| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS20780 | | cytochrome C oxidase assembly protein | 1.0 | HSERO_RS04250 | | C4-dicarboxylate ABC transporter permease | 0.31 | 19 |
| Ralstonia sp. UNC404CL21Col | 0.64 | ABZR87_RS06810 | | cytochrome c oxidase assembly protein | 0.27 | ABZR87_RS21100 | | TRAP transporter large permease | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.63 | H281DRAFT_01992 | | cytochrome c oxidase assembly protein subunit 11 | 0.26 | H281DRAFT_05326 | | TRAP transporter, DctM subunit | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.62 | BPHYT_RS02655 | | cytochrome C oxidase assembly protein | 0.26 | BPHYT_RS24185 | | C4-dicarboxylate ABC transporter permease | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.62 | ABIE53_000676 | | cytochrome c oxidase assembly protein subunit 11 | 0.26 | ABIE53_006500 | | tripartite ATP-independent transporter DctM subunit | low | > 113 |
| Cupriavidus basilensis FW507-4G11 | 0.59 | RR42_RS01885 | | cytochrome C oxidase assembly protein | 0.33 | RR42_RS34990 | | ABC transporter permease | low | > 128 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.57 | GFF691 | | Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 | 0.34 | GFF2972 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.57 | Ac3H11_3890 | | Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 | 0.39 | Ac3H11_163 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 79 |
| Variovorax sp. SCN45 | 0.53 | GFF2300 | | Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 | 0.39 | GFF6470 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 127 |
| Variovorax sp. OAS795 | 0.53 | ABID97_RS23950 | | cytochrome c oxidase assembly protein | 0.36 | ABID97_RS19635 | | TRAP transporter large permease | low | > 91 |
| Shewanella loihica PV-4 | 0.40 | Shew_0123 | | cytochrome C oxidase assembly protein (RefSeq) | 0.44 | Shew_1444 | | dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) | low | > 60 |
| Shewanella sp. ANA-3 | 0.39 | Shewana3_3993 | | cytochrome C oxidase assembly protein (RefSeq) | 0.47 | Shewana3_1414 | | TRAP dicarboxylate transporter, DctM subunit (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.39 | Sama_3485 | | cytochrome C oxidase assembly protein (RefSeq) | 0.45 | Sama_2211 | | alpha-ketoglutarate TRAP transporter, large permease component (from data) | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.38 | MIT1002_04033 | | Cytochrome c oxidase assembly protein CtaG | 0.31 | MIT1002_02428 | | Neu5Ac permease | low | > 70 |
| Shewanella oneidensis MR-1 | 0.38 | SO4608 | coxG | cytochrome c oxidase assembly protein coxG (NCBI ptt file) | 0.50 | SO3136 | dctM | C4-dicarboxylate transport protein (NCBI ptt file) | low | > 76 |
| Pseudomonas stutzeri RCH2 | 0.35 | Psest_4328 | | Cytochrome oxidase assembly factor | 0.56 | Psest_4270 | | TRAP transporter, DctM subunit | low | > 67 |
| Marinobacter adhaerens HP15 | 0.34 | HP15_3773 | | cytochrome c oxidase assembly protein CtaG/Cox11 | 0.28 | HP15_4074 | | C4-dicarboxylate transport system (permease large protein) | low | > 73 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.34 | Xcc-8004.4843.1 | | Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 | 0.24 | Xcc-8004.203.1 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 74 |
| Pseudomonas putida KT2440 | 0.32 | PP_0105 | | Cytochrome C oxidase assembly protein | 0.33 | PP_1167 | | D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) | low | > 96 |
| Azospirillum brasilense Sp245 | 0.32 | AZOBR_RS10575 | | cytochrome C oxidase assembly protein | 0.82 | AZOBR_RS09595 | | C4-dicarboxylate ABC transporter permease | low | > 97 |
| Pseudomonas simiae WCS417 | 0.32 | PS417_00310 | | cysteine synthase | 0.50 | PS417_14900 | | C4-dicarboxylate ABC transporter permease | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.32 | Pf6N2E2_4100 | | Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 | 0.34 | Pf6N2E2_485 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 103 |
| Pseudomonas fluorescens SBW25-INTG | 0.32 | PFLU_RS00300 | | cytochrome c oxidase assembly protein | 0.50 | PFLU_RS16920 | | TRAP transporter large permease | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.32 | PFLU_RS00300 | | cytochrome c oxidase assembly protein | 0.50 | PFLU_RS16920 | | TRAP transporter large permease | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.31 | AO356_11170 | | cysteine synthase | 0.35 | AO356_23045 | | hypothetical protein | low | > 104 |
| Pseudomonas sp. RS175 | 0.30 | PFR28_04689 | | Cytochrome c oxidase assembly protein CtaG | 0.58 | PFR28_00121 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 88 |
| Agrobacterium fabrum C58 | 0.30 | Atu0770 | | cytochrome C oxidase assembly protein | 0.31 | Atu2743 | | hypothetical protein | low | > 89 |
| Sinorhizobium meliloti 1021 | 0.30 | SMc00012 | | cytochrome C oxidase assembly protein | 0.34 | SM_b21436 | | C4-dicarboxylate transport system, permease large protein transmembrane | low | > 103 |
| Rhodopseudomonas palustris CGA009 | 0.29 | TX73_004305 | | cytochrome c oxidase assembly protein | 0.76 | TX73_010560 | | TRAP transporter large permease subunit | 0.50 | 75 |
| Pseudomonas syringae pv. syringae B728a | 0.28 | Psyr_0285 | | Cytochrome c oxidase assembly protein CtaG/Cox11 | 0.33 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.28 | Psyr_0285 | | Cytochrome c oxidase assembly protein CtaG/Cox11 | 0.33 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | low | > 86 |
| Phaeobacter inhibens DSM 17395 | 0.28 | PGA1_c06280 | | cytochrome c oxidase assembly protein CtaG | 0.45 | PGA1_c20660 | | TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, large permease component (from data) | low | > 62 |
| Azospirillum sp. SherDot2 | 0.28 | MPMX19_00888 | | Cytochrome c oxidase assembly protein CtaG | 0.78 | MPMX19_00661 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 112 |
| Magnetospirillum magneticum AMB-1 | 0.27 | AMB_RS10955 | | cytochrome c oxidase assembly protein | 0.80 | AMB_RS04550 | | C4-dicarboxylate ABC transporter permease | low | > 64 |
| Rhizobium sp. OAE497 | 0.27 | ABIE40_RS04080 | | cytochrome c oxidase assembly protein | 0.29 | ABIE40_RS25810 | | TRAP transporter large permease | low | > 107 |
| Dinoroseobacter shibae DFL-12 | 0.27 | Dshi_1143 | | cytochrome c oxidase assembly protein CtaG/Cox11 (RefSeq) | 0.31 | Dshi_2753 | | TRAP dicarboxylate transporter, DctM subunit (RefSeq) | — | — |
| Bosea sp. OAE506 | 0.27 | ABIE41_RS22965 | | cytochrome c oxidase assembly protein | 0.33 | ABIE41_RS07820 | | TRAP transporter large permease | low | > 77 |
| Caulobacter crescentus NA1000 Δfur | 0.26 | CCNA_03514 | | cytochrome c oxidase assembly protein ctaG | 0.29 | CCNA_01515 | | C4-dicarboxylate transporter large subunit | low | > 67 |
| Caulobacter crescentus NA1000 | 0.26 | CCNA_03514 | | cytochrome c oxidase assembly protein ctaG | 0.29 | CCNA_01515 | | C4-dicarboxylate transporter large subunit | low | > 66 |
Not shown: 12 genomes with orthologs for HSERO_RS20780 only; 21 genomes with orthologs for HSERO_RS04250 only