| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 1.0 | GFF3881 | | Lipoprotein NlpD | 1.0 | GFF5153 | | Ribonucleotide reductase transcriptional regulator NrdR | 0.67 | 6 |
| Variovorax sp. SCN45 | 0.56 | GFF2843 | | Murein hydrolase activator NlpD | 0.77 | GFF561 | | Ribonucleotide reductase transcriptional regulator NrdR | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.55 | Ac3H11_1786 | | Lipoprotein NlpD | 0.73 | Ac3H11_2922 | | Ribonucleotide reductase transcriptional regulator NrdR | — | — |
| Variovorax sp. OAS795 | 0.53 | ABID97_RS10725 | | peptidoglycan DD-metalloendopeptidase family protein | 0.77 | ABID97_RS17895 | | transcriptional regulator NrdR | low | > 91 |
| Burkholderia phytofirmans PsJN | 0.50 | BPHYT_RS09110 | | peptidase M23 | 0.56 | BPHYT_RS03730 | | transcriptional repressor NrdR | — | — |
| Paraburkholderia graminis OAS925 | 0.49 | ABIE53_002056 | | lipoprotein NlpD | 0.57 | ABIE53_000889 | | transcriptional repressor NrdR | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.47 | H281DRAFT_00843 | | lipoprotein NlpD | 0.56 | H281DRAFT_04727 | | transcriptional repressor NrdR | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.47 | QEN71_RS22245 | | peptidoglycan DD-metalloendopeptidase family protein | 0.56 | QEN71_RS26230 | | transcriptional regulator NrdR | — | — |
| Dechlorosoma suillum PS | 0.46 | Dsui_1970 | | metalloendopeptidase-like membrane protein | 0.64 | Dsui_1266 | | transcriptional regulator NrdR | low | > 51 |
| Cupriavidus basilensis FW507-4G11 | 0.45 | RR42_RS13190 | | outer membrane metallopeptidase lipoprotein nlpD | 0.68 | RR42_RS15490 | | NrdR family transcriptional regulator | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.42 | HSERO_RS14835 | | peptidase M23 | 0.67 | HSERO_RS06145 | | NrdR family transcriptional regulator | low | > 78 |
| Ralstonia solanacearum PSI07 | 0.42 | RPSI07_RS18145 | | LysM peptidoglycan-binding domain-containing protein | 0.68 | RPSI07_RS20335 | | transcriptional regulator NrdR | low | > 81 |
| Ralstonia solanacearum UW163 | 0.42 | UW163_RS12695 | | hypothetical protein | 0.68 | UW163_RS00675 | | transcriptional regulator NrdR | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.42 | RALBFv3_RS15230 | | hypothetical protein | 0.68 | RALBFv3_RS12890 | | transcriptional regulator NrdR | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS06040 | | LysM peptidoglycan-binding domain-containing protein | 0.68 | RS_RS03665 | | transcriptional regulator NrdR | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.41 | ABZR87_RS10870 | | peptidoglycan DD-metalloendopeptidase family protein | 0.68 | ABZR87_RS08950 | | transcriptional regulator NrdR | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.38 | AO353_16610 | | peptigoglycan-binding protein LysM | 0.50 | AO353_06720 | | NrdR family transcriptional regulator | — | — |
| Pseudomonas putida KT2440 | 0.36 | PP_1622 | | metallopeptidase, M23B subfamily | 0.50 | PP_0513 | | DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.35 | Psyr_1373 | | Peptidoglycan-binding LysM:Peptidase M23B | 0.50 | Psyr_4463 | | Protein of unknown function DUF193 | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.35 | Psyr_1373 | | Peptidoglycan-binding LysM:Peptidase M23B | 0.50 | Psyr_4463 | | Protein of unknown function DUF193 | low | > 86 |
| Pseudomonas fluorescens SBW25-INTG | 0.34 | PFLU_RS06425 | | peptidoglycan DD-metalloendopeptidase family protein | 0.49 | PFLU_RS26905 | | transcriptional regulator NrdR | — | — |
| Pseudomonas fluorescens SBW25 | 0.34 | PFLU_RS06425 | | peptidoglycan DD-metalloendopeptidase family protein | 0.49 | PFLU_RS26905 | | transcriptional regulator NrdR | — | — |
| Kangiella aquimarina DSM 16071 | 0.34 | B158DRAFT_2299 | | Membrane proteins related to metalloendopeptidases | 0.49 | B158DRAFT_1909 | | transcriptional regulator NrdR | low | > 40 |
| Pseudomonas sp. S08-1 | 0.34 | OH686_18180 | | Murein hydrolase activator NlpD | 0.48 | OH686_15690 | | transcriptional regulator NrdR | low | > 80 |
| Castellaniella sp019104865 MT123 | 0.34 | ABCV34_RS03040 | | peptidoglycan DD-metalloendopeptidase family protein | 0.55 | ABCV34_RS10550 | | transcriptional regulator NrdR | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.33 | AO356_05890 | | peptigoglycan-binding protein LysM | 0.49 | AO356_14925 | | NrdR family transcriptional regulator | — | — |
| Pseudomonas stutzeri RCH2 | 0.33 | Psest_2807 | | Membrane proteins related to metalloendopeptidases | 0.49 | Psest_3553 | | transcriptional regulator NrdR | — | — |
| Alteromonas macleodii MIT1002 | 0.33 | MIT1002_00626 | | Murein hydrolase activator NlpD precursor | 0.48 | MIT1002_02701 | | Transcriptional repressor NrdR | low | > 70 |
| Klebsiella michiganensis M5al | 0.32 | BWI76_RS22650 | | lipoprotein NlpD | 0.48 | BWI76_RS06345 | | transcriptional regulator NrdR | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.32 | Xcc-8004.3127.1 | | Lipoprotein NlpD | 0.52 | Xcc-8004.4397.1 | | Ribonucleotide reductase transcriptional regulator NrdR | — | — |
| Shewanella sp. ANA-3 | 0.30 | Shewana3_1123 | | peptidase M23B (RefSeq) | 0.48 | Shewana3_1095 | nrdR | transcriptional regulator NrdR (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.29 | Shew_1212 | | peptidase M23B (RefSeq) | 0.47 | Shew_1186 | | transcriptional regulator NrdR (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.29 | Sama_1043 | | lipoprotein NlpD (RefSeq) | 0.48 | Sama_1015 | nrdR | transcriptional regulator NrdR (RefSeq) | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.29 | CSW01_02830 | | murein hydrolase activator NlpD | 0.48 | CSW01_11565 | | transcriptional regulator NrdR | low | > 62 |
| Shewanella oneidensis MR-1 | 0.29 | SO3433 | nlpD | lipoprotein NlpD (NCBI ptt file) | 0.48 | SO3470 | | conserved hypothetical protein TIGR00244 (NCBI ptt file) | low | > 76 |
| Lysobacter sp. OAE881 | 0.29 | ABIE51_RS06500 | | peptidoglycan DD-metalloendopeptidase family protein | 0.51 | ABIE51_RS04625 | | transcriptional regulator NrdR | — | — |
| Acinetobacter radioresistens SK82 | 0.27 | MPMX26_01055 | | Murein hydrolase activator NlpD | 0.46 | MPMX26_00151 | | Transcriptional repressor NrdR | low | > 36 |