Conservation of cofitness between IAI46_03280 and IAI46_06550 in Serratia liquefaciens MT49

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Serratia liquefaciens MT49 1.0 IAI46_03280 DNA polymerase II 1.0 IAI46_06550 excinuclease ABC subunit B 0.72 11
Cupriavidus basilensis FW507-4G11 0.81 RR42_RS09335 DNA polymerase II 0.68 RR42_RS05995 excinuclease ABC subunit B 0.63 5
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_2361 DNA damage-inducible DNA polymerase II 0.74 Psyr_1974 Excinuclease ABC subunit B low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_2361 DNA damage-inducible DNA polymerase II 0.74 Psyr_1974 Excinuclease ABC subunit B low > 86
Paraburkholderia graminis OAS925 0.79 ABIE53_004018 DNA polymerase-2 0.66 ABIE53_001645 excinuclease ABC subunit B low > 113
Paraburkholderia bryophila 376MFSha3.1 0.79 H281DRAFT_01369 DNA damage-inducible DNA polymerase II 0.66 H281DRAFT_04973 Excinuclease ABC subunit B low > 103
Burkholderia phytofirmans PsJN 0.79 BPHYT_RS23105 DNA polymerase 0.66 BPHYT_RS06905 excinuclease ABC subunit B low > 109
Pseudomonas sp. RS175 0.77 PFR28_01299 DNA polymerase II 0.74 PFR28_02837 UvrABC system protein B low > 88
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_2137 DNA polymerase II (EC 2.7.7.7) 0.74 Pf6N2E2_52 Excinuclease ABC subunit B 0.39 6
Pseudomonas fluorescens GW456-L13 0.77 PfGW456L13_2472 DNA polymerase II (EC 2.7.7.7) 0.73 PfGW456L13_3959 Excinuclease ABC subunit B low > 87
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_87 DNA polymerase II (EC 2.7.7.7) 0.74 Pf1N1B4_26 Excinuclease ABC subunit B 0.28 76
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_29350 DNA polymerase II 0.74 AO353_20545 excinuclease ABC subunit B 0.60 5
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_01325 DNA polymerase II 0.74 AO356_21335 excinuclease ABC subunit B 0.48 5
Paraburkholderia sabiae LMG 24235 0.77 QEN71_RS13385 DNA polymerase II 0.66 QEN71_RS23870 excinuclease ABC subunit UvrB low > 153
Rahnella sp. WP5 0.77 EX31_RS03740 DNA polymerase II 0.92 EX31_RS23720 excinuclease ABC subunit B low > 89
Pseudomonas stutzeri RCH2 0.76 Psest_1519 DNA polymerase elongation subunit (family B) 0.74 Psest_1296 excinuclease ABC, B subunit 0.29 11
Pectobacterium carotovorum WPP14 0.75 HER17_RS02995 DNA polymerase II 0.90 HER17_RS13420 excinuclease ABC subunit B low > 75
Pseudomonas simiae WCS417 0.74 PS417_09565 DNA polymerase II 0.74 PS417_18685 excinuclease ABC subunit B 0.22 24
Pseudomonas sp. S08-1 0.74 OH686_16850 DNA polymerase II 0.72 OH686_04580 excinuclease ABC subunit B low > 80
Pseudomonas fluorescens SBW25-INTG 0.73 PFLU_RS10185 DNA polymerase II 0.74 PFLU_RS20655 excinuclease ABC subunit B low > 109
Pseudomonas fluorescens SBW25 0.73 PFLU_RS10185 DNA polymerase II 0.74 PFLU_RS20655 excinuclease ABC subunit B low > 109
Dickeya dianthicola 67-19 0.73 HGI48_RS18165 DNA polymerase II 0.88 HGI48_RS08695 excinuclease ABC subunit B low > 71
Dickeya dianthicola ME23 0.73 DZA65_RS19305 DNA polymerase II 0.89 DZA65_RS08990 excinuclease ABC subunit B low > 75
Dickeya dadantii 3937 0.73 DDA3937_RS18230 DNA polymerase II 0.89 DDA3937_RS08530 excinuclease ABC subunit B low > 74
Pseudomonas putida KT2440 0.73 PP_2393 DNA polymerase II 0.73 PP_1974 excinuclease UvrABC protein B — —
Erwinia tracheiphila SCR3 0.72 LU632_RS02810 polB DNA polymerase II 0.87 LU632_RS09160 uvrB excinuclease ABC subunit B low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF182 DNA polymerase II (EC 2.7.7.7) 0.86 GFF675 Excinuclease ABC subunit B low > 78
Pantoea sp. MT58 0.71 IAI47_16050 DNA polymerase II 0.88 IAI47_13505 excinuclease ABC subunit B low > 76
Escherichia coli ECOR38 0.71 HEPCGN_08785 polB DNA polymerase II 0.87 HEPCGN_01660 uvrB excinuclease ABC subunit UvrB low > 85
Escherichia coli BL21 0.71 ECD_00062 DNA polymerase II 0.87 ECD_00746 exision nuclease of nucleotide excision repair, DNA damage recognition component low > 60
Escherichia coli BW25113 0.71 b0060 polB DNA polymerase II (NCBI) 0.87 b0779 uvrB excinuclease ABC subunit B (NCBI) 0.50 7
Enterobacter sp. TBS_079 0.71 MPMX20_00754 DNA polymerase II 0.87 MPMX20_01408 UvrABC system protein B low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_03598 DNA polymerase II 0.87 OHPLBJKB_02934 UvrABC system protein B low > 73
Escherichia coli ECRC99 0.71 KEDOAH_17360 polB DNA polymerase II 0.87 KEDOAH_21530 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli ECRC101 0.71 MCAODC_01310 polB DNA polymerase II 0.87 MCAODC_25595 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli ECRC102 0.71 NIAGMN_08645 polB DNA polymerase II 0.87 NIAGMN_04425 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli ECRC101 0.71 OKFHMN_10795 polB DNA polymerase II 0.87 OKFHMN_06380 uvrB excinuclease ABC subunit UvrB — —
Escherichia fergusonii Becca 0.71 EFB2_03985 DNA polymerase II 0.87 EFB2_03326 UvrABC system protein B low > 86
Escherichia coli ECRC98 0.71 JDDGAC_14390 polB DNA polymerase II 0.87 JDDGAC_10015 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli ECOR27 0.71 NOLOHH_03140 polB DNA polymerase II 0.87 NOLOHH_22750 uvrB excinuclease ABC subunit UvrB low > 57
Escherichia coli ECRC62 0.71 BNILDI_08465 polB DNA polymerase II 0.87 BNILDI_21020 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli Nissle 1917 0.71 ECOLIN_RS00320 DNA polymerase II 0.87 ECOLIN_RS04150 excinuclease ABC subunit UvrB low > 52
Enterobacter asburiae PDN3 0.70 EX28DRAFT_3652 DNA polymerase elongation subunit (family B) 0.87 EX28DRAFT_2211 Excinuclease ABC subunit B low > 76
Klebsiella michiganensis M5al 0.69 BWI76_RS04575 DNA polymerase II 0.87 BWI76_RS08785 excinuclease ABC subunit B low > 92
Herbaspirillum seropedicae SmR1 0.67 HSERO_RS12200 DNA polymerase II 0.66 HSERO_RS15840 excinuclease ABC subunit B 0.24 16
Variovorax sp. SCN45 0.58 GFF7213 DNA polymerase II (EC 2.7.7.7) 0.64 GFF945 Excinuclease ABC subunit B low > 127
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_06130 DNA polymerase II 0.79 CSW01_05185 excinuclease ABC subunit UvrB low > 62
Alteromonas macleodii MIT1002 0.40 MIT1002_03358 DNA polymerase II 0.74 MIT1002_01261 Excinuclease ABC subunit B low > 70
Shewanella loihica PV-4 0.39 Shew_2482 DNA polymerase II (RefSeq) 0.74 Shew_2064 excinuclease ABC subunit B (RefSeq) 0.74 8
Shewanella sp. ANA-3 0.39 Shewana3_2629 DNA polymerase II (RefSeq) 0.75 Shewana3_2166 excinuclease ABC subunit B (RefSeq) low > 73
Shewanella amazonensis SB2B 0.39 Sama_1250 DNA polymerase II (RefSeq) 0.76 Sama_1828 excinuclease ABC subunit B (RefSeq) 0.40 21
Shewanella oneidensis MR-1 0.38 SO1820 polB DNA polymerase II (NCBI ptt file) 0.76 SO2506 uvrB excinuclease ABC, B subunit (NCBI ptt file) low > 76
Methanococcus maripaludis S2 0.08 MMP_RS02025 DNA-directed DNA polymerase 0.51 MMP_RS03805 excinuclease ABC subunit UvrB low > 25
Methanococcus maripaludis JJ 0.08 MMJJ_RS03280 DNA-directed DNA polymerase 0.53 MMJJ_RS01245 excinuclease ABC subunit UvrB low > 28

Not shown: 0 genomes with orthologs for IAI46_03280 only; 45 genomes with orthologs for IAI46_06550 only