| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS15940 | | peptide ABC transporter substrate-binding protein | 1.0 | HSERO_RS11155 | | peptidyl-prolyl cis-trans isomerase | 0.46 | 5 |
| Ralstonia solanacearum PSI07 | 0.71 | RPSI07_RS03260 | | ABC transporter ATP-binding protein | 0.43 | RPSI07_RS16155 | | peptidylprolyl isomerase | low | > 81 |
| Dickeya dianthicola ME23 | 0.66 | DZA65_RS02330 | | ABC transporter ATP-binding protein | 0.15 | DZA65_RS06030 | | peptidylprolyl isomerase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.66 | HGI48_RS02195 | | ABC transporter ATP-binding protein | 0.15 | HGI48_RS05705 | | peptidylprolyl isomerase | low | > 71 |
| Dickeya dadantii 3937 | 0.66 | DDA3937_RS02240 | | ATP-binding cassette domain-containing protein | 0.16 | DDA3937_RS05660 | | peptidylprolyl isomerase | low | > 74 |
| Pseudomonas fluorescens FW300-N2E2 | 0.63 | Pf6N2E2_1812 | | peptide ABC transporter, ATP-binding protein | 0.18 | Pf6N2E2_2214 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | — | — |
| Pseudomonas sp. RS175 | 0.61 | PFR28_00049 | | Oligopeptide transport ATP-binding protein OppD | 0.18 | PFR28_01231 | | Peptidyl-prolyl cis-trans isomerase D | low | > 88 |
| Pseudomonas syringae pv. syringae B728a | 0.60 | Psyr_2264 | | Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal | 0.17 | Psyr_1751 | | PpiC-type peptidyl-prolyl cis-trans isomerase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.60 | Psyr_2264 | | Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal | 0.17 | Psyr_1751 | | PpiC-type peptidyl-prolyl cis-trans isomerase | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.60 | AO356_29385 | | peptide ABC transporter substrate-binding protein | 0.17 | AO356_01725 | | peptidylprolyl isomerase | — | — |
| Azospirillum brasilense Sp245 | 0.54 | AZOBR_RS26235 | | peptide ABC transporter substrate-binding protein | 0.11 | AZOBR_RS07495 | | peptidylprolyl isomerase | low | > 97 |
| Variovorax sp. SCN45 | 0.46 | GFF7020 | | ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) | 0.36 | GFF2852 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | 0.52 | 58 |
| Enterobacter asburiae PDN3 | 0.46 | EX28DRAFT_2675 | | oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain | 0.14 | EX28DRAFT_2529 | | Parvulin-like peptidyl-prolyl isomerase | low | > 76 |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS04460 | | ABC transporter ATP-binding protein | 0.36 | ABID97_RS10675 | | SurA N-terminal domain-containing protein | low | > 91 |
| Rhodopseudomonas palustris CGA009 | 0.45 | TX73_007420 | | ABC transporter ATP-binding protein | 0.10 | TX73_014975 | | SurA N-terminal domain-containing protein | low | > 86 |
| Desulfovibrio vulgaris Miyazaki F | 0.45 | DvMF_1020 | | oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq) | 0.16 | DvMF_3022 | | PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq) | 0.57 | 21 |
| Azospirillum sp. SherDot2 | 0.44 | MPMX19_04416 | | Dipeptide transport ATP-binding protein DppD | 0.11 | MPMX19_00894 | | Peptidyl-prolyl cis-trans isomerase D | — | — |
| Enterobacter sp. TBS_079 | 0.44 | MPMX20_00903 | | Oligopeptide transport ATP-binding protein OppD | 0.14 | MPMX20_01032 | | Peptidyl-prolyl cis-trans isomerase D | low | > 85 |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS31475 | | ABC transporter ATP-binding protein | 0.42 | QEN71_RS21955 | | SurA N-terminal domain-containing protein | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.43 | H281DRAFT_01032 | | peptide/nickel transport system ATP-binding protein | 0.38 | H281DRAFT_00902 | | peptidyl-prolyl cis-trans isomerase D | low | > 103 |
| Cupriavidus basilensis FW507-4G11 | 0.43 | RR42_RS11230 | | peptide ABC transporter ATP-binding protein | 0.46 | RR42_RS09045 | | peptidylprolyl isomerase | low | > 128 |
| Rahnella sp. WP5 | 0.43 | EX31_RS09170 | | ABC transporter ATP-binding protein | 0.14 | EX31_RS22265 | | peptidylprolyl isomerase | low | > 89 |
| Acidovorax sp. GW101-3H11 | 0.43 | Ac3H11_4825 | | Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) | 0.37 | Ac3H11_377 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.43 | DVU2576 | | oligopeptide ABC transporter, ATP-binding protein (TIGR) | 0.16 | DVU1065 | | peptidyl-prolyl cis-trans isomerse domain protein (TIGR) | low | > 55 |
| Erwinia tracheiphila SCR3 | 0.42 | LU632_RS12865 | | ABC transporter ATP-binding protein | 0.13 | LU632_RS18325 | ppiD | peptidylprolyl isomerase | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.42 | CSW01_05560 | | ABC transporter ATP-binding protein | 0.17 | CSW01_09595 | | peptidylprolyl isomerase | low | > 62 |
| Rhodospirillum rubrum S1H | 0.42 | Rru_A0589 | | Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like (NCBI) | 0.08 | Rru_A1890 | | hypothetical protein (NCBI) | low | > 58 |
| Escherichia coli ECOR38 | 0.42 | HEPCGN_26460 | dppD | ABC transporter ATP-binding protein | 0.14 | HEPCGN_06925 | ppiD | peptidylprolyl isomerase | low | > 87 |
| Escherichia coli ECOR27 | 0.42 | NOLOHH_18975 | dppD | ABC transporter ATP-binding protein | 0.15 | NOLOHH_01245 | ppiD | peptidylprolyl isomerase | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.42 | OHPLBJKB_02233 | | putative D,D-dipeptide transport ATP-binding protein DdpD | 0.15 | OHPLBJKB_03232 | | Peptidyl-prolyl cis-trans isomerase D | low | > 73 |
| Escherichia coli BL21 | 0.42 | ECD_01442 | | D,D-dipeptide ABC transporter ATPase | 0.15 | ECD_00393 | | periplasmic folding chaperone, has an inactive PPIase domain | — | — |
| Escherichia coli BW25113 | 0.42 | b1484 | ddpD | D-ala-D-ala transporter subunit (NCBI) | 0.15 | b0441 | ppiD | peptidyl-prolyl cis-trans isomerase (rotamase D) (NCBI) | low | > 76 |
| Escherichia coli ECRC99 | 0.42 | KEDOAH_27105 | dppD | ABC transporter ATP-binding protein | 0.14 | KEDOAH_19655 | ppiD | peptidylprolyl isomerase | — | — |
| Escherichia coli ECRC102 | 0.42 | NIAGMN_25465 | dppD | ABC transporter ATP-binding protein | 0.14 | NIAGMN_06365 | ppiD | peptidylprolyl isomerase | — | — |
| Escherichia coli ECRC100 | 0.42 | OKFHMN_01335 | dppD | ABC transporter ATP-binding protein | 0.14 | OKFHMN_08310 | ppiD | peptidylprolyl isomerase | low | > 80 |
| Escherichia coli ECRC98 | 0.42 | JDDGAC_03825 | dppD | ABC transporter ATP-binding protein | 0.14 | JDDGAC_11965 | ppiD | peptidylprolyl isomerase | low | > 86 |
| Escherichia coli ECRC101 | 0.42 | MCAODC_16605 | dppD | ABC transporter ATP-binding protein | 0.14 | MCAODC_27535 | ppiD | peptidylprolyl isomerase | low | > 87 |
| Pantoea sp. MT58 | 0.41 | IAI47_09085 | | ABC transporter ATP-binding protein | 0.14 | IAI47_14635 | | peptidylprolyl isomerase | low | > 76 |
| Escherichia coli ECRC62 | 0.41 | BNILDI_17460 | ddpD | putative D,D-dipeptide transport ATP-binding protein DdpD | 0.15 | BNILDI_22660 | ppiD | peptidylprolyl isomerase | low | > 75 |
| Burkholderia phytofirmans PsJN | 0.40 | BPHYT_RS18675 | | peptide ABC transporter ATP-binding protein | 0.39 | BPHYT_RS09480 | | peptidyl-prolyl cis-trans isomerase | low | > 109 |
| Pseudomonas putida KT2440 | 0.40 | PP_0879 | | dipeptide ABC transporter - putative ATP binding subunit | 0.18 | PP_2304 | | putative Peptidyl-prolyl cis-trans isomerase D | low | > 96 |
| Pectobacterium carotovorum WPP14 | 0.40 | HER17_RS00235 | | dipeptide ABC transporter ATP-binding protein | 0.16 | HER17_RS15830 | | peptidylprolyl isomerase | low | > 75 |
| Pseudomonas fluorescens FW300-N1B4 | 0.39 | Pf1N1B4_1126 | | Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) | 0.18 | Pf1N1B4_3949 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.39 | PfGW456L13_5057 | | Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) | 0.18 | PfGW456L13_2556 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.39 | PS417_04050 | | peptide ABC transporter ATP-binding protein | 0.17 | PS417_17215 | | peptidylprolyl isomerase | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.39 | PFLU_RS04090 | | ABC transporter ATP-binding protein | 0.17 | PFLU_RS19150 | | peptidyl-prolyl cis-trans isomerase | — | — |
| Castellaniella sp019104865 MT123 | 0.39 | ABCV34_RS11095 | | ABC transporter ATP-binding protein | 0.28 | ABCV34_RS03085 | | SurA N-terminal domain-containing protein | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.39 | PFLU_RS04090 | | ABC transporter ATP-binding protein | 0.17 | PFLU_RS19150 | | peptidyl-prolyl cis-trans isomerase | — | — |
| Pseudomonas sp. S08-1 | 0.39 | OH686_08715 | | Dipeptide ABC transporter, ATP-binding protein DppD | 0.18 | OH686_03625 | | Peptidyl-prolyl cis-trans isomerase PpiD | low | > 80 |
| Shewanella oneidensis MR-1 | 0.31 | SO1802 | sapD | peptide ABC transporter, ATP-binding protein (NCBI ptt file) | 0.20 | SO1798 | ppiD | peptidyl-prolyl cis-trans isomerase D (NCBI ptt file) | — | — |
| Shewanella loihica PV-4 | 0.31 | Shew_2501 | | oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq) | 0.18 | Shew_2504 | | PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq) | — | — |
| Shewanella sp. ANA-3 | 0.31 | Shewana3_2653 | | oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq) | 0.20 | Shewana3_2657 | | PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.30 | Sama_1232 | | peptide ABC transporter, ATP-binding protein (RefSeq) | 0.18 | Sama_1228 | | peptidyl-prolyl cis-trans isomerase D (RefSeq) | low | > 62 |
Not shown: 5 genomes with orthologs for HSERO_RS15940 only; 23 genomes with orthologs for HSERO_RS11155 only