Conservation of cofitness between HER17_RS11620 and HER17_RS00510 in Pectobacterium carotovorum WPP14

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS11620 NUDIX hydrolase 1.0 HER17_RS00510 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG 0.78 13
Escherichia coli BL21 0.78 ECD_01132 bifunctional thiamine pyrimidine pyrophosphate hydrolase and thiamine pyrophosphate hydrolase 0.85 ECD_03304 branched-chain amino acid ABC transporter ATPase — —
Escherichia coli ECOR38 0.78 HEPCGN_24225 nudJ phosphatase NudJ 0.85 HEPCGN_15575 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 87
Escherichia coli ECRC99 0.78 KEDOAH_24835 nudJ phosphatase NudJ 0.85 KEDOAH_11385 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG — —
Escherichia fergusonii Becca 0.78 EFB2_02841 Phosphatase NudJ 0.85 EFB2_00367 Lipopolysaccharide export system ATP-binding protein LptB low > 86
Escherichia coli ECRC100 0.78 OKFHMN_00750 nudJ phosphatase NudJ 0.85 OKFHMN_16755 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 80
Escherichia coli BW25113 0.78 b1134 ymfB bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) 0.85 b3455 livG leucine/isoleucine/valine transporter subunit (NCBI) low > 76
Escherichia coli Nissle 1917 0.78 ECOLIN_RS06630 phosphatase NudJ 0.84 ECOLIN_RS19760 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG — —
Escherichia coli ECRC102 0.78 NIAGMN_24895 nudJ phosphatase NudJ 0.85 NIAGMN_14525 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG — —
Escherichia coli ECRC62 0.78 BNILDI_19060 nudJ phosphatase NudJ 0.85 BNILDI_02955 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.78 OHPLBJKB_02534 Phosphatase NudJ 0.85 OHPLBJKB_00248 Lipopolysaccharide export system ATP-binding protein LptB low > 73
Escherichia coli ECRC98 0.78 JDDGAC_06615 nudJ phosphatase NudJ 0.85 JDDGAC_20385 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 86
Escherichia coli ECRC101 0.78 MCAODC_22335 nudJ phosphatase NudJ 0.85 MCAODC_07285 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 87
Escherichia coli ECOR27 0.78 NOLOHH_20895 nudJ phosphatase NudJ 0.84 NOLOHH_08550 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 75
Dickeya dadantii 3937 0.77 DDA3937_RS11480 NUDIX hydrolase 0.94 DDA3937_RS00675 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 74
Serratia liquefaciens MT49 0.77 IAI46_10445 NUDIX hydrolase 0.90 IAI46_00975 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 86
Dickeya dianthicola 67-19 0.76 HGI48_RS11525 NUDIX hydrolase 0.93 HGI48_RS20715 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 71
Klebsiella michiganensis M5al 0.75 BWI76_RS11320 NUDIX hydrolase 0.85 BWI76_RS26335 ABC transporter ATP-binding protein — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF3419 Nudix-like NDP and NTP phosphohydrolase YmfB 0.84 GFF551 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) low > 78
Enterobacter sp. TBS_079 0.71 MPMX20_01818 Phosphatase NudJ 0.84 MPMX20_04331 Lipopolysaccharide export system ATP-binding protein LptB low > 85
Erwinia tracheiphila SCR3 0.71 LU632_RS14570 NUDIX hydrolase 0.85 LU632_RS19240 livG high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 74
Rahnella sp. WP5 0.71 EX31_RS24580 NUDIX hydrolase 0.91 EX31_RS14790 ABC transporter ATP-binding protein low > 89
Enterobacter asburiae PDN3 0.71 EX28DRAFT_1796 ADP-ribose pyrophosphatase 0.86 EX28DRAFT_4287 ABC-type branched-chain amino acid transport systems, ATPase component low > 76
Pantoea sp. MT58 0.65 IAI47_11910 NUDIX hydrolase 0.86 IAI47_01580 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG low > 76
Shewanella loihica PV-4 0.41 Shew_1561 NUDIX hydrolase (RefSeq) 0.33 Shew_2611 ABC transporter-related protein (RefSeq) low > 60
Dechlorosoma suillum PS 0.33 Dsui_3338 Zn-finger containing NTP pyrophosphohydrolase 0.47 Dsui_0627 ABC-type branched-chain amino acid transport systems, ATPase component low > 51
Marinobacter adhaerens HP15 0.32 HP15_2085 MutT/nudix family protein 0.71 HP15_3058 leucine/isoleucine/valine transporter ATP-binding subunit low > 73
Pseudomonas sp. S08-1 0.32 OH686_00215 Nudix-like NDP and NTP phosphohydrolase NudJ 0.73 OH686_04620 Branched-chain amino acid ABC transporter, ATP-binding protein LivG low > 80
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS01335 NUDIX hydrolase 0.45 ABZR87_RS00300 ABC transporter ATP-binding protein low > 80
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_2640 Nudix-like NDP and NTP phosphohydrolase YmfB 0.69 PfGW456L13_4610 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) low > 87
Pseudomonas sp. RS175 0.29 PFR28_02618 Phosphatase NudJ 0.70 PFR28_00537 Lipopolysaccharide export system ATP-binding protein LptB low > 88
Paraburkholderia bryophila 376MFSha3.1 0.29 H281DRAFT_04652 ADP-ribose pyrophosphatase YjhB, NUDIX family 0.43 H281DRAFT_04060 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family low > 103
Ralstonia solanacearum IBSBF1503 0.29 RALBFv3_RS05740 NUDIX hydrolase 0.45 RALBFv3_RS04680 ABC transporter ATP-binding protein low > 76
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_287 Nudix-like NDP and NTP phosphohydrolase YmfB 0.70 Pf6N2E2_2925 ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, ATPase component 1 LivG (from data) low > 103
Ralstonia solanacearum UW163 0.29 UW163_RS07885 NUDIX hydrolase 0.45 UW163_RS08990 ABC transporter ATP-binding protein — —
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_4049 Nudix-like NDP and NTP phosphohydrolase YmfB 0.69 Pf1N1B4_3215 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) — —
Pseudomonas fluorescens SBW25 0.28 PFLU_RS18575 NUDIX hydrolase 0.69 PFLU_RS06630 ABC transporter ATP-binding protein 0.41 45
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS18575 NUDIX hydrolase 0.69 PFLU_RS06630 ABC transporter ATP-binding protein low > 109
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_27700 NUDIX hydrolase 0.71 AO353_17110 ABC transporter ATP-binding protein low > 101
Burkholderia phytofirmans PsJN 0.28 BPHYT_RS03365 NUDIX hydrolase 0.43 BPHYT_RS15595 ABC transporter low > 109
Pseudomonas stutzeri RCH2 0.28 Psest_2022 ADP-ribose pyrophosphatase 0.73 Psest_1309 ABC-type branched-chain amino acid transport systems, ATPase component low > 67
Ralstonia solanacearum PSI07 0.28 RPSI07_RS11560 NUDIX hydrolase 0.45 RPSI07_RS12705 ABC transporter ATP-binding protein low > 81
Ralstonia solanacearum GMI1000 0.27 RS_RS13630 NUDIX hydrolase 0.45 RS_RS12240 ABC transporter ATP-binding protein low > 80
Acidovorax sp. GW101-3H11 0.27 Ac3H11_4361 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.47 Ac3H11_1693 ABC transporter for glutamine/isoleucine/leucine/phenylalanine/proline/serine/tyrosine, ATPase component 1 (from data) low > 79
Variovorax sp. SCN45 0.27 GFF4911 Nudix-like NDP and NTP phosphohydrolase NudJ 0.46 GFF6031 Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1) low > 127
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_22115 NUDIX hydrolase 0.70 AO356_05335 ABC transporter ATP-binding protein low > 104
Paraburkholderia graminis OAS925 0.27 ABIE53_000811 8-oxo-dGTP pyrophosphatase MutT (NUDIX family) 0.42 ABIE53_003283 branched-chain amino acid transport system ATP-binding protein low > 113
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS26735 NUDIX hydrolase 0.44 QEN71_RS03115 ABC transporter ATP-binding protein low > 153
Pseudomonas simiae WCS417 0.26 PS417_16535 NUDIX hydrolase 0.69 PS417_06600 leucine/isoleucine/valine transporter ATP-binding subunit low > 88
Hydrogenophaga sp. GW460-11-11-14-LB1 0.26 GFF2602 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.46 GFF780 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) low > 90
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_3189 NUDIX hydrolase 0.70 Psyr_3848 L-valine ABC transporter ATP-binding protein / L-isoleucine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_3189 NUDIX hydrolase 0.70 Psyr_3848 L-valine ABC transporter ATP-binding protein / L-isoleucine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein low > 86
Variovorax sp. OAS795 0.26 ABID97_RS04420 NUDIX hydrolase 0.50 ABID97_RS27570 ABC transporter ATP-binding protein low > 91
Pseudomonas putida KT2440 0.25 PP_4013 MutT/nudix family protein 0.72 PP_1138 branched chain amino acid transporter - ATP binding subunit low > 96
Herbaspirillum seropedicae SmR1 0.24 HSERO_RS03475 NUDIX hydrolase 0.62 HSERO_RS08285 amino acid ABC transporter ATP-binding protein low > 78
Cupriavidus basilensis FW507-4G11 0.23 RR42_RS17470 NUDIX hydrolase 0.65 RR42_RS14410 leucine/isoleucine/valine transporter ATP-binding subunit low > 128

Not shown: 12 genomes with orthologs for HER17_RS11620 only; 17 genomes with orthologs for HER17_RS00510 only