Conservation of cofitness between PS417_07035 and PS417_21515 in Pseudomonas simiae WCS417

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_07035 uracil-DNA glycosylase 1.0 PS417_21515 transcriptional regulator 0.39 8
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS07110 uracil-DNA glycosylase 0.99 PFLU_RS23130 response regulator transcription factor low > 109
Pseudomonas fluorescens SBW25 0.99 PFLU_RS07110 uracil-DNA glycosylase 0.99 PFLU_RS23130 response regulator transcription factor low > 109
Pseudomonas lactucae CFBP13502 0.97 GEMAOFIL_01559 Uracil-DNA glycosylase 1.00 GEMAOFIL_04447 Virulence transcriptional regulatory protein PhoP low > 93
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_17560 uracil-DNA glycosylase 0.96 AO353_02815 transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N1B4 0.94 Pf1N1B4_3309 Uracil-DNA glycosylase, family 1 0.95 Pf1N1B4_3483 Transcriptional regulatory protein PhoP low > 87
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_4530 Uracil-DNA glycosylase, family 1 0.93 PfGW456L13_2011 Transcriptional regulatory protein PhoP low > 87
Pseudomonas sp. RS175 0.93 PFR28_00677 Uracil-DNA glycosylase 0.91 PFR28_03244 Transcriptional regulatory protein PhoP low > 88
Pseudomonas sp. DMC3 0.93 GFF2266 Uracil-DNA glycosylase 0.95 GFF4840 Virulence transcriptional regulatory protein PhoP low > 89
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_2772 Uracil-DNA glycosylase, family 1 0.94 Pf6N2E2_5704 Transcriptional regulatory protein PhoP low > 103
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_04635 uracil-DNA glycosylase 0.93 AO356_18965 transcriptional regulator low > 104
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_3970 Uracil-DNA glycosylase 0.89 Psyr_3709 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_3970 Uracil-DNA glycosylase 0.89 Psyr_3709 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Pseudomonas sp. SVBP6 0.88 COO64_RS16445 ung uracil-DNA glycosylase 0.94 COO64_RS07420 response regulator low > 93
Pseudomonas putida KT2440 0.85 PP_1413 Uracil-DNA glycosylase 0.88 PP_1186 two component system DNA-binding transcriptional dual regulator low > 96
Pseudomonas sp. BP01 0.84 JOY50_RS14600 ung uracil-DNA glycosylase 0.89 JOY50_RS01975 response regulator low > 84
Pseudomonas aeruginosa PA14 0.78 IKLFDK_03200 uracil-DNA glycosylase 0.86 IKLFDK_05465 two-component system response regulator PhoP low > 100
Pseudomonas stutzeri RCH2 0.77 Psest_3107 uracil-DNA glycosylase 0.80 Psest_3883 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 67
Dyella japonica UNC79MFTsu3.2 0.62 ABZR86_RS12580 uracil-DNA glycosylase 0.52 ABZR86_RS18360 response regulator transcription factor low > 74
Rhodanobacter denitrificans FW104-10B01 0.62 LRK54_RS10940 uracil-DNA glycosylase 0.51 LRK54_RS05985 response regulator transcription factor low > 59
Rhodanobacter denitrificans MT42 0.62 LRK55_RS10645 uracil-DNA glycosylase 0.51 LRK55_RS05740 response regulator transcription factor — —
Lysobacter sp. OAE881 0.62 ABIE51_RS02100 uracil-DNA glycosylase 0.52 ABIE51_RS03940 response regulator transcription factor low > 62
Rhodanobacter sp. FW510-T8 0.62 OKGIIK_12930 ung uracil-DNA glycosylase 0.50 OKGIIK_00635 ompR DNA-binding response regulator — —
Rhodanobacter sp000427505 FW510-R12 0.61 LRK53_RS03730 uracil-DNA glycosylase 0.51 LRK53_RS17390 response regulator transcription factor — —
Xanthomonas campestris pv. campestris strain 8004 0.60 Xcc-8004.4773.1 Uracil-DNA glycosylase, family 1 0.51 Xcc-8004.5008.1 Two-component system regulatory protein — —
Dickeya dadantii 3937 0.57 DDA3937_RS15790 uracil-DNA glycosylase 0.44 DDA3937_RS11500 two-component system response regulator PhoP low > 74
Dickeya dianthicola 67-19 0.56 HGI48_RS15875 uracil-DNA glycosylase 0.45 HGI48_RS11545 two-component system response regulator PhoP low > 71
Pectobacterium carotovorum WPP14 0.56 HER17_RS05755 uracil-DNA glycosylase 0.46 HER17_RS11640 two-component system response regulator PhoP low > 75
Dickeya dianthicola ME23 0.56 DZA65_RS16955 uracil-DNA glycosylase 0.45 DZA65_RS11880 two-component system response regulator PhoP low > 75
Rahnella sp. WP5 0.55 EX31_RS21775 uracil-DNA glycosylase 0.51 EX31_RS24560 two-component system response regulator PhoP low > 89
Serratia liquefaciens MT49 0.55 IAI46_19620 uracil-DNA glycosylase 0.50 IAI46_10395 two-component system response regulator PhoP low > 86
Alteromonas macleodii MIT1002 0.54 MIT1002_03083 Uracil-DNA glycosylase 0.47 MIT1002_01421 Transcriptional regulatory protein PhoP low > 70
Shewanella loihica PV-4 0.54 Shew_3073 uracil-DNA glycosylase (RefSeq) 0.55 Shew_2348 two component transcriptional regulator (RefSeq) — —
Erwinia amylovora T8 0.54 OLJFJH_10190 uracil-DNA glycosylase 0.47 OLJFJH_15270 two-component system response regulator PhoP low > 58
Shewanella amazonensis SB2B 0.53 Sama_2831 uracil-DNA glycosylase (RefSeq) 0.53 Sama_1542 response regulator receiver protein (RefSeq) — —
Shewanella sp. ANA-3 0.53 Shewana3_3221 uracil-DNA glycosylase (RefSeq) 0.52 Shewana3_1724 two component transcriptional regulator (RefSeq) low > 73
Escherichia coli ECOR38 0.52 HEPCGN_20465 ung uracil-DNA glycosylase 0.50 HEPCGN_24200 phoP two-component system response regulator PhoP low > 88
Escherichia fergusonii Becca 0.52 EFB2_01316 Uracil-DNA glycosylase 0.50 EFB2_02845 Transcriptional regulatory protein PhoP low > 86
Escherichia coli ECRC99 0.52 KEDOAH_06880 ung uracil-DNA glycosylase 0.49 KEDOAH_24815 phoP two-component system response regulator PhoP — —
Escherichia coli ECRC98 0.52 JDDGAC_25005 ung uracil-DNA glycosylase 0.49 JDDGAC_06635 phoP two-component system response regulator PhoP low > 87
Escherichia coli ECRC100 0.52 OKFHMN_21340 ung uracil-DNA glycosylase 0.49 OKFHMN_00730 phoP two-component system response regulator PhoP low > 79
Escherichia coli ECRC62 0.52 BNILDI_11815 ung uracil-DNA glycosylase 0.50 BNILDI_19080 phoP two-component system response regulator PhoP low > 75
Escherichia coli ECRC101 0.52 MCAODC_11870 ung uracil-DNA glycosylase 0.49 MCAODC_22355 phoP two-component system response regulator PhoP low > 88
Escherichia coli Nissle 1917 0.52 ECOLIN_RS14600 uracil-DNA glycosylase 0.50 ECOLIN_RS06610 two-component system response regulator PhoP — —
Escherichia coli ECRC102 0.52 NIAGMN_19110 ung uracil-DNA glycosylase 0.49 NIAGMN_24875 phoP two-component system response regulator PhoP low > 80
Escherichia coli BL21 0.52 ECD_02474 uracil-DNA-glycosylase 0.50 ECD_01128 response regulator in two-component regulatory system with PhoQ — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_01126 Uracil-DNA glycosylase 0.50 OHPLBJKB_02538 Transcriptional regulatory protein PhoP low > 74
Escherichia coli BW25113 0.52 b2580 ung uracil-DNA glycosylase (NCBI) 0.50 b1130 phoP DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) low > 76
Escherichia coli ECOR27 0.52 NOLOHH_13010 ung uracil-DNA glycosylase 0.50 NOLOHH_20915 phoP two-component system response regulator PhoP low > 76
Shewanella oneidensis MR-1 0.52 SO3654 ung uracil-DNA glycosylase (NCBI ptt file) 0.52 SO1946 phoP transcriptional regulatory protein PhoP (NCBI ptt file) low > 76
Klebsiella pneumoniae MKP103 0.52 KDGMDA_28505 uracil-DNA glycosylase 0.51 KDGMDA_18880 two-component system response regulator PhoP low > 95
Erwinia tracheiphila HP pepo 2.2 0.51 IJEDHG_26910 ung uracil-DNA glycosylase 0.47 IJEDHG_00380 phoP two-component system response regulator PhoP low > 61
Erwinia tracheiphila SCR3 0.51 LU632_RS16970 ung uracil-DNA glycosylase 0.47 LU632_RS14590 phoP two-component system response regulator PhoP low > 74
Enterobacter sp. TBS_079 0.51 MPMX20_03449 Uracil-DNA glycosylase 0.49 MPMX20_01811 Transcriptional regulatory protein PhoP low > 85
Kangiella aquimarina DSM 16071 0.51 B158DRAFT_1441 Uracil-DNA glycosylase (EC 3.2.2.-) 0.52 B158DRAFT_1560 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 40
Enterobacter asburiae PDN3 0.51 EX28DRAFT_0067 Uracil-DNA glycosylase (EC 3.2.2.-) 0.49 EX28DRAFT_1800 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF2100 Uracil-DNA glycosylase, family 1 0.51 GFF3415 Transcriptional regulatory protein PhoP low > 78
Klebsiella michiganensis M5al 0.50 BWI76_RS21380 uracil-DNA glycosylase 0.51 BWI76_RS11280 two-component system response regulator PhoP — —
Pantoea agglomerans CFBP13505 P0401 0.49 PagCFBP13505_RS14715 uracil-DNA glycosylase 0.48 PagCFBP13505_RS19455 two-component system response regulator PhoP low > 74
Pantoea sp. MT58 0.49 IAI47_04825 uracil-DNA glycosylase 0.48 IAI47_11930 two-component system response regulator PhoP low > 76

Not shown: 42 genomes with orthologs for PS417_07035 only; 2 genomes with orthologs for PS417_21515 only