Conservation of cofitness between HER17_RS14920 and HER17_RS11410 in Pectobacterium carotovorum WPP14

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS14920 ADP-forming succinate--CoA ligase subunit beta 1.0 HER17_RS11410 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.57 15
Dickeya dadantii 3937 0.93 DDA3937_RS06470 ADP-forming succinate--CoA ligase subunit beta 0.94 DDA3937_RS11335 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD — —
Dickeya dianthicola ME23 0.92 DZA65_RS06855 ADP-forming succinate--CoA ligase subunit beta 0.94 DZA65_RS11720 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 75
Dickeya dianthicola 67-19 0.92 HGI48_RS06510 ADP-forming succinate--CoA ligase subunit beta 0.94 HGI48_RS11375 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.52 34
Pantoea sp. MT58 0.91 IAI47_13735 ADP-forming succinate--CoA ligase subunit beta 0.79 IAI47_11020 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD — —
Erwinia tracheiphila SCR3 0.90 LU632_RS16085 sucC ADP-forming succinate--CoA ligase subunit beta 0.86 LU632_RS00060 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD — —
Klebsiella michiganensis M5al 0.90 BWI76_RS08425 succinyl-CoA ligase subunit beta 0.89 BWI76_RS23430 2-deoxy-D-gluconate 3-dehydrogenase low > 92
Escherichia coli ECRC102 0.90 NIAGMN_04965 sucC ADP-forming succinate--CoA ligase subunit beta 0.87 NIAGMN_17695 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD — —
Escherichia fergusonii Becca 0.90 EFB2_03378 Succinate--CoA ligase [ADP-forming] subunit beta 0.86 EFB2_01041 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase low > 86
Escherichia coli ECRC101 0.90 MCAODC_26135 sucC ADP-forming succinate--CoA ligase subunit beta 0.87 MCAODC_10450 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 87
Escherichia coli ECRC62 0.90 BNILDI_21300 sucC ADP-forming succinate--CoA ligase subunit beta 0.87 BNILDI_10290 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.90 OHPLBJKB_02989 Succinate--CoA ligase [ADP-forming] subunit beta 0.87 OHPLBJKB_00887 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase low > 73
Escherichia coli ECRC98 0.90 JDDGAC_10570 sucC ADP-forming succinate--CoA ligase subunit beta 0.87 JDDGAC_23590 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 86
Escherichia coli ECOR38 0.90 HEPCGN_01315 sucC ADP-forming succinate--CoA ligase subunit beta 0.87 HEPCGN_19585 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 87
Escherichia coli ECRC99 0.90 KEDOAH_21050 sucC ADP-forming succinate--CoA ligase subunit beta 0.87 KEDOAH_08205 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD — —
Escherichia coli BW25113 0.90 b0728 sucC succinyl-CoA synthetase subunit beta (NCBI) 0.87 b2842 kduD 2-deoxy-D-gluconate 3-dehydrogenase (NCBI) low > 76
Escherichia coli ECOR27 0.90 NOLOHH_23305 sucC ADP-forming succinate--CoA ligase subunit beta 0.87 NOLOHH_11810 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 75
Escherichia coli BL21 0.90 ECD_00687 succinyl-CoA synthetase, beta subunit 0.40 ECD_02618 putative SDR family oxidoreductase low > 61
Escherichia coli Nissle 1917 0.90 ECOLIN_RS03880 ADP-forming succinate--CoA ligase subunit beta 0.86 ECOLIN_RS15950 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD — —
Escherichia coli ECRC100 0.90 OKFHMN_06915 sucC ADP-forming succinate--CoA ligase subunit beta 0.87 OKFHMN_19925 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 80
Rahnella sp. WP5 0.89 EX31_RS23450 ADP-forming succinate--CoA ligase subunit beta 0.86 EX31_RS01480 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.89 GFF4641 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.86 GFF1327 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) low > 78
Enterobacter sp. TBS_079 0.88 MPMX20_01356 Succinate--CoA ligase [ADP-forming] subunit beta 0.87 MPMX20_03715 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase low > 85
Enterobacter asburiae PDN3 0.88 EX28DRAFT_2264 succinyl-CoA synthetase, beta subunit 0.86 EX28DRAFT_2921 2-deoxy-D-gluconate 3-dehydrogenase low > 76
Pseudomonas sp. S08-1 0.78 OH686_01955 Succinyl-CoA ligase [ADP-forming] beta chain 0.26 OH686_01420 Oxidoreductase, short-chain dehydrogenase/reductase family — —
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS08970 ADP-forming succinate--CoA ligase subunit beta 0.30 PFLU_RS18185 SDR family oxidoreductase — —
Pseudomonas fluorescens SBW25 0.77 PFLU_RS08970 ADP-forming succinate--CoA ligase subunit beta 0.30 PFLU_RS18185 SDR family oxidoreductase — —
Pseudomonas simiae WCS417 0.77 PS417_08910 succinyl-CoA synthetase subunit beta 0.29 PS417_12050 short-chain dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_3684 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.25 Pf1N1B4_5633 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.76 Psyr_2012 succinyl-CoA synthetase (ADP-forming) beta subunit 0.29 Psyr_2568 Short-chain dehydrogenase/reductase SDR — —
Pseudomonas syringae pv. syringae B728a 0.76 Psyr_2012 succinyl-CoA synthetase (ADP-forming) beta subunit 0.29 Psyr_2568 Short-chain dehydrogenase/reductase SDR — —
Alteromonas macleodii MIT1002 0.75 MIT1002_01950 Succinyl-CoA ligase [ADP-forming] subunit beta 0.51 MIT1002_03304 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase — —
Pseudomonas stutzeri RCH2 0.74 Psest_2491 succinyl-CoA synthetase, beta subunit 0.34 Psest_0357 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) low > 67
Lysobacter sp. OAE881 0.59 ABIE51_RS04860 ADP-forming succinate--CoA ligase subunit beta 0.62 ABIE51_RS02825 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD — —
Xanthomonas campestris pv. campestris strain 8004 0.57 Xcc-8004.1355.1 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.63 Xcc-8004.207.1 hypothetical protein — —
Dinoroseobacter shibae DFL-12 0.56 Dshi_2878 succinyl-CoA synthetase, beta subunit (RefSeq) 0.29 Dshi_2035 short-chain dehydrogenase/reductase SDR (RefSeq) — —
Azospirillum sp. SherDot2 0.55 MPMX19_00106 Succinate--CoA ligase [ADP-forming] subunit beta 0.65 MPMX19_05789 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase — —
Azospirillum brasilense Sp245 0.55 AZOBR_RS14065 malate--CoA ligase subunit beta 0.65 AZOBR_RS30220 3-ketoacyl-ACP reductase low > 97
Paraburkholderia sabiae LMG 24235 0.54 QEN71_RS20405 ADP-forming succinate--CoA ligase subunit beta 0.64 QEN71_RS37290 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 153
Caulobacter crescentus NA1000 Δfur 0.54 CCNA_00340 succinyl-CoA synthetase beta chain 0.58 CCNA_01559 2-deoxy-D-gluconate 3-dehydrogenase — —
Caulobacter crescentus NA1000 0.54 CCNA_00340 succinyl-CoA synthetase beta chain 0.58 CCNA_01559 2-deoxy-D-gluconate 3-dehydrogenase — —
Phaeobacter inhibens DSM 17395 0.53 PGA1_c03630 succinyl-CoA ligase [ADP-forming] subunit beta 0.33 PGA1_c27390 short-chain dehydrogenase/reductase — —
Rhodopseudomonas palustris CGA009 0.53 TX73_000990 ADP-forming succinate--CoA ligase subunit beta 0.32 TX73_024180 3-oxoacyl-ACP reductase FabG — —
Sphingomonas koreensis DSMZ 15582 0.52 Ga0059261_2278 succinyl-CoA synthetase, beta subunit 0.62 Ga0059261_2966 2-deoxy-D-gluconate 3-dehydrogenase — —
Bosea sp. OAE506 0.52 ABIE41_RS08965 ADP-forming succinate--CoA ligase subunit beta 0.54 ABIE41_RS07840 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD — —
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_04205 succinyl-CoA synthetase (ADP-forming) beta subunit 0.68 H281DRAFT_01159 2-deoxy-D-gluconate 3-dehydrogenase — —
Sinorhizobium meliloti 1021 0.49 SMc02480 succinyl-CoA synthetase subunit beta 0.53 SM_b21348 2-deoxy-D-gluconate 3-dehydrogenase — —
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS16345 succinyl-CoA ligase [ADP-forming] subunit beta 0.63 BPHYT_RS10945 2-deoxy-D-gluconate 3-dehydrogenase low > 109
Paraburkholderia graminis OAS925 0.49 ABIE53_003445 succinyl-CoA synthetase beta subunit 0.68 ABIE53_002285 2-deoxy-D-gluconate 3-dehydrogenase low > 113
Variovorax sp. SCN45 0.48 GFF5405 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.31 GFF6751 Oxidoreductase, short-chain dehydrogenase/reductase family — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF2504 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.32 GFF3625 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.48 A4249_RS14420 ADP-forming succinate--CoA ligase subunit beta 0.65 A4249_RS07665 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD — —
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS07980 ADP-forming succinate--CoA ligase subunit beta 0.65 ABZR87_RS20810 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD — —
Rhizobium sp. OAE497 0.48 ABIE40_RS17995 ADP-forming succinate--CoA ligase subunit beta 0.59 ABIE40_RS25290 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD — —
Agrobacterium fabrum C58 0.47 Atu2638 succinyl-CoA synthetase beta chain 0.54 Atu3141 2-deoxy-D-gluconate 3-dehydrogenase — —
Castellaniella sp019104865 MT123 0.47 ABCV34_RS04435 ADP-forming succinate--CoA ligase subunit beta 0.26 ABCV34_RS06945 SDR family oxidoreductase — —
Pedobacter sp. GW460-11-11-14-LB5 0.43 CA265_RS04300 succinate--CoA ligase subunit beta 0.49 CA265_RS00760 2-deoxy-D-gluconate 3-dehydrogenase — —

Not shown: 39 genomes with orthologs for HER17_RS14920 only; 0 genomes with orthologs for HER17_RS11410 only