Conservation of cofitness between GFF678 and GFF613 in Hydrogenophaga sp. GW460-11-11-14-LB1

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF678 Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) 1.0 GFF613 tRNA-i(6)A37 methylthiotransferase 0.52 8
Variovorax sp. SCN45 0.89 GFF2232 Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) 0.81 GFF7320 tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3) low > 127
Variovorax sp. OAS795 0.88 ABID97_RS24190 3-oxoadipyl-CoA thiolase 0.81 ABID97_RS06475 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 91
Acidovorax sp. GW101-3H11 0.88 Ac3H11_3920 Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) 0.84 Ac3H11_4008 tRNA-i(6)A37 methylthiotransferase low > 79
Ralstonia sp. UNC404CL21Col 0.81 ABZR87_RS15790 3-oxoadipyl-CoA thiolase 0.75 ABZR87_RS07780 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 80
Ralstonia solanacearum IBSBF1503 0.81 RALBFv3_RS03860 3-oxoadipyl-CoA thiolase 0.73 RALBFv3_RS11825 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 76
Ralstonia solanacearum UW163 0.81 UW163_RS09810 3-oxoadipyl-CoA thiolase 0.73 UW163_RS01760 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Ralstonia solanacearum PSI07 0.80 RPSI07_RS13370 3-oxoadipyl-CoA thiolase 0.75 RPSI07_RS21380 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 81
Cupriavidus basilensis FW507-4G11 0.79 RR42_RS35915 beta-ketoadipyl CoA thiolase 0.76 RR42_RS02855 dimethylallyladenosine tRNA methylthiotransferase low > 128
Ralstonia solanacearum GMI1000 0.79 RS_RS11305 3-oxoadipyl-CoA thiolase 0.74 RS_RS02645 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 80
Paraburkholderia bryophila 376MFSha3.1 0.77 H281DRAFT_01504 3-oxoadipyl-CoA thiolase 0.74 H281DRAFT_04239 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 103
Burkholderia phytofirmans PsJN 0.77 BPHYT_RS17345 bifunctional thiolase PaaJ: 3-oxo-5,6-didehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) (from data) 0.74 BPHYT_RS16535 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 109
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS27505 3-oxoadipyl-CoA thiolase 0.75 QEN71_RS02195 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 153
Herbaspirillum seropedicae SmR1 0.75 HSERO_RS19990 acetyl-CoA acetyltransferase 0.74 HSERO_RS03615 (dimethylallyl)adenosine tRNA methylthiotransferase low > 78
Agrobacterium fabrum C58 0.74 Atu4549 beta-ketoadipyl CoA thiolase 0.45 Atu0356 miaB protein low > 89
Klebsiella michiganensis M5al 0.70 BWI76_RS16135 acetyl-CoA acetyltransferase 0.60 BWI76_RS08135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Azospirillum sp. SherDot2 0.70 MPMX19_05859 Beta-ketoadipyl-CoA thiolase 0.44 MPMX19_02511 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 112
Sinorhizobium meliloti 1021 0.70 SM_b20589 beta-ketoadipyl CoA thiolase 0.44 SMc01115 (dimethylallyl)adenosine tRNA methylthiotransferase low > 103
Marinobacter adhaerens HP15 0.70 HP15_2695 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) (from data) 0.60 HP15_2466 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 73
Rhizobium sp. OAE497 0.70 ABIE40_RS19550 3-oxoadipyl-CoA thiolase 0.45 ABIE40_RS01705 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 107
Acinetobacter radioresistens SK82 0.69 MPMX26_01701 Beta-ketoadipyl-CoA thiolase 0.55 MPMX26_02667 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 36
Magnetospirillum magneticum AMB-1 0.68 AMB_RS13850 3-oxoadipyl-CoA thiolase 0.45 AMB_RS22585 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 64
Caulobacter crescentus NA1000 Δfur 0.68 CCNA_02490 3-ketoacyl-CoA thiolase 0.44 CCNA_00054 tRNA 2-methylthioadenosine synthase low > 67
Serratia liquefaciens MT49 0.68 IAI46_16165 3-oxoadipyl-CoA thiolase 0.61 IAI46_06025 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 86
Caulobacter crescentus NA1000 0.68 CCNA_02490 3-ketoacyl-CoA thiolase 0.44 CCNA_00054 tRNA 2-methylthioadenosine synthase low > 66
Pseudomonas syringae pv. syringae B728a 0.68 Psyr_4011 Thiolase 0.60 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.68 Psyr_4011 Thiolase 0.60 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 86
Phaeobacter inhibens DSM 17395 0.67 PGA1_c04090 beta-ketoadipyl-CoA thiolase PaaJ 0.42 PGA1_c04710 (dimethylallyl)adenosine tRNA methylthiotransferase MiaB low > 62
Pseudomonas fluorescens GW456-L13 0.67 PfGW456L13_2430 Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) 0.60 PfGW456L13_1380 tRNA-i(6)A37 methylthiotransferase low > 87
Pseudomonas sp. RS175 0.67 PFR28_00622 Beta-ketoadipyl-CoA thiolase 0.60 PFR28_03848 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 88
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_17205 beta-ketoadipyl CoA thiolase 0.60 AO353_06375 (dimethylallyl)adenosine tRNA methylthiotransferase low > 101
Rhodopseudomonas palustris CGA009 0.66 TX73_002660 3-oxoadipyl-CoA thiolase 0.40 TX73_002325 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 86
Escherichia coli BW25113 0.66 b1397 paaJ acetyl-CoA acetyltransferase (NCBI) 0.60 b0661 miaB isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) low > 76
Pseudomonas fluorescens SBW25 0.66 PFLU_RS06735 3-oxoadipyl-CoA thiolase 0.60 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 109
Pseudomonas fluorescens SBW25-INTG 0.66 PFLU_RS06735 3-oxoadipyl-CoA thiolase 0.60 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 109
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_02314 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase 0.60 OHPLBJKB_03051 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 73
Escherichia coli ECOR27 0.66 NOLOHH_19445 paaJ bifunctional 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase 0.60 NOLOHH_23605 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Escherichia coli ECRC62 0.65 BNILDI_17900 paaJ bifunctional 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase 0.60 BNILDI_21610 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Pseudomonas fluorescens FW300-N2C3 0.65 AO356_04930 beta-ketoadipyl CoA thiolase 0.60 AO356_15410 (dimethylallyl)adenosine tRNA methylthiotransferase low > 104
Pseudomonas fluorescens FW300-N1B4 0.65 Pf1N1B4_3234 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) 0.60 Pf1N1B4_2712 tRNA-i(6)A37 methylthiotransferase low > 87
Pseudomonas simiae WCS417 0.64 PS417_06710 beta-ketoadipyl CoA thiolase 0.60 PS417_24625 (dimethylallyl)adenosine tRNA methylthiotransferase low > 88
Pseudomonas fluorescens FW300-N2E2 0.64 Pf6N2E2_2835 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) 0.60 Pf6N2E2_5018 tRNA-i(6)A37 methylthiotransferase low > 103
Dinoroseobacter shibae DFL-12 0.64 Dshi_3817 beta-ketoadipyl CoA thiolase (RefSeq) 0.45 Dshi_1019 RNA modification enzyme, MiaB family (RefSeq) low > 64
Pontibacter actiniarum KMM 6156, DSM 19842 0.52 CA264_17720 beta-ketoadipyl CoA thiolase 0.32 CA264_05315 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 74
Dickeya dianthicola 67-19 0.37 HGI48_RS00970 acetyl-CoA C-acyltransferase FadA 0.59 HGI48_RS06295 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 71
Dickeya dianthicola ME23 0.37 DZA65_RS01030 acetyl-CoA C-acyltransferase FadA 0.59 DZA65_RS06640 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 75
Dickeya dadantii 3937 0.37 DDA3937_RS20255 acetyl-CoA C-acyltransferase FadA 0.59 DDA3937_RS06250 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 74
Shewanella amazonensis SB2B 0.37 Sama_0031 fadA Acetyl-CoA C-acyltransferase (EC 2.3.1.16) (from data) 0.61 Sama_2575 tRNA-i(6)A37 modification enzyme MiaB (RefSeq) low > 62
Shewanella oneidensis MR-1 0.36 SO0020 fadA fatty oxidation complex, beta subunit (NCBI ptt file) 0.60 SO1181 miaB tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF272 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) 0.60 GFF4579 tRNA-i(6)A37 methylthiotransferase low > 78
Escherichia coli ECRC99 0.36 KEDOAH_13900 fadA acetyl-CoA C-acyltransferase FadA 0.60 KEDOAH_20745 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Escherichia coli ECRC102 0.36 NIAGMN_12005 fadA acetyl-CoA C-acyltransferase FadA 0.60 NIAGMN_05280 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Pectobacterium carotovorum WPP14 0.36 HER17_RS20555 acetyl-CoA C-acyltransferase FadA 0.59 HER17_RS15165 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 75
Escherichia coli ECRC101 0.36 OKFHMN_14250 fadA acetyl-CoA C-acyltransferase FadA 0.60 OKFHMN_07225 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Escherichia coli ECRC101 0.36 MCAODC_04755 fadA acetyl-CoA C-acyltransferase FadA 0.60 MCAODC_26440 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Escherichia coli ECRC98 0.36 JDDGAC_17875 fadA acetyl-CoA C-acyltransferase FadA 0.60 JDDGAC_10870 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Shewanella sp. ANA-3 0.36 Shewana3_0023 fadA Acetyl-CoA C-acyltransferase (EC 2.3.1.16) (from data) 0.60 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) low > 73

Not shown: 2 genomes with orthologs for GFF678 only; 44 genomes with orthologs for GFF613 only