Conservation of cofitness between HSERO_RS16335 and HSERO_RS10595 in Herbaspirillum seropedicae SmR1

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS16335 guanine deaminase 1.0 HSERO_RS10595 competence protein ComJ 0.30 8
Paraburkholderia graminis OAS925 0.62 ABIE53_003192 guanine deaminase 0.60 ABIE53_001640 23S rRNA (adenine2030-N6)-methyltransferase low > 113
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS15100 guanine deaminase 0.59 BPHYT_RS06880 competence protein ComJ low > 109
Castellaniella sp019104865 MT123 0.61 ABCV34_RS12195 guanine deaminase 0.50 ABCV34_RS03075 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 48
Ralstonia solanacearum PSI07 0.61 RPSI07_RS14150 guanine deaminase 0.58 RPSI07_RS08205 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 81
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS03900 guanine deaminase 0.62 QEN71_RS23895 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 153
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS03160 guanine deaminase 0.58 RALBFv3_RS09065 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 76
Ralstonia solanacearum UW163 0.60 UW163_RS10565 guanine deaminase 0.58 UW163_RS04530 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Ralstonia solanacearum GMI1000 0.60 RS_RS10530 guanine deaminase 0.58 RS_RS16875 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 80
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS05320 guanine deaminase 0.56 RR42_RS09005 competence protein ComJ low > 128
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS15060 guanine deaminase 0.58 ABZR87_RS04360 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 80
Pseudomonas simiae WCS417 0.53 PS417_20900 guanine deaminase 0.34 PS417_02200 lactate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_4087 Guanine deaminase (EC 3.5.4.3) 0.34 PfGW456L13_219 Protein involved in catabolism of external DNA low > 87
Pseudomonas fluorescens SBW25 0.53 PFLU_RS22515 guanine deaminase 0.34 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS22515 guanine deaminase 0.34 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_00745 guanine deaminase 0.34 AO353_12840 lactate dehydrogenase low > 101
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_3850 Guanine deaminase (EC 3.5.4.3) 0.34 Pf1N1B4_1481 Protein involved in catabolism of external DNA low > 87
Pseudomonas stutzeri RCH2 0.53 Psest_1208 guanine deaminase 0.35 Psest_0408 Protein involved in catabolism of external DNA low > 67
Pseudomonas sp. RS175 0.52 PFR28_01061 Guanine deaminase 0.33 PFR28_05056 Ribosomal RNA large subunit methyltransferase J low > 88
Variovorax sp. SCN45 0.52 GFF1914 Guanine deaminase (EC 3.5.4.3) 0.43 GFF2057 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) low > 127
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_2339 Guanine deaminase (EC 3.5.4.3) 0.34 Pf6N2E2_3679 Protein involved in catabolism of external DNA low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF213 Guanine deaminase (EC 3.5.4.3) 0.44 GFF1683 Protein involved in catabolism of external DNA low > 90
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_02575 guanine deaminase 0.34 AO356_08990 lactate dehydrogenase low > 104
Pseudomonas syringae pv. syringae B728a 0.52 Psyr_1812 guanine deaminase 0.36 Psyr_4772 Protein of unknown function DUF519 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.52 Psyr_1812 guanine deaminase 0.36 Psyr_4772 Protein of unknown function DUF519 low > 86
Variovorax sp. OAS795 0.52 ABID97_RS22045 guanine deaminase 0.42 ABID97_RS25005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 91
Pseudomonas putida KT2440 0.51 PP_4281 guanine deaminase 0.36 PP_4945 23S rRNA m(6)A2030 methyltransferase low > 96
Escherichia coli ECOR38 0.50 HEPCGN_18915 guaD guanine deaminase 0.42 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 87
Escherichia coli BL21 0.50 ECD_02716 guanine deaminase 0.42 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent low > 61
Escherichia coli ECRC98 0.50 JDDGAC_23270 guaD guanine deaminase 0.42 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 86
Escherichia coli ECRC99 0.50 KEDOAH_08510 guaD guanine deaminase 0.42 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli BW25113 0.50 b2883 guaD guanine deaminase (NCBI) 0.42 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) low > 76
Escherichia coli ECRC100 0.50 OKFHMN_19625 guaD guanine deaminase 0.42 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 80
Escherichia coli ECOR27 0.50 NOLOHH_11555 guaD guanine deaminase 0.42 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 75
Escherichia coli ECRC102 0.50 NIAGMN_17395 guaD guanine deaminase 0.42 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC62 0.50 BNILDI_10080 guaD guanine deaminase 0.42 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 75
Escherichia coli Nissle 1917 0.50 ECOLIN_RS16065 guanine deaminase 0.42 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 55
Escherichia fergusonii Becca 0.50 EFB2_01018 Guanine deaminase 0.42 EFB2_00316 Ribosomal RNA large subunit methyltransferase J low > 86
Escherichia coli ECRC101 0.50 MCAODC_10150 guaD guanine deaminase 0.42 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_00832 Guanine deaminase 0.42 OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J low > 73
Dickeya dianthicola ME23 0.50 DZA65_RS12690 guanine deaminase 0.40 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Acidovorax sp. GW101-3H11 0.49 Ac3H11_1117 Guanine deaminase (EC 3.5.4.3) 0.39 Ac3H11_3047 Protein involved in catabolism of external DNA low > 79
Acinetobacter radioresistens SK82 0.49 MPMX26_03062 Guanine deaminase 0.28 MPMX26_02660 Ribosomal RNA large subunit methyltransferase J low > 36
Dickeya dadantii 3937 0.49 DDA3937_RS12145 guanine deaminase 0.41 DDA3937_RS21255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Dickeya dianthicola 67-19 0.49 HGI48_RS12240 guanine deaminase 0.41 HGI48_RS00055 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 71
Sinorhizobium meliloti 1021 0.48 SM_b21293 guanine deaminase 0.31 SMc00608 hypothetical protein low > 103
Bosea sp. OAE506 0.47 ABIE41_RS21745 guanine deaminase 0.28 ABIE41_RS11490 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 77
Serratia liquefaciens MT49 0.46 IAI46_11780 guanine deaminase 0.41 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 86
Rhizobium sp. OAE497 0.46 ABIE40_RS25220 guanine deaminase 0.32 ABIE40_RS06520 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 107
Klebsiella michiganensis M5al 0.46 BWI76_RS10520 guanine deaminase 0.41 BWI76_RS26680 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 92
Pantoea sp. MT58 0.45 IAI47_09810 guanine deaminase 0.40 IAI47_01340 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 76
Enterobacter asburiae PDN3 0.45 EX28DRAFT_1948 guanine deaminase (EC 3.5.4.3) 0.41 EX28DRAFT_4062 Protein involved in catabolism of external DNA low > 76
Enterobacter sp. TBS_079 0.45 MPMX20_01658 Guanine deaminase 0.42 MPMX20_04398 Ribosomal RNA large subunit methyltransferase J low > 85
Azospirillum sp. SherDot2 0.45 MPMX19_05617 Guanine deaminase 0.34 MPMX19_01202 Ribosomal RNA large subunit methyltransferase J low > 112
Lysobacter sp. OAE881 0.45 ABIE51_RS09675 guanine deaminase 0.33 ABIE51_RS14285 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 62
Rahnella sp. WP5 0.43 EX31_RS07035 guanine deaminase 0.41 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 89
Agrobacterium fabrum C58 0.43 Atu2315 guanine deaminase 0.34 Atu1135 hypothetical protein low > 89
Phaeobacter inhibens DSM 17395 0.42 PGA1_c21840 guanine deaminase GuaD 0.26 PGA1_c26480 Protein involved in catabolism of external DNA low > 62
Alteromonas macleodii MIT1002 0.41 MIT1002_01570 Guanine deaminase 0.32 MIT1002_02015 Ribosomal RNA large subunit methyltransferase J low > 70

Not shown: 5 genomes with orthologs for HSERO_RS16335 only; 21 genomes with orthologs for HSERO_RS10595 only