Conservation of cofitness between PS417_13940 and PS417_23950 in Pseudomonas simiae WCS417

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_13940 racemase 1.0 PS417_23950 polynucleotide phosphorylase/polyadenylase 0.53 13
Pseudomonas fluorescens SBW25 0.91 PFLU_RS14675 aspartate/glutamate racemase family protein 0.99 PFLU_RS25790 polyribonucleotide nucleotidyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS14675 aspartate/glutamate racemase family protein 0.99 PFLU_RS25790 polyribonucleotide nucleotidyltransferase low > 109
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_4650 Aspartate racemase (EC 5.1.1.13) 0.97 Pf1N1B4_1156 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) — —
Pseudomonas sp. RS175 0.84 PFR28_02199 L-aspartate/glutamate-specific racemase 0.97 PFR28_00094 Polyribonucleotide nucleotidyltransferase — —
Azospirillum sp. SherDot2 0.60 MPMX19_06238 L-aspartate/glutamate-specific racemase 0.57 MPMX19_02526 Polyribonucleotide nucleotidyltransferase — —
Caulobacter crescentus NA1000 0.58 CCNA_03387 aspartate racemase 0.54 CCNA_00033 polyribonucleotide nucleotidyltransferase/polynucleotide adenylyltransferase — —
Caulobacter crescentus NA1000 Δfur 0.58 CCNA_03387 aspartate racemase 0.54 CCNA_00033 polyribonucleotide nucleotidyltransferase/polynucleotide adenylyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_00459 aspartate racemase 0.59 H281DRAFT_04562 polyribonucleotide nucleotidyltransferase low > 103
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS12885 aspartate racemase 0.59 BPHYT_RS06600 polynucleotide phosphorylase/polyadenylase low > 109
Castellaniella sp019104865 MT123 0.57 ABCV34_RS07215 aspartate/glutamate racemase family protein 0.60 ABCV34_RS01240 polyribonucleotide nucleotidyltransferase — —
Paraburkholderia graminis OAS925 0.57 ABIE53_002800 aspartate racemase 0.60 ABIE53_001586 polyribonucleotide nucleotidyltransferase low > 113
Escherichia coli Nissle 1917 0.56 ECOLIN_RS15940 amino acid racemase 0.61 ECOLIN_RS18175 polyribonucleotide nucleotidyltransferase low > 55
Escherichia fergusonii Becca 0.56 EFB2_01043 L-aspartate/glutamate-specific racemase 0.61 EFB2_00659 Polyribonucleotide nucleotidyltransferase low > 86
Escherichia coli ECOR38 0.56 HEPCGN_19575 ygeA amino acid racemase 0.61 HEPCGN_17015 pnp polyribonucleotide nucleotidyltransferase — —
Escherichia coli ECRC100 0.56 OKFHMN_19935 ygeA amino acid racemase 0.61 OKFHMN_18140 pnp polyribonucleotide nucleotidyltransferase low > 80
Escherichia coli ECRC101 0.56 MCAODC_10460 ygeA amino acid racemase 0.61 MCAODC_08660 pnp polyribonucleotide nucleotidyltransferase low > 87
Escherichia coli ECRC102 0.56 NIAGMN_17705 ygeA amino acid racemase 0.61 NIAGMN_15900 pnp polyribonucleotide nucleotidyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_00889 Putative racemase YgeA 0.61 OHPLBJKB_00536 Polyribonucleotide nucleotidyltransferase low > 73
Escherichia coli ECRC99 0.56 KEDOAH_08195 ygeA amino acid racemase 0.61 KEDOAH_10010 pnp polyribonucleotide nucleotidyltransferase — —
Escherichia coli ECRC98 0.56 JDDGAC_23600 ygeA amino acid racemase 0.61 JDDGAC_21765 pnp polyribonucleotide nucleotidyltransferase low > 86
Escherichia coli ECOR27 0.56 NOLOHH_11820 ygeA amino acid racemase 0.61 NOLOHH_09940 pnp polyribonucleotide nucleotidyltransferase low > 75
Escherichia coli BL21 0.56 ECD_02688 Asp/Glu_racemase family protein 0.61 ECD_03031 polynucleotide phosphorylase/polyadenylase low > 61
Escherichia coli ECRC62 0.56 BNILDI_10300 ygeA amino acid racemase 0.61 BNILDI_01595 pnp polyribonucleotide nucleotidyltransferase low > 75
Shewanella amazonensis SB2B 0.55 Sama_2886 hypothetical protein (RefSeq) 0.61 Sama_0966 polynucleotide phosphorylase/polyadenylase (RefSeq) — —
Lysobacter sp. OAE881 0.55 ABIE51_RS00965 aspartate/glutamate racemase family protein 0.58 ABIE51_RS08415 polyribonucleotide nucleotidyltransferase — —
Escherichia coli BW25113 0.55 b2840 ygeA predicted racemase (NCBI) 0.61 b3164 pnp polynucleotide phosphorylase/polyadenylase (RefSeq) low > 76
Marinobacter adhaerens HP15 0.55 HP15_1403 aspartate racemase 0.70 HP15_3063 polynucleotide phosphorylase/polyadenylase — —
Pantoea sp. MT58 0.55 IAI47_18995 aspartate/glutamate racemase family protein 0.62 IAI47_17005 polyribonucleotide nucleotidyltransferase low > 76
Xanthomonas campestris pv. campestris strain 8004 0.55 Xcc-8004.3035.1 Aspartate racemase (EC 5.1.1.13) 0.59 Xcc-8004.2006.1 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) — —
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS11025 aspartate racemase 0.59 RR42_RS05485 polynucleotide phosphorylase/polyadenylase low > 128
Pectobacterium carotovorum WPP14 0.54 HER17_RS15295 aspartate/glutamate racemase family protein 0.62 HER17_RS18190 polyribonucleotide nucleotidyltransferase — —
Rhodanobacter denitrificans MT42 0.54 LRK55_RS05145 aspartate/glutamate racemase family protein 0.59 LRK55_RS00800 polyribonucleotide nucleotidyltransferase — —
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS05370 aspartate/glutamate racemase family protein 0.59 LRK54_RS01025 polyribonucleotide nucleotidyltransferase — —
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS09275 aspartate/glutamate racemase family protein 0.59 ABZR86_RS06005 polyribonucleotide nucleotidyltransferase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.53 GFF1325 Aspartate racemase (EC 5.1.1.13) 0.61 GFF1502 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) low > 78
Enterobacter sp. TBS_079 0.53 MPMX20_03707 L-aspartate/glutamate-specific racemase 0.62 MPMX20_04068 Polyribonucleotide nucleotidyltransferase — —
Enterobacter asburiae PDN3 0.53 EX28DRAFT_2918 aspartate racemase 0.62 EX28DRAFT_3213 polyribonucleotide nucleotidyltransferase — —
Rhizobium sp. OAE497 0.52 ABIE40_RS11390 aspartate/glutamate racemase family protein 0.57 ABIE40_RS00355 polyribonucleotide nucleotidyltransferase — —
Alteromonas macleodii MIT1002 0.52 MIT1002_04020 Aspartate racemase 0.60 MIT1002_01888 Polyribonucleotide nucleotidyltransferase — —
Fusobacterium nucleatum SB010 0.51 HUW76_08040 aspartate/glutamate racemase family protein 0.44 HUW76_01280 polyribonucleotide nucleotidyltransferase — —
Klebsiella michiganensis M5al 0.51 BWI76_RS23370 aspartate/glutamate racemase 0.62 BWI76_RS25065 polyribonucleotide nucleotidyltransferase 0.17 11
Serratia liquefaciens MT49 0.51 IAI46_18225 aspartate/glutamate racemase family protein 0.62 IAI46_01955 polyribonucleotide nucleotidyltransferase low > 86
Rahnella sp. WP5 0.51 EX31_RS20045 aspartate/glutamate racemase family protein 0.62 EX31_RS08520 polyribonucleotide nucleotidyltransferase low > 89
Pseudomonas sp. S08-1 0.51 OH686_18340 Aspartate racemase 0.92 OH686_17165 polyribonucleotide nucleotidyltransferase low > 80
Bosea sp. OAE506 0.48 ABIE41_RS12895 aspartate/glutamate racemase family protein 0.56 ABIE41_RS04595 polyribonucleotide nucleotidyltransferase — —
Sinorhizobium meliloti 1021 0.47 SMc01404 aspartate racemase 0.54 SMc00324 polynucleotide phosphorylase/polyadenylase — —
Agrobacterium fabrum C58 0.47 Atu4081 aspartate racemase 0.56 Atu0082 polyribonucleotide nucleotidyltransferase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS09200 aspartate/glutamate racemase family protein 0.39 ABZR88_RS06490 polyribonucleotide nucleotidyltransferase — —
Dinoroseobacter shibae DFL-12 0.40 Dshi_2199 aspartate racemase (RefSeq) 0.54 Dshi_2997 Polyribonucleotide nucleotidyltransferase (RefSeq) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.38 Echvi_3874 aspartate racemase 0.38 Echvi_3436 polyribonucleotide nucleotidyltransferase — —
Azospirillum brasilense Sp245 0.37 AZOBR_RS21090 aspartate racemase 0.57 AZOBR_RS01385 polynucleotide phosphorylase — —
Ralstonia solanacearum GMI1000 0.26 RS_RS01050 aspartate/glutamate racemase family protein 0.59 RS_RS10375 polyribonucleotide nucleotidyltransferase low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.25 GFF2459 Aspartate racemase (EC 5.1.1.13) 0.59 GFF3677 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) — —
Variovorax sp. OAS795 0.24 ABID97_RS21720 amino acid racemase 0.59 ABID97_RS20520 polyribonucleotide nucleotidyltransferase low > 91
Variovorax sp. SCN45 0.22 GFF5866 Aspartate racemase (EC 5.1.1.13) 0.59 GFF4746 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) — —

Not shown: 1 genomes with orthologs for PS417_13940 only; 45 genomes with orthologs for PS417_23950 only