Conservation of cofitness between PP_5337 and PP_0123 in Pseudomonas putida KT2440

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5337 LysR family transcriptional regulator 1.0 PP_0123 DNA polymerase I, 5 0.33 20
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS29810 LysR family transcriptional regulator 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens SBW25 0.91 PFLU_RS29810 LysR family transcriptional regulator 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas simiae WCS417 0.91 PS417_28125 LysR family transcriptional regulator 0.79 PS417_00405 DNA polymerase I — —
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_09945 LysR family transcriptional regulator 0.80 AO353_10930 DNA polymerase I low > 101
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_743 Transcriptional regulator 0.76 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_2026 Transcriptional regulator 0.79 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_5050 transcriptional regulator, LysR family 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_5050 transcriptional regulator, LysR family 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas sp. RS175 0.90 PFR28_04497 HTH-type transcriptional regulator YjiE 0.79 PFR28_04624 DNA polymerase I low > 88
Pseudomonas fluorescens FW300-N2C3 0.90 AO356_11085 LysR family transcriptional regulator 0.80 AO356_11465 DNA polymerase I low > 104
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_4084 Transcriptional regulator 0.80 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) low > 103
Pseudomonas stutzeri RCH2 0.80 Psest_4073 Transcriptional regulator 0.77 Psest_4219 DNA polymerase I — —
Pseudomonas sp. S08-1 0.78 OH686_13320 LysR-family transcriptional regulator 0.77 OH686_12215 DNA polymerase I low > 80
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS19265 LysR family transcriptional regulator 0.53 HSERO_RS02260 DNA polymerase I low > 78
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS29580 LysR family transcriptional regulator 0.52 RR42_RS15050 DNA polymerase I low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF518 Transcriptional regulator 0.45 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Acidovorax sp. GW101-3H11 0.34 Ac3H11_1953 Transcriptional regulator 0.48 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Variovorax sp. OAS795 0.34 ABID97_RS05925 LysR substrate-binding domain-containing protein 0.48 ABID97_RS09180 DNA polymerase I low > 91
Variovorax sp. SCN45 0.33 GFF4595 Transcriptional regulator 0.49 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS07510 LysR family transcriptional regulator 0.52 ABZR87_RS15680 DNA polymerase I low > 80
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS11545 LysR family transcriptional regulator 0.51 RALBFv3_RS03750 DNA polymerase I low > 76
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS33805 LysR substrate-binding domain-containing protein 0.52 QEN71_RS17885 DNA polymerase I — —
Ralstonia solanacearum UW163 0.33 UW163_RS02040 LysR family transcriptional regulator 0.51 UW163_RS09920 DNA polymerase I — —
Ralstonia solanacearum PSI07 0.33 RPSI07_RS21665 LysR family transcriptional regulator 0.51 RPSI07_RS13480 DNA polymerase I low > 81
Ralstonia solanacearum GMI1000 0.32 RS_RS02375 LysR family transcriptional regulator 0.51 RS_RS11195 DNA polymerase I low > 80
Paraburkholderia bryophila 376MFSha3.1 0.32 H281DRAFT_04272 transcriptional regulator, LysR family 0.50 H281DRAFT_06022 DNA polymerase I — —
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS16710 LysR family transcriptional regulator 0.51 BPHYT_RS33610 DNA polymerase I low > 109
Paraburkholderia graminis OAS925 0.32 ABIE53_003512 DNA-binding transcriptional LysR family regulator 0.51 ABIE53_004852 DNA polymerase-1 low > 113
Dickeya dianthicola ME23 0.31 DZA65_RS07765 hypochlorite stress DNA-binding transcriptional regulator HypT 0.59 DZA65_RS22235 DNA polymerase I — —
Escherichia coli Nissle 1917 0.31 ECOLIN_RS24870 hypochlorite stress DNA-binding transcriptional regulator HypT 0.61 ECOLIN_RS22270 DNA polymerase I — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_03739 HTH-type transcriptional regulator YjiE 0.61 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli BL21 0.31 ECD_04196 hypochlorite-responsive transcription factor 0.61 ECD_03749 5 — —
Escherichia coli ECRC62 0.31 BNILDI_07735 hypT hypochlorite stress DNA-binding transcriptional regulator HypT 0.61 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli ECOR27 0.31 NOLOHH_03860 hypT hypochlorite stress DNA-binding transcriptional regulator HypT 0.61 NOLOHH_06280 polA DNA polymerase I — —
Escherichia fergusonii Becca 0.31 EFB2_04117 HTH-type transcriptional regulator YjiE 0.60 EFB2_04753 DNA polymerase I — —
Escherichia coli BW25113 0.31 b4327 yjiE predicted DNA-binding transcriptional regulator (NCBI) 0.61 b3863 polA DNA polymerase I (NCBI) low > 76
Escherichia coli ECOR38 0.31 HEPCGN_09540 hypT hypochlorite stress DNA-binding transcriptional regulator HypT 0.61 HEPCGN_12785 polA DNA polymerase I — —
Dickeya dianthicola 67-19 0.31 HGI48_RS07255 hypochlorite stress DNA-binding transcriptional regulator HypT 0.59 HGI48_RS21260 DNA polymerase I — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF984 LysR family transcriptional regulator QseA 0.60 GFF2216 DNA polymerase I (EC 2.7.7.7) low > 78
Dickeya dadantii 3937 0.30 DDA3937_RS07390 hypochlorite stress DNA-binding transcriptional regulator HypT 0.59 DDA3937_RS00105 DNA polymerase I — —
Agrobacterium fabrum C58 0.30 Atu2512 transcriptional regulator, LysR family 0.41 Atu0110 DNA polymerase I — —
Pectobacterium carotovorum WPP14 0.29 HER17_RS14225 hypochlorite stress DNA-binding transcriptional regulator HypT 0.61 HER17_RS21470 DNA polymerase I — —
Phaeobacter inhibens DSM 17395 0.29 PGA1_262p00990 transcriptional regulator, LysR family 0.39 PGA1_c31780 DNA polymerase I low > 62
Rahnella sp. WP5 0.28 EX31_RS05520 LysR family transcriptional regulator 0.61 EX31_RS15905 DNA polymerase I low > 89
Klebsiella michiganensis M5al 0.28 BWI76_RS17610 LysR family transcriptional regulator 0.59 BWI76_RS00355 DNA polymerase I low > 92
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_2946 Transcriptional regulator 0.35 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) low > 68
Marinobacter adhaerens HP15 0.26 HP15_205 protein containing bacterial regulatory protein, LysR domain 0.56 HP15_293 DNA polymerase I low > 73
Dinoroseobacter shibae DFL-12 0.24 Dshi_1440 transcriptional regulator, LysR family (RefSeq) 0.40 Dshi_2909 DNA polymerase I (RefSeq) low > 64
Azospirillum brasilense Sp245 0.23 AZOBR_RS17550 LysR family transcriptional regulator 0.39 AZOBR_RS30685 DNA polymerase 0.26 62
Bosea sp. OAE506 0.22 ABIE41_RS16420 LysR family transcriptional regulator 0.31 ABIE41_RS03570 DNA polymerase I low > 77
Azospirillum sp. SherDot2 0.22 MPMX19_05675 HTH-type transcriptional regulator YjiE 0.38 MPMX19_04869 DNA polymerase I low > 112

Not shown: 1 genomes with orthologs for PP_5337 only; 46 genomes with orthologs for PP_0123 only