Conservation of cofitness between PS417_26685 and PS417_04290 in Pseudomonas simiae WCS417

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_26685 hypothetical protein 1.0 PS417_04290 hypothetical protein 0.29 5
Pseudomonas fluorescens SBW25 0.98 PFLU_RS28330 YqgE/AlgH family protein 0.96 PFLU_RS04345 ribosome-associated protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS28330 YqgE/AlgH family protein 0.96 PFLU_RS04345 ribosome-associated protein low > 109
Pseudomonas fluorescens FW300-N2E2 0.90 Pf6N2E2_4609 UPF0301 protein YqgE 0.89 Pf6N2E2_3279 FIG138315: Putative alpha helix protein low > 103
Pseudomonas sp. RS175 0.89 PFR28_04234 hypothetical protein 0.89 PFR28_00162 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_13465 hypothetical protein 0.90 AO356_07090 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_2350 UPF0301 protein YqgE 0.91 Pf1N1B4_1091 FIG138315: Putative alpha helix protein low > 87
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_1019 UPF0301 protein YqgE 0.91 PfGW456L13_5025 FIG138315: Putative alpha helix protein low > 87
Pseudomonas fluorescens FW300-N2E3 0.83 AO353_08120 hypothetical protein 0.89 AO353_05210 hypothetical protein low > 101
Pseudomonas putida KT2440 0.76 PP_4995 putative protein possibly involved in the control of exopolysaccharide production 0.77 PP_0941 putative ribosome associated protein low > 96
Pseudomonas syringae pv. syringae B728a 0.75 Psyr_0485 Protein of unknown function DUF179 0.89 Psyr_4155 Protein of unknown function DUF615 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.75 Psyr_0485 Protein of unknown function DUF179 0.89 Psyr_4155 Protein of unknown function DUF615 low > 86
Pseudomonas sp. S08-1 0.73 OH686_10925 UPF0301 protein YqgE 0.80 OH686_08575 UPF0307 protein YjgA low > 80
Pseudomonas stutzeri RCH2 0.68 Psest_0294 Putative transcriptional regulator 0.74 Psest_3319 Uncharacterized protein conserved in bacteria low > 67
Marinobacter adhaerens HP15 0.47 HP15_3510 transcriptional regulator 0.35 HP15_2448 protein belonging to uncharacterized protein family UPF0307 low > 73
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS25795 YqgE/AlgH family protein 0.29 QEN71_RS04265 ribosome biogenesis factor YjgA low > 153
Castellaniella sp019104865 MT123 0.44 ABCV34_RS10730 YqgE/AlgH family protein 0.28 ABCV34_RS10615 ribosome biogenesis factor YjgA low > 48
Alteromonas macleodii MIT1002 0.43 MIT1002_03056 hypothetical protein 0.24 MIT1002_00229 x96 protein low > 70
Lysobacter sp. OAE881 0.43 ABIE51_RS16025 YqgE/AlgH family protein 0.30 ABIE51_RS06800 ribosome biogenesis factor YjgA low > 62
Dechlorosoma suillum PS 0.43 Dsui_0593 putative transcriptional regulator 0.23 Dsui_1235 hypothetical protein low > 51
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1720.1 UPF0301 protein YqgE 0.32 Xcc-8004.1884.1 FIG138315: Putative alpha helix protein — —
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS10380 YqgE/AlgH family protein 0.29 ABZR86_RS21710 ribosome biogenesis factor YjgA — —
Pectobacterium carotovorum WPP14 0.41 HER17_RS02630 YqgE/AlgH family protein 0.36 HER17_RS20095 ribosome-associated protein — —
Rhodanobacter denitrificans MT42 0.41 LRK55_RS03980 YqgE/AlgH family protein 0.27 LRK55_RS03135 ribosome biogenesis factor YjgA — —
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS04210 YqgE/AlgH family protein 0.27 LRK54_RS03385 DUF615 domain-containing protein — —
Dickeya dadantii 3937 0.40 DDA3937_RS18565 YqgE/AlgH family protein 0.34 DDA3937_RS01495 ribosome-associated protein low > 74
Shewanella sp. ANA-3 0.40 Shewana3_1200 hypothetical protein (RefSeq) 0.25 Shewana3_3632 hypothetical protein (RefSeq) low > 73
Serratia liquefaciens MT49 0.40 IAI46_21395 YqgE/AlgH family protein 0.34 IAI46_22590 ribosome-associated protein — —
Klebsiella michiganensis M5al 0.40 BWI76_RS24080 DUF179 domain-containing protein 0.32 BWI76_RS02845 hypothetical protein — —
Dickeya dianthicola ME23 0.40 DZA65_RS19635 YqgE/AlgH family protein 0.32 DZA65_RS01475 ribosome-associated protein — —
Erwinia tracheiphila SCR3 0.39 LU632_RS05475 YqgE/AlgH family protein 0.32 LU632_RS02140 ribosome-associated protein low > 74
Dickeya dianthicola 67-19 0.39 HGI48_RS18500 YqgE/AlgH family protein 0.32 HGI48_RS01410 ribosome-associated protein low > 71
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_11085 algH YqgE/AlgH family protein 0.28 OKGIIK_10270 DUF615 domain-containing protein low > 52
Escherichia coli ECRC102 0.39 NIAGMN_17035 yqgE YqgE/AlgH family protein 0.32 NIAGMN_09780 yjgA ribosome-associated protein — —
Escherichia fergusonii Becca 0.39 EFB2_00954 hypothetical protein 0.32 EFB2_04299 hypothetical protein low > 86
Escherichia coli ECRC101 0.39 MCAODC_09790 yqgE YqgE/AlgH family protein 0.32 MCAODC_02435 yjgA ribosome-associated protein — —
Pantoea sp. MT58 0.39 IAI47_03610 YqgE/AlgH family protein 0.32 IAI47_02760 ribosome-associated protein — —
Escherichia coli ECRC98 0.39 JDDGAC_22900 yqgE YqgE/AlgH family protein 0.32 JDDGAC_15570 yjgA ribosome-associated protein — —
Escherichia coli BW25113 0.39 b2948 yqgE orf, hypothetical protein (VIMSS) 0.32 b4234 yjgA hypothetical protein (NCBI) low > 76
Escherichia coli BL21 0.39 ECD_02778 uncharacterized protein 0.32 ECD_04102 ribosome-associated UPF0307 family protein low > 60
Escherichia coli Nissle 1917 0.39 ECOLIN_RS16400 YqgE/AlgH family protein 0.32 ECOLIN_RS24565 ribosome biogenesis factor YjgA low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00770 hypothetical protein 0.32 OHPLBJKB_03801 hypothetical protein low > 73
Shewanella amazonensis SB2B 0.39 Sama_2472 putative transcriptional regulator (RefSeq) 0.27 Sama_0481 hypothetical protein (RefSeq) low > 62
Escherichia coli ECOR27 0.39 NOLOHH_11140 yqgE YqgE/AlgH family protein 0.32 NOLOHH_04190 yjgA ribosome-associated protein low > 57
Escherichia coli ECRC101 0.39 OKFHMN_19270 yqgE YqgE/AlgH family protein 0.32 OKFHMN_11930 yjgA ribosome-associated protein — —
Escherichia coli ECRC99 0.39 KEDOAH_08870 algH YqgE/AlgH family protein 0.32 KEDOAH_16225 yjgA ribosome-associated protein — —
Escherichia coli ECOR38 0.39 HEPCGN_18575 yqgE YqgE/AlgH family protein 0.32 HEPCGN_10130 yjgA ribosome-associated protein low > 85
Escherichia coli ECRC62 0.39 BNILDI_09720 yqgE YqgE/AlgH family protein 0.32 BNILDI_07320 yjgA ribosome-associated protein — —
Shewanella oneidensis MR-1 0.38 SO3346 conserved hypothetical protein (NCBI ptt file) 0.26 SO4079 conserved hypothetical protein (NCBI ptt file) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF3050 UPF0301 protein YqgE 0.32 GFF903 FIG138315: Putative alpha helix protein — —
Enterobacter asburiae PDN3 0.37 EX28DRAFT_2986 Putative transcriptional regulator 0.34 EX28DRAFT_3421 Uncharacterized protein conserved in bacteria — —
Shewanella loihica PV-4 0.37 Shew_1144 hypothetical protein (RefSeq) 0.20 Shew_0415 hypothetical protein (RefSeq) low > 60
Enterobacter sp. TBS_079 0.37 MPMX20_03806 hypothetical protein 0.34 MPMX20_00516 hypothetical protein — —
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_0191 Putative transcriptional regulator 0.36 B158DRAFT_2073 Uncharacterized protein conserved in bacteria low > 40
Rahnella sp. WP5 0.35 EX31_RS02670 YqgE/AlgH family protein 0.31 EX31_RS12315 ribosome-associated protein low > 89
Acinetobacter radioresistens SK82 0.35 MPMX26_00238 hypothetical protein 0.21 MPMX26_00549 hypothetical protein low > 36

Not shown: 34 genomes with orthologs for PS417_26685 only; 2 genomes with orthologs for PS417_04290 only