PtsP 0.34 CCNA_01920 transcription-repair coupling factor Mfd low > 66
Caulobacter crescentus NA1000 Δfur 0.25 CCNA_00892 phosphoenolpyruvate-protein phosphotransferase PtsP 0.34 CCNA_01920 transcription-repair coupling factor Mfd low > 67
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_2514 phosphoenolpyruvate-protein phosphotransferase 0.33 Ga0059261_0960 transcription-repair coupling factor (mfd) low > 68
Phaeobacter inhibens DSM 17395 0.21 PGA1_c23500 phosphoenolpyruvate-protein phosphotransferase PtsP 0.33 PGA1_c14920 transcription-repair-coupling factor Mfd low > 62
Dinoroseobacter shibae DFL-12 0.21 Dshi_2062 PTSINtr with GAF domain, PtsP (RefSeq) 0.33 Dshi_1561 transcription-repair coupling factor (RefSeq) low > 64

Not shown: 2 genomes with orthologs for PP_5145 only; 28 genomes with orthologs for PP_2148 only