Conservation of cofitness between PP_0951 and PP_0396 in Pseudomonas putida KT2440

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0951 Ribosome hibernation promoting factor 1.0 PP_0396 conserved protein of unknown function 0.69 2
Pseudomonas simiae WCS417 0.83 PS417_04340 ribosome hibernation promoting factor HPF 0.89 PS417_25835 hypothetical protein 0.45 5
Pseudomonas fluorescens GW456-L13 0.81 PfGW456L13_5015 Ribosome hibernation protein YhbH 0.89 PfGW456L13_1195 FIG002076: hypothetical protein low > 87
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_07040 hypothetical protein 0.89 AO356_14310 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) low > 104
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_1081 Ribosome hibernation protein YhbH 0.89 Pf1N1B4_2522 FIG002076: hypothetical protein low > 87
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_3268 Ribosome hibernation protein YhbH 0.89 Pf6N2E2_4800 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) low > 103
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_05185 hypothetical protein 0.89 AO353_07340 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 101
Pseudomonas sp. RS175 0.80 PFR28_00172 Ribosome hibernation promoting factor 0.89 PFR28_04069 hypothetical protein low > 88
Pseudomonas syringae pv. syringae B728a 0.78 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P 0.89 Psyr_4632 Protein of unknown function DUF444 low > 86
Pseudomonas sp. S08-1 0.78 OH686_08550 Ribosome hibernation promoting factor Hpf 0.87 OH686_15015 UPF0229 protein YeaH low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.78 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P 0.89 Psyr_4632 Protein of unknown function DUF444 low > 86
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS04395 ribosome-associated translation inhibitor RaiA 0.89 PFLU_RS27490 YeaH/YhbH family protein low > 109
Pseudomonas fluorescens SBW25 0.70 PFLU_RS04395 ribosome-associated translation inhibitor RaiA 0.89 PFLU_RS27490 YeaH/YhbH family protein low > 109
Pseudomonas stutzeri RCH2 0.66 Psest_3314 ribosomal subunit interface protein 0.86 Psest_3673 Uncharacterized conserved protein low > 67
Shewanella loihica PV-4 0.63 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) 0.55 Shew_1832 hypothetical protein (RefSeq) low > 60
Marinobacter adhaerens HP15 0.62 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA 0.65 HP15_2934 protein YeaH low > 73
Alteromonas macleodii MIT1002 0.60 MIT1002_00826 Ribosome hibernation promoting factor 0.59 MIT1002_01232 hypothetical protein low > 70
Shewanella amazonensis SB2B 0.60 Sama_3089 ribosomal subunit interface protein (RefSeq) 0.54 Sama_1922 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) low > 62
Shewanella sp. ANA-3 0.59 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) 0.52 Shewana3_1637 hypothetical protein (RefSeq) low > 73
Rahnella sp. WP5 0.58 EX31_RS12395 ribosome hibernation promoting factor 0.56 EX31_RS06255 YeaH/YhbH family protein low > 89
Shewanella oneidensis MR-1 0.58 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) 0.55 SO2883 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Pectobacterium carotovorum WPP14 0.56 HER17_RS20065 ribosome hibernation promoting factor 0.57 HER17_RS11155 YeaH/YhbH family protein low > 75
Serratia liquefaciens MT49 0.55 IAI46_22475 ribosome hibernation promoting factor 0.56 IAI46_14380 YeaH/YhbH family protein low > 86
Erwinia tracheiphila SCR3 0.53 LU632_RS21285 hpf ribosome hibernation promoting factor 0.55 LU632_RS13015 YeaH/YhbH family protein low > 74
Pantoea sp. MT58 0.53 IAI47_17190 ribosome hibernation promoting factor 0.56 IAI47_08920 YeaH/YhbH family protein low > 76
Escherichia coli ECOR38 0.53 HEPCGN_16810 Ribosome hibernation promoting factor 0.56 HEPCGN_05095 yeaH UPF0229 protein YeaH low > 85
Escherichia coli ECRC98 0.53 JDDGAC_21560 Ribosome hibernation promoting factor 0.56 JDDGAC_01280 yeaH UPF0229 protein YeaH — —
Escherichia coli ECRC102 0.53 NIAGMN_15695 Ribosome hibernation promoting factor 0.56 NIAGMN_01360 yeaH UPF0229 protein YeaH — —
Escherichia coli ECRC101 0.53 OKFHMN_17935 Ribosome hibernation promoting factor 0.56 OKFHMN_26705 yeaH UPF0229 protein YeaH — —
Escherichia coli ECRC101 0.53 MCAODC_08455 Ribosome hibernation promoting factor 0.56 MCAODC_18705 yeaH UPF0229 protein YeaH — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_00497 Ribosome hibernation promoting factor 0.56 OHPLBJKB_01948 hypothetical protein low > 73
Escherichia coli ECRC62 0.53 BNILDI_01800 Ribosome hibernation promoting factor 0.56 BNILDI_16020 yeaH UPF0229 protein YeaH — —
Escherichia fergusonii Becca 0.53 EFB2_00620 Ribosome hibernation promoting factor 0.56 EFB2_02210 hypothetical protein low > 86
Escherichia coli ECRC99 0.53 KEDOAH_10215 Ribosome hibernation promoting factor 0.56 KEDOAH_01405 yeaH UPF0229 protein YeaH — —
Escherichia coli ECOR27 0.53 NOLOHH_09735 Ribosome hibernation promoting factor 0.56 NOLOHH_17235 yeaH UPF0229 protein YeaH — —
Escherichia coli Nissle 1917 0.53 ECOLIN_RS18430 ribosome hibernation promoting factor 0.56 ECOLIN_RS09945 YeaH/YhbH family protein 0.44 45
Escherichia coli BW25113 0.53 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) 0.56 b1784 yeaH yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Escherichia coli BL21 0.53 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers 0.56 ECD_01753 UPF0229 family protein — —
Enterobacter asburiae PDN3 0.52 EX28DRAFT_3257 ribosomal subunit interface protein 0.57 EX28DRAFT_1777 Uncharacterized conserved protein low > 76
Enterobacter sp. TBS_079 0.51 MPMX20_04109 Ribosome hibernation promoting factor 0.57 MPMX20_01839 hypothetical protein low > 85
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_12820 ribosome hibernation promoting factor 0.57 CSW01_09385 hypothetical protein low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF2947 Ribosome hibernation protein YhbH 0.56 GFF3472 UPF0229 protein YeaH low > 78
Klebsiella michiganensis M5al 0.51 BWI76_RS25270 ribosome hibernation promoting factor 0.56 BWI76_RS11480 hypothetical protein low > 92
Dickeya dianthicola 67-19 0.51 HGI48_RS01440 ribosome hibernation promoting factor 0.54 HGI48_RS10250 YeaH/YhbH family protein low > 71
Dickeya dadantii 3937 0.51 DDA3937_RS01525 ribosome hibernation promoting factor 0.54 DDA3937_RS10240 YeaH/YhbH family protein 0.46 44
Dickeya dianthicola ME23 0.51 DZA65_RS01505 ribosome hibernation promoting factor 0.54 DZA65_RS10725 YeaH/YhbH family protein low > 75
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS02080 ribosome hibernation promoting factor 0.52 RR42_RS36480 hypothetical protein low > 128
Acidovorax sp. GW101-3H11 0.46 Ac3H11_681 Ribosome hibernation protein YhbH 0.49 Ac3H11_1146 FIG002076: hypothetical protein low > 79
Variovorax sp. SCN45 0.45 GFF7293 Ribosome hibernation promoting factor Hpf 0.46 GFF2934 FIG002076: hypothetical protein low > 127
Variovorax sp. OAS795 0.45 ABID97_RS04490 ribosome-associated translation inhibitor RaiA 0.45 ABID97_RS10265 YeaH/YhbH family protein low > 91
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS07055 ribosome-associated translation inhibitor RaiA 0.50 ABZR87_RS14215 YeaH/YhbH family protein low > 80
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS02900 ribosome hibernation promoting factor 0.54 BPHYT_RS11185 hypothetical protein low > 109
Paraburkholderia graminis OAS925 0.41 ABIE53_000717 putative sigma-54 modulation protein 0.56 ABIE53_002317 uncharacterized sporulation protein YeaH/YhbH (DUF444 family) 0.46 23
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P 0.56 H281DRAFT_05233 hypothetical protein low > 103
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS01750 ribosome-associated translation inhibitor RaiA 0.54 QEN71_RS07380 YeaH/YhbH family protein low > 153

Not shown: 20 genomes with orthologs for PP_0951 only; 8 genomes with orthologs for PP_0396 only