Conservation of cofitness between HER17_RS01965 and HER17_RS15990 in Pectobacterium carotovorum WPP14

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS01965 peptidylprolyl isomerase 1.0 HER17_RS15990 tRNA guanosine(34) transglycosylase Tgt 0.80 9
Dickeya dianthicola ME23 0.72 DZA65_RS20605 peptidylprolyl isomerase 0.93 DZA65_RS05855 tRNA guanosine(34) transglycosylase Tgt low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF3723 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) 0.91 GFF4305 tRNA-guanine transglycosylase (EC 2.4.2.29) low > 78
Dickeya dianthicola 67-19 0.71 HGI48_RS19515 peptidylprolyl isomerase 0.93 HGI48_RS05530 tRNA guanosine(34) transglycosylase Tgt low > 71
Dickeya dadantii 3937 0.71 DDA3937_RS19395 peptidylprolyl isomerase 0.93 DDA3937_RS05470 tRNA guanosine(34) transglycosylase Tgt low > 74
Escherichia coli ECRC100 0.71 OKFHMN_17285 slyD peptidylprolyl isomerase 0.90 OKFHMN_08505 tgt tRNA guanosine(34) transglycosylase Tgt low > 80
Escherichia coli ECRC102 0.71 NIAGMN_15055 slyD peptidylprolyl isomerase 0.90 NIAGMN_06560 tgt tRNA guanosine(34) transglycosylase Tgt — —
Escherichia coli BW25113 0.71 b3349 slyD FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) 0.90 b0406 tgt queuine tRNA-ribosyltransferase (NCBI) low > 76
Escherichia coli BL21 0.71 ECD_03200 FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) 0.90 ECD_00354 tRNA-guanine transglycosylase low > 61
Escherichia fergusonii Becca 0.71 EFB2_00474 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 0.90 EFB2_03651 Queuine tRNA-ribosyltransferase low > 86
Escherichia coli Nissle 1917 0.71 ECOLIN_RS19180 peptidylprolyl isomerase 0.90 ECOLIN_RS02445 tRNA guanosine(34) transglycosylase Tgt — —
Escherichia coli ECRC98 0.71 JDDGAC_20915 slyD peptidylprolyl isomerase 0.90 JDDGAC_12160 tgt tRNA guanosine(34) transglycosylase Tgt low > 86
Escherichia coli ECOR27 0.71 NOLOHH_09085 slyD peptidylprolyl isomerase 0.90 NOLOHH_01440 tgt tRNA guanosine(34) transglycosylase Tgt low > 75
Escherichia coli ECOR38 0.71 HEPCGN_16115 slyD peptidylprolyl isomerase 0.90 HEPCGN_07145 tgt tRNA guanosine(34) transglycosylase Tgt low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_00354 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 0.90 OHPLBJKB_03270 Queuine tRNA-ribosyltransferase low > 73
Escherichia coli ECRC62 0.71 BNILDI_02435 slyD peptidylprolyl isomerase 0.90 BNILDI_22855 tgt tRNA guanosine(34) transglycosylase Tgt low > 75
Escherichia coli ECRC101 0.71 MCAODC_07815 slyD peptidylprolyl isomerase 0.90 MCAODC_27730 tgt tRNA guanosine(34) transglycosylase Tgt low > 87
Escherichia coli ECRC99 0.71 KEDOAH_10855 slyD peptidylprolyl isomerase 0.90 KEDOAH_19460 tgt tRNA guanosine(34) transglycosylase Tgt — —
Pantoea sp. MT58 0.71 IAI47_02040 peptidylprolyl isomerase 0.91 IAI47_14805 tRNA guanosine(34) transglycosylase Tgt low > 76
Enterobacter asburiae PDN3 0.70 EX28DRAFT_4181 FKBP-type peptidyl-prolyl cis-trans isomerases 2 0.91 EX28DRAFT_2565 tRNA-guanine transglycosylase low > 76
Enterobacter sp. TBS_079 0.70 MPMX20_04242 hypothetical protein 0.91 MPMX20_00997 Queuine tRNA-ribosyltransferase low > 85
Klebsiella michiganensis M5al 0.68 BWI76_RS25920 peptidylprolyl isomerase 0.91 BWI76_RS06300 tRNA guanosine(34) transglycosylase Tgt — —
Erwinia tracheiphila SCR3 0.65 LU632_RS22725 slyD peptidylprolyl isomerase 0.87 LU632_RS18500 tgt tRNA guanosine(34) transglycosylase Tgt low > 74
Alteromonas macleodii MIT1002 0.36 MIT1002_02725 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 0.76 MIT1002_02813 Queuine tRNA-ribosyltransferase low > 70
Shewanella amazonensis SB2B 0.36 Sama_0904 peptidyl-prolyl cis-trans isomerase SlyD (RefSeq) 0.83 Sama_2193 tgt queuine tRNA-ribosyltransferase (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_0074 FKBP-type peptidyl-prolyl cis-trans isomerases 2 0.72 B158DRAFT_2516 tRNA-guanine transglycosylase (EC 2.4.2.29) low > 40
Shewanella loihica PV-4 0.35 Shew_1078 peptidylprolyl isomerase, FKBP-type (RefSeq) 0.82 Shew_2337 tgt queuine tRNA-ribosyltransferase (RefSeq) low > 60
Acinetobacter radioresistens SK82 0.34 MPMX26_01005 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 0.67 MPMX26_00438 Queuine tRNA-ribosyltransferase low > 36
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS00495 peptidylprolyl isomerase 0.66 ABZR86_RS09540 tRNA guanosine(34) transglycosylase Tgt low > 74
Pseudomonas stutzeri RCH2 0.34 Psest_3212 FKBP-type peptidyl-prolyl cis-trans isomerases 2 0.71 Psest_1242 tRNA-guanine transglycosylase, queuosine-34-forming low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_1009 Peptidylprolyl isomerase, FKBP-type 0.70 Psyr_1228 tRNA-guanine transglycosylase — —
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_1009 Peptidylprolyl isomerase, FKBP-type 0.70 Psyr_1228 tRNA-guanine transglycosylase — —
Pseudomonas sp. RS175 0.33 PFR28_00197 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 0.70 PFR28_00277 Queuine tRNA-ribosyltransferase low > 88
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_5262 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) 0.69 Pf6N2E2_3198 tRNA-guanine transglycosylase (EC 2.4.2.29) low > 103
Pseudomonas putida KT2440 0.33 PP_0776 FKBP-type peptidyl-prolyl cis-trans isomerase 0.69 PP_0833 queuine tRNA-ribosyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS03790 peptidylprolyl isomerase 0.69 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt low > 109
Pseudomonas simiae WCS417 0.33 PS417_03740 peptidylprolyl isomerase 0.69 PS417_23245 queuine tRNA-ribosyltransferase — —
Pseudomonas fluorescens SBW25 0.33 PFLU_RS03790 peptidylprolyl isomerase 0.69 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt low > 109
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_16690 peptidylprolyl isomerase 0.69 AO356_06690 queuine tRNA-ribosyltransferase low > 104
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_03570 Peptidyl-prolyl cis-trans isomerase 0.64 OKGIIK_10000 tgt tRNA guanosine(34) transglycosylase Tgt low > 52
Pseudomonas fluorescens GW456-L13 0.32 PfGW456L13_4988 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) 0.69 PfGW456L13_4882 tRNA-guanine transglycosylase (EC 2.4.2.29) low > 87
Rhodanobacter denitrificans MT42 0.32 LRK55_RS14460 peptidylprolyl isomerase 0.65 LRK55_RS02880 tRNA guanosine(34) transglycosylase Tgt low > 63
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_05055 peptidylprolyl isomerase 0.70 AO353_15790 queuine tRNA-ribosyltransferase — —
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS14745 peptidylprolyl isomerase 0.65 LRK54_RS03130 tRNA guanosine(34) transglycosylase Tgt 0.31 55
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_1052 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) 0.70 Pf1N1B4_3006 tRNA-guanine transglycosylase (EC 2.4.2.29) low > 87
Ralstonia solanacearum GMI1000 0.30 RS_RS05725 peptidylprolyl isomerase 0.62 RS_RS13575 tRNA guanosine(34) transglycosylase Tgt low > 80
Ralstonia solanacearum PSI07 0.30 RPSI07_RS18450 peptidylprolyl isomerase 0.60 RPSI07_RS11615 tRNA guanosine(34) transglycosylase Tgt low > 81
Ralstonia solanacearum IBSBF1503 0.29 RALBFv3_RS14910 peptidylprolyl isomerase 0.62 RALBFv3_RS05685 tRNA guanosine(34) transglycosylase Tgt low > 76
Ralstonia solanacearum UW163 0.29 UW163_RS12380 peptidylprolyl isomerase 0.62 UW163_RS07940 tRNA guanosine(34) transglycosylase Tgt — —
Lysobacter sp. OAE881 0.29 ABIE51_RS06395 peptidylprolyl isomerase 0.63 ABIE51_RS15020 tRNA guanosine(34) transglycosylase Tgt low > 62
Dechlorosoma suillum PS 0.28 Dsui_2872 FKBP-type peptidyl-prolyl cis-trans isomerase 0.65 Dsui_3323 tRNA-guanine transglycosylase, queuosine-34-forming low > 51
Pseudomonas sp. S08-1 0.28 OH686_06255 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 0.72 OH686_17430 tRNA-guanine transglycosylase low > 80
Magnetospirillum magneticum AMB-1 0.27 AMB_RS19590 peptidylprolyl isomerase 0.53 AMB_RS03090 tRNA guanosine(34) transglycosylase Tgt low > 64
Mucilaginibacter yixingensis YX-36 DSM 26809 0.25 ABZR88_RS07860 peptidylprolyl isomerase 0.47 ABZR88_RS13980 tRNA guanosine(34) transglycosylase Tgt 0.46 34
Herbaspirillum seropedicae SmR1 0.24 HSERO_RS16370 peptidyl-prolyl cis-trans isomerase 0.63 HSERO_RS06175 queuine tRNA-ribosyltransferase low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.24 GFF3652 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) 0.58 GFF2798 tRNA-guanine transglycosylase (EC 2.4.2.29) low > 90
Parabacteroides merdae CL09T00C40 0.23 HMPREF1078_RS16705 FKBP-type peptidyl-prolyl cis-trans isomerase 0.46 HMPREF1078_RS01080 tRNA guanosine(34) transglycosylase Tgt low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.23 CA265_RS12900 peptidylprolyl isomerase 0.46 CA265_RS13030 tRNA guanosine(34) transglycosylase Tgt low > 88
Echinicola vietnamensis KMM 6221, DSM 17526 0.22 Echvi_1133 FKBP-type peptidyl-prolyl cis-trans isomerases 2 0.47 Echvi_2049 tRNA-guanine transglycosylase, queuosine-34-forming low > 79
Variovorax sp. SCN45 0.22 GFF7163 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) 0.55 GFF5534 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) low > 127
Variovorax sp. OAS795 0.22 ABID97_RS02385 peptidylprolyl isomerase 0.55 ABID97_RS01595 tRNA guanosine(34) transglycosylase Tgt low > 91
Acidovorax sp. GW101-3H11 0.21 Ac3H11_1303 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) 0.56 Ac3H11_861 tRNA-guanine transglycosylase (EC 2.4.2.29) low > 79
Pontibacter actiniarum KMM 6156, DSM 19842 0.20 CA264_05445 peptidylprolyl isomerase 0.46 CA264_00655 tRNA-guanine(34) transglycosylase low > 74

Not shown: 0 genomes with orthologs for HER17_RS01965 only; 37 genomes with orthologs for HER17_RS15990 only