Conservation of cofitness between HSERO_RS09795 and HSERO_RS02120 in Herbaspirillum seropedicae SmR1

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS09795 carbon starvation protein A 1.0 HSERO_RS02120 phosphomethylpyrimidine synthase ThiC 0.28 8
Ralstonia sp. UNC404CL21Col 0.78 ABZR87_RS05220 carbon starvation CstA family protein 0.71 ABZR87_RS04785 phosphomethylpyrimidine synthase ThiC low > 80
Cupriavidus basilensis FW507-4G11 0.77 RR42_RS20515 large component of pyruvate transporter (cstA-like) (from data) 0.70 RR42_RS01290 thiamine biosynthesis protein ThiC low > 128
Paraburkholderia sabiae LMG 24235 0.77 QEN71_RS32880 carbon starvation CstA family protein 0.87 QEN71_RS05480 phosphomethylpyrimidine synthase ThiC low > 153
Ralstonia solanacearum PSI07 0.76 RPSI07_RS23840 carbon starvation protein A 0.70 RPSI07_RS23420 phosphomethylpyrimidine synthase ThiC low > 81
Ralstonia solanacearum IBSBF1503 0.76 RALBFv3_RS09510 carbon starvation protein A 0.70 RALBFv3_RS09940 phosphomethylpyrimidine synthase ThiC low > 76
Ralstonia solanacearum UW163 0.76 UW163_RS04070 carbon starvation protein A 0.70 UW163_RS03640 phosphomethylpyrimidine synthase ThiC — —
Ralstonia solanacearum GMI1000 0.76 RS_RS00110 carbon starvation protein A 0.70 RS_RS00555 phosphomethylpyrimidine synthase 0.34 67
Hydrogenophaga sp. GW460-11-11-14-LB1 0.76 GFF3273 Carbon starvation protein A 0.68 GFF4626 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 90
Variovorax sp. OAS795 0.75 ABID97_RS22455 carbon starvation CstA family protein 0.68 ABID97_RS25235 phosphomethylpyrimidine synthase ThiC low > 91
Variovorax sp. SCN45 0.75 GFF1737 Carbon starvation protein A 0.70 GFF2000 Phosphomethylpyrimidine synthase ThiC (EC 4.1.99.17) 0.54 76
Azospirillum brasilense Sp245 0.73 AZOBR_RS18105 carbon starvation protein A 0.65 AZOBR_RS07940 phosphomethylpyrimidine synthase low > 97
Pseudomonas syringae pv. syringae B728a 0.71 Psyr_4273 Carbon starvation protein CstA 0.76 Psyr_0544 hydroxymethylpyrimidine synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.71 Psyr_4273 Carbon starvation protein CstA 0.76 Psyr_0544 hydroxymethylpyrimidine synthase low > 86
Pseudomonas putida KT2440 0.71 PP_4641 putative transporter 0.76 PP_4922 Phosphomethylpyrimidine synthase low > 96
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_4835 Carbon starvation protein A 0.75 Pf1N1B4_1447 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 87
Pseudomonas simiae WCS417 0.70 PS417_24295 carbon starvation protein A 0.75 PS417_02355 thiamine biosynthesis protein ThiC low > 88
Pseudomonas fluorescens FW300-N2C3 0.70 AO356_25680 carbon starvation protein A 0.75 AO356_08810 thiamine biosynthesis protein ThiC — —
Pseudomonas fluorescens SBW25 0.70 PFLU_RS26210 carbon starvation protein A 0.75 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 0.75 1
Pseudomonas fluorescens FW300-N2E3 0.70 AO353_25255 large subunit of pyruvate transporter (CstA) (from data) 0.75 AO353_13010 thiamine biosynthesis protein ThiC low > 101
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS26210 carbon starvation protein A 0.75 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 0.26 75
Pseudomonas sp. RS175 0.70 PFR28_01620 Pyruvate/proton symporter BtsT 0.75 PFR28_05091 Phosphomethylpyrimidine synthase — —
Pseudomonas fluorescens FW300-N2E2 0.70 Pf6N2E2_1294 Carbon starvation protein A 0.75 Pf6N2E2_3644 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 103
Pseudomonas sp. S08-1 0.69 OH686_16210 Carbon starvation protein A 0.76 OH686_15885 phosphomethylpyrimidine synthase low > 80
Enterobacter sp. TBS_079 0.69 MPMX20_01255 Peptide transporter CstA 0.69 MPMX20_00217 Phosphomethylpyrimidine synthase low > 85
Pseudomonas fluorescens GW456-L13 0.69 PfGW456L13_1444 Carbon starvation protein A 0.75 PfGW456L13_187 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 87
Enterobacter asburiae PDN3 0.68 EX28DRAFT_2369 Carbon starvation protein, predicted membrane protein 0.69 EX28DRAFT_4536 phosphomethylpyrimidine synthase low > 76
Escherichia coli ECRC101 0.68 MCAODC_26765 cstA pyruvate/proton symporter CstA 0.69 MCAODC_03875 thiC phosphomethylpyrimidine synthase ThiC low > 87
Escherichia coli ECRC102 0.68 NIAGMN_05605 cstA pyruvate/proton symporter CstA 0.69 NIAGMN_11125 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli BW25113 0.68 b0598 cstA carbon starvation protein (NCBI) 0.69 b3994 thiC thiamine biosynthesis protein ThiC (NCBI) 0.34 2
Escherichia coli ECRC62 0.68 BNILDI_21935 cstA pyruvate/proton symporter CstA 0.69 BNILDI_06005 thiC phosphomethylpyrimidine synthase ThiC low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.68 OHPLBJKB_03108 Peptide transporter CstA 0.69 OHPLBJKB_04056 Phosphomethylpyrimidine synthase low > 73
Escherichia coli ECOR38 0.68 HEPCGN_00730 cstA pyruvate/proton symporter CstA 0.69 HEPCGN_12010 thiC phosphomethylpyrimidine synthase ThiC low > 87
Escherichia coli Nissle 1917 0.68 ECOLIN_RS03280 pyruvate/proton symporter CstA 0.69 ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC low > 55
Escherichia coli ECRC98 0.68 JDDGAC_11195 cstA pyruvate/proton symporter CstA 0.69 JDDGAC_17000 thiC phosphomethylpyrimidine synthase ThiC low > 86
Escherichia coli ECRC100 0.68 OKFHMN_07550 cstA pyruvate/proton symporter CstA 0.69 OKFHMN_13375 thiC phosphomethylpyrimidine synthase ThiC low > 80
Escherichia fergusonii Becca 0.68 EFB2_03494 Peptide transporter CstA 0.69 EFB2_04617 Phosphomethylpyrimidine synthase 0.28 65
Escherichia coli ECRC99 0.68 KEDOAH_20420 cstA pyruvate/proton symporter CstA 0.69 KEDOAH_14785 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli ECOR27 0.68 NOLOHH_23925 cstA pyruvate/proton symporter CstA 0.69 NOLOHH_05520 thiC phosphomethylpyrimidine synthase ThiC low > 75
Klebsiella michiganensis M5al 0.68 BWI76_RS07775 carbon starvation protein A 0.68 BWI76_RS01555 phosphomethylpyrimidine synthase ThiC low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF4505 Carbon starvation protein A 0.70 GFF4198 Thiamin biosynthesis protein ThiC low > 78
Pantoea sp. MT58 0.67 IAI47_09315 carbon starvation protein A 0.68 IAI47_18085 phosphomethylpyrimidine synthase ThiC low > 76
Rhodospirillum rubrum S1H 0.67 Rru_A0259 Carbon starvation protein CstA (NCBI) 0.58 Rru_A2008 Thiamine biosynthesis protein ThiC (NCBI) low > 58
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.1756.1 Carbon starvation protein A 0.74 Xcc-8004.1066.1 hypothetical protein low > 74
Rahnella sp. WP5 0.67 EX31_RS17455 carbon starvation protein A 0.69 EX31_RS16815 phosphomethylpyrimidine synthase ThiC low > 89
Pectobacterium carotovorum WPP14 0.66 HER17_RS09410 carbon starvation protein A 0.70 HER17_RS20380 phosphomethylpyrimidine synthase ThiC low > 75
Serratia liquefaciens MT49 0.66 IAI46_13875 carbon starvation protein A 0.69 IAI46_01320 phosphomethylpyrimidine synthase ThiC low > 86
Brevundimonas sp. GW460-12-10-14-LB2 0.66 A4249_RS00760 carbon starvation CstA family protein 0.63 A4249_RS15715 phosphomethylpyrimidine synthase ThiC low > 48
Dickeya dianthicola ME23 0.66 DZA65_RS13005 carbon starvation protein A 0.68 DZA65_RS01215 phosphomethylpyrimidine synthase ThiC low > 75
Acinetobacter radioresistens SK82 0.66 MPMX26_01068 Peptide transporter CstA 0.73 MPMX26_00180 Phosphomethylpyrimidine synthase low > 36
Dickeya dianthicola 67-19 0.65 HGI48_RS12555 carbon starvation protein A 0.68 HGI48_RS01170 phosphomethylpyrimidine synthase ThiC 0.46 33
Dickeya dadantii 3937 0.65 DDA3937_RS12500 carbon starvation protein A 0.69 DDA3937_RS01175 phosphomethylpyrimidine synthase ThiC low > 74
Lysobacter sp. OAE881 0.63 ABIE51_RS15525 carbon starvation CstA family protein 0.73 ABIE51_RS17515 phosphomethylpyrimidine synthase ThiC low > 62
Escherichia coli BL21 0.62 ECD_04220 putative transporter 0.69 ECD_03871 phosphomethylpyrimidine synthase low > 61
Rhodanobacter sp. FW510-T8 0.60 OKGIIK_11475 cstA Carbon starvation protein CstA (peptide/pyruvate transporter) 0.76 OKGIIK_16965 thiC phosphomethylpyrimidine synthase ThiC low > 52
Dyella japonica UNC79MFTsu3.2 0.60 ABZR86_RS19270 carbon starvation CstA family protein 0.76 ABZR86_RS17230 phosphomethylpyrimidine synthase ThiC low > 74
Erwinia tracheiphila SCR3 0.60 LU632_RS20450 carbon starvation protein A 0.68 LU632_RS00970 thiC phosphomethylpyrimidine synthase ThiC low > 74
Castellaniella sp019104865 MT123 0.50 ABCV34_RS10765 carbon starvation CstA family protein 0.84 ABCV34_RS10825 phosphomethylpyrimidine synthase ThiC low > 48
Mycobacterium tuberculosis H37Rv 0.45 Rv3063 Probable carbon starvation protein A homolog CstA 0.52 Rv0423c Probable thiamine biosynthesis protein ThiC — —
Azospirillum sp. SherDot2 0.31 MPMX19_06232 Pyruvate/proton symporter BtsT 0.62 MPMX19_00336 Phosphomethylpyrimidine synthase low > 112
Echinicola vietnamensis KMM 6221, DSM 17526 0.18 Echvi_0765 Carbon starvation protein, predicted membrane protein 0.72 Echvi_3567 thiamine biosynthesis protein ThiC low > 79
Pseudomonas stutzeri RCH2 0.18 Psest_3894 Carbon starvation protein, predicted membrane protein 0.76 Psest_0477 thiamine biosynthesis protein ThiC low > 67
Alteromonas macleodii MIT1002 0.17 MIT1002_03708 Carbon starvation protein A 0.68 MIT1002_00097 Phosphomethylpyrimidine synthase low > 70

Not shown: 3 genomes with orthologs for HSERO_RS09795 only; 31 genomes with orthologs for HSERO_RS02120 only