Conservation of cofitness between HER17_RS15240 and HER17_RS14110 in Pectobacterium carotovorum WPP14

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 1.0 HER17_RS14110 ABC transporter permease 0.63 2
Dickeya dadantii 3937 0.98 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.30 DDA3937_RS12875 aliphatic sulfonate ABC transporter permease SsuC — —
Serratia liquefaciens MT49 0.95 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.39 IAI46_23535 taurine ABC transporter permease TauC low > 86
Pantoea sp. MT58 0.92 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.38 IAI47_02010 taurine ABC transporter permease TauC low > 76
Enterobacter asburiae PDN3 0.91 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.42 EX28DRAFT_2604 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component — —
Escherichia coli BL21 0.90 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.40 ECD_00317 taurine ABC transporter permease — —
Escherichia coli BW25113 0.90 b0636 ybeA hypothetical protein (NCBI) 0.40 b0367 tauC taurine transporter subunit (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.90 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.40 OHPLBJKB_03307 Putative aliphatic sulfonates transport permease protein SsuC — —
Enterobacter sp. TBS_079 0.90 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.43 MPMX20_00957 Putative aliphatic sulfonates transport permease protein SsuC low > 85
Escherichia coli Nissle 1917 0.90 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 ECOLIN_RS02265 taurine ABC transporter permease TauC — —
Erwinia tracheiphila SCR3 0.90 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.39 LU632_RS22755 tauC taurine ABC transporter permease TauC low > 74
Klebsiella michiganensis M5al 0.90 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 BWI76_RS06075 taurine transporter subunit low > 92
Escherichia fergusonii Becca 0.90 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.40 EFB2_03686 Putative aliphatic sulfonates transport permease protein SsuC low > 86
Escherichia coli ECRC99 0.90 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 KEDOAH_19280 tauC taurine ABC transporter permease TauC — —
Escherichia coli ECRC101 0.90 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 MCAODC_27920 tauC taurine ABC transporter permease TauC low > 87
Escherichia coli ECRC102 0.90 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 NIAGMN_06745 tauC taurine ABC transporter permease TauC — —
Escherichia coli ECOR27 0.90 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 NOLOHH_01615 tauC taurine ABC transporter permease TauC low > 75
Escherichia coli ECRC100 0.90 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 OKFHMN_08690 tauC taurine ABC transporter permease TauC low > 80
Escherichia coli ECRC98 0.90 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 JDDGAC_12345 tauC taurine ABC transporter permease TauC — —
Escherichia coli ECOR38 0.90 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.26 HEPCGN_23170 ssuC aliphatic sulfonate ABC transporter permease SsuC low > 87
Escherichia coli ECRC62 0.90 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.41 BNILDI_23030 tauC taurine ABC transporter permease TauC — —
Pseudomonas sp. S08-1 0.63 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH 0.39 OH686_23860 Taurine ABC transporter, permease protein TauC low > 80
Pseudomonas stutzeri RCH2 0.61 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.28 Psest_2364 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component low > 67
Pseudomonas putida KT2440 0.61 PP_4808 23S rRNA m3psi1915 methyltransferase 0.42 PP_0231 taurine ABC transporter permease subunit low > 96
Pseudomonas sp. RS175 0.61 PFR28_03869 Ribosomal RNA large subunit methyltransferase H 0.39 PFR28_04862 Putative aliphatic sulfonates transport permease protein SsuC low > 88
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH 0.39 Pf1N1B4_1766 Taurine transport system permease protein TauC — —
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH 0.40 Pf6N2E2_3911 Taurine transport system permease protein TauC low > 103
Pseudomonas fluorescens FW300-N2C3 0.61 AO356_15305 50S rRNA methyltransferase 0.40 AO356_10200 taurine ABC transporter permease low > 104
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_06480 50S rRNA methyltransferase 0.40 AO353_11715 taurine ABC transporter permease low > 101
Pseudomonas fluorescens SBW25 0.61 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 PFLU_RS01250 taurine ABC transporter permease TauC low > 109
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH 0.40 PfGW456L13_433 Taurine transport system permease protein TauC low > 87
Pseudomonas simiae WCS417 0.61 PS417_24730 50S rRNA methyltransferase 0.40 PS417_01140 taurine ABC transporter permease — —
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 PFLU_RS01250 taurine ABC transporter permease TauC low > 109
Paraburkholderia graminis OAS925 0.50 ABIE53_001541 23S rRNA (pseudouridine1915-N3)-methyltransferase 0.35 ABIE53_000637 taurine transport system permease protein — —
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS06385 ribosomal RNA large subunit methyltransferase H 0.38 BPHYT_RS21715 taurine ABC transporter permease low > 109
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS17780 50S rRNA methyltransferase 0.36 HSERO_RS11660 taurine ABC transporter permease low > 78
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS04710 50S rRNA methyltransferase 0.38 RR42_RS33670 taurine ABC transporter permease low > 128
Variovorax sp. SCN45 0.48 GFF298 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase (EC 2.1.1.177) 0.31 GFF7011 Taurine ABC transporter, permease protein TauC low > 127
Ralstonia solanacearum PSI07 0.46 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.27 RPSI07_RS17425 aliphatic sulfonate ABC transporter permease SsuC low > 81
Ralstonia solanacearum GMI1000 0.46 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.26 RS_RS06720 aliphatic sulfonate ABC transporter permease SsuC — —
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 ABZR87_RS01040 ABC transporter permease subunit low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF4529 LSU m3Psi1915 methyltransferase RlmH 0.32 GFF5714 Urea carboxylase-related ABC transporter, permease protein low > 90
Ralstonia solanacearum UW163 0.45 UW163_RS10105 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.27 UW163_RS13390 sulfonate ABC transporter — —
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS03565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.27 RALBFv3_RS00060 sulfonate ABC transporter low > 76
Methanococcus maripaludis JJ 0.29 MMJJ_RS09010 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.24 MMJJ_RS08185 ABC transporter permease low > 28
Methanococcus maripaludis S2 0.29 MMP_RS05365 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.25 MMP_RS06165 ABC transporter permease low > 25
Sinorhizobium meliloti 1021 0.28 SMc03781 rRNA large subunit methyltransferase 0.36 SM_b21528 taurine uptake ABC transporter permease low > 103
Azospirillum sp. SherDot2 0.27 MPMX19_01940 Ribosomal RNA large subunit methyltransferase H 0.34 MPMX19_06758 Putative aliphatic sulfonates transport permease protein SsuC — —
Dinoroseobacter shibae DFL-12 0.27 Dshi_0088 protein of unknown function DUF163 (RefSeq) 0.20 Dshi_2545 binding-protein-dependent transport systems inner membrane component (RefSeq) low > 64
Rhizobium sp. OAE497 0.27 ABIE40_RS18965 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.28 ABIE40_RS23135 ABC transporter permease subunit low > 107
Azospirillum brasilense Sp245 0.26 AZOBR_RS04060 50S rRNA methyltransferase 0.33 AZOBR_RS25220 ABC transporter permease low > 97
Rhodopseudomonas palustris CGA009 0.22 TX73_000870 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.28 TX73_021575 ABC transporter permease low > 86
Desulfovibrio vulgaris Miyazaki F 0.21 DvMF_0845 protein of unknown function DUF163 (RefSeq) 0.28 DvMF_0521 binding-protein-dependent transport systems inner membrane component (RefSeq) low > 51

Not shown: 44 genomes with orthologs for HER17_RS15240 only; 1 genomes with orthologs for HER17_RS14110 only