Conservation of cofitness between GFF5763 and GFF4456 in Variovorax sp. SCN45

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF5763 Signal transduction histidine kinase CheA 1.0 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.52 12
Cupriavidus basilensis FW507-4G11 0.58 RR42_RS35805 chemotaxis protein CheA 0.38 RR42_RS17645 shikimate dehydrogenase low > 128
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS19000 chemotaxis protein CheA 0.41 BPHYT_RS16975 shikimate 5-dehydrogenase low > 109
Erwinia tracheiphila SCR3 0.56 LU632_RS13560 cheA chemotaxis protein CheA 0.31 LU632_RS22445 aroE shikimate dehydrogenase low > 74
Pantoea sp. MT58 0.56 IAI47_08300 chemotaxis protein CheA 0.36 IAI47_02315 shikimate dehydrogenase — —
Enterobacter sp. TBS_079 0.56 MPMX20_02798 Chemotaxis protein CheA 0.33 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF1669 Signal transduction histidine kinase CheA (EC 2.7.3.-) 0.33 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 78
Dickeya dianthicola ME23 0.56 DZA65_RS14075 chemotaxis protein CheA 0.31 DZA65_RS20315 shikimate dehydrogenase — —
Dickeya dadantii 3937 0.55 DDA3937_RS13545 chemotaxis protein CheA 0.32 DDA3937_RS19100 shikimate dehydrogenase — —
Enterobacter asburiae PDN3 0.55 EX28DRAFT_0662 Chemotaxis protein histidine kinase and related kinases 0.33 EX28DRAFT_0046 shikimate dehydrogenase low > 76
Dickeya dianthicola 67-19 0.55 HGI48_RS13590 chemotaxis protein CheA 0.31 HGI48_RS19190 shikimate dehydrogenase — —
Rahnella sp. WP5 0.55 EX31_RS11405 chemotaxis protein CheA 0.33 EX31_RS15950 shikimate dehydrogenase — —
Escherichia coli ECRC100 0.55 OKFHMN_26120 cheA chemotaxis protein CheA 0.37 OKFHMN_17565 aroE shikimate dehydrogenase low > 80
Escherichia coli ECRC102 0.55 NIAGMN_01940 cheA chemotaxis protein CheA 0.37 NIAGMN_15325 aroE shikimate dehydrogenase — —
Escherichia coli ECRC101 0.55 MCAODC_19285 cheA chemotaxis protein CheA 0.37 MCAODC_08085 aroE shikimate dehydrogenase low > 87
Escherichia coli ECRC98 0.55 JDDGAC_00695 cheA chemotaxis protein CheA 0.37 JDDGAC_21185 aroE shikimate dehydrogenase low > 86
Escherichia coli ECRC99 0.55 KEDOAH_01985 cheA chemotaxis protein CheA 0.37 KEDOAH_10585 aroE shikimate dehydrogenase — —
Escherichia coli BL21 0.55 ECD_01859 fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein 0.37 ECD_03132 dehydroshikimate reductase, NAD(P)-binding low > 61
Escherichia coli Nissle 1917 0.54 ECOLIN_RS10780 chemotaxis protein CheA 0.36 ECOLIN_RS18840 shikimate dehydrogenase — —
Escherichia coli ECOR27 0.54 NOLOHH_16560 cheA chemotaxis protein CheA 0.37 NOLOHH_09355 aroE shikimate dehydrogenase low > 75
Escherichia fergusonii Becca 0.54 EFB2_02055 Chemotaxis protein CheA 0.36 EFB2_00542 Shikimate dehydrogenase (NADP(+)) low > 86
Escherichia coli ECRC62 0.54 BNILDI_15350 cheA chemotaxis protein CheA 0.37 BNILDI_02165 aroE shikimate dehydrogenase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_01840 Chemotaxis protein CheA 0.37 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) low > 73
Escherichia coli ECOR38 0.54 HEPCGN_04540 cheA chemotaxis protein CheA 0.36 HEPCGN_16385 aroE shikimate dehydrogenase low > 87
Escherichia coli BW25113 0.54 b1888 cheA fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein (NCBI) 0.37 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) low > 76
Castellaniella sp019104865 MT123 0.54 ABCV34_RS05835 chemotaxis protein CheA 0.36 ABCV34_RS11620 shikimate dehydrogenase low > 48
Pectobacterium carotovorum WPP14 0.54 HER17_RS08100 chemotaxis protein CheA 0.33 HER17_RS02250 shikimate dehydrogenase low > 75
Serratia liquefaciens MT49 0.54 IAI46_16040 chemotaxis protein CheA 0.34 IAI46_23240 shikimate dehydrogenase low > 86
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS17960 chemotaxis protein CheA 0.42 ABZR87_RS01605 shikimate dehydrogenase low > 80
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS14955 chemotaxis protein 0.46 HSERO_RS01990 shikimate 5-dehydrogenase low > 78
Acidovorax sp. GW101-3H11 0.42 Ac3H11_1421 Signal transduction histidine kinase CheA (EC 2.7.3.-) 0.55 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 79
Ralstonia solanacearum GMI1000 0.40 RS_RS23920 chemotaxis protein CheA 0.46 RS_RS13890 shikimate dehydrogenase low > 80
Shewanella oneidensis MR-1 0.39 SO2121 cheA chemotaxis protein CheA (NCBI ptt file) 0.37 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.38 Shewana3_2218 CheA signal transduction histidine kinases (RefSeq) 0.40 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.36 Sama_3495 putative CheA signal transduction histidine kinase (RefSeq) 0.35 Sama_0052 shikimate dehydrogenase (RefSeq) low > 62
Shewanella loihica PV-4 0.36 Shew_0113 CheA signal transduction histidine kinase (RefSeq) 0.35 Shew_3727 shikimate 5-dehydrogenase (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.34 CSW01_19550 chemotaxis protein CheA 0.41 CSW01_00280 shikimate dehydrogenase low > 62
Caulobacter crescentus NA1000 Δfur 0.30 CCNA_00442 chemotaxis histidine kinase protein cheAI 0.19 CCNA_00003 shikimate 5-dehydrogenase low > 67
Caulobacter crescentus NA1000 0.30 CCNA_00442 chemotaxis histidine kinase protein cheAI 0.19 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) low > 66
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS24990 chemotaxis protein CheA 0.41 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.28 PFLU_RS24990 chemotaxis protein CheA 0.41 PFLU_RS00120 shikimate dehydrogenase — —
Desulfovibrio vulgaris Hildenborough JW710 0.28 DVU1594 cheA-1 chemotaxis protein CheA (TIGR) 0.21 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) — —
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_22670 chemotaxis protein CheA 0.43 AO356_11315 shikimate dehydrogenase low > 104
Pseudomonas fluorescens FW300-N2E2 0.27 Pf6N2E2_418 Signal transduction histidine kinase CheA (EC 2.7.3.-) 0.42 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Desulfovibrio vulgaris Miyazaki F 0.27 DvMF_0467 CheA signal transduction histidine kinase (RefSeq) 0.17 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) — —
Rhodopseudomonas palustris CGA009 0.25 TX73_000730 chemotaxis protein CheA 0.19 TX73_022410 shikimate dehydrogenase — —
Marinobacter adhaerens HP15 0.24 HP15_2298 chemotaxis histidine kinase 0.39 HP15_3750 shikimate dehydrogenase — —

Not shown: 3 genomes with orthologs for GFF5763 only; 43 genomes with orthologs for GFF4456 only