Conservation of cofitness between PS417_16525 and PS417_21010 in Pseudomonas simiae WCS417

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_16525 isocitrate dehydrogenase 1.0 PS417_21010 ribonuclease activity regulator protein RraA 0.34 5
Pseudomonas fluorescens SBW25 0.99 PFLU_RS18565 NADP-dependent isocitrate dehydrogenase 1.00 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase low > 109
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS18565 NADP-dependent isocitrate dehydrogenase 1.00 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase low > 109
Pseudomonas sp. RS175 0.98 PFR28_02616 Isocitrate dehydrogenase [NADP] 0.94 PFR28_01040 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase low > 88
Pseudomonas fluorescens FW300-N2E2 0.98 Pf6N2E2_289 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) 0.93 Pf6N2E2_2387 Ribonuclease E inhibitor RraA low > 103
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_27690 isocitrate dehydrogenase 0.95 AO353_00850 ribonuclease activity regulator protein RraA low > 101
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_22135 isocitrate dehydrogenase 0.94 AO356_02815 ribonuclease activity regulator protein RraA 0.25 36
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_2643 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) 0.93 PfGW456L13_4110 Ribonuclease E inhibitor RraA 0.28 84
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_4052 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) 0.92 Pf1N1B4_3828 Ribonuclease E inhibitor RraA low > 87
Pseudomonas putida KT2440 0.93 PP_4011 isocitrate dehydrogenase, NADP(+)-specific 0.93 PP_2084 Putative regulator of ribonuclease activity low > 96
Pseudomonas sp. S08-1 0.93 OH686_00220 isocitrate dehydrogenase, NADP-dependent 0.91 OH686_01650 Ribonuclease E inhibitor RraA — —
Pseudomonas stutzeri RCH2 0.90 Psest_2024 isocitrate dehydrogenase, NADP-dependent, prokaryotic type 0.89 Psest_2315 RraA famliy low > 67
Variovorax sp. SCN45 0.79 GFF343 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) 0.39 GFF4367 KEGG: regulator of ribonuclease activity A — —
Ralstonia solanacearum PSI07 0.79 RPSI07_RS12425 NADP-dependent isocitrate dehydrogenase 0.46 RPSI07_RS17355 ribonuclease E inhibitor RraA — —
Escherichia coli ECRC101 0.78 MCAODC_22325 icd NADP-dependent isocitrate dehydrogenase 0.54 MCAODC_04250 rraA ribonuclease E activity regulator RraA — —
Pantoea sp. MT58 0.78 IAI47_11900 NADP-dependent isocitrate dehydrogenase 0.48 IAI47_00840 ribonuclease E activity regulator RraA — —
Escherichia coli ECRC99 0.78 KEDOAH_24845 icd NADP-dependent isocitrate dehydrogenase 0.54 KEDOAH_14410 rraA ribonuclease E activity regulator RraA — —
Escherichia coli ECRC101 0.78 OKFHMN_00760 icd NADP-dependent isocitrate dehydrogenase 0.54 OKFHMN_13750 rraA ribonuclease E activity regulator RraA — —
Cupriavidus basilensis FW507-4G11 0.78 RR42_RS17135 isocitrate dehydrogenase 0.47 RR42_RS12215 ribonuclease low > 128
Escherichia coli ECRC102 0.78 NIAGMN_24905 icd NADP-dependent isocitrate dehydrogenase 0.54 NIAGMN_11505 rraA ribonuclease E activity regulator RraA — —
Escherichia coli BW25113 0.78 b1136 icd isocitrate dehydrogenase (NCBI) 0.54 b3929 rraA ribonuclease activity regulator protein RraA (NCBI) — —
Escherichia coli ECRC98 0.78 JDDGAC_06605 icd NADP-dependent isocitrate dehydrogenase 0.54 JDDGAC_17375 rraA ribonuclease E activity regulator RraA — —
Serratia liquefaciens MT49 0.78 IAI46_10460 NADP-dependent isocitrate dehydrogenase 0.54 IAI46_24585 ribonuclease E activity regulator RraA — —
Escherichia coli ECOR27 0.78 NOLOHH_20885 icd NADP-dependent isocitrate dehydrogenase 0.54 NOLOHH_05895 rraA ribonuclease E activity regulator RraA — —
Escherichia coli ECRC62 0.78 BNILDI_19050 icd NADP-dependent isocitrate dehydrogenase 0.54 BNILDI_05635 rraA ribonuclease E activity regulator RraA — —
Escherichia coli BL21 0.78 ECD_01134 isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase 0.54 ECD_03814 ribonuclease E (RNase E) inhibitor protein — —
Escherichia coli ECOR38 0.78 HEPCGN_24245 icd NADP-dependent isocitrate dehydrogenase 0.54 HEPCGN_12395 rraA ribonuclease E activity regulator RraA — —
Escherichia coli Nissle 1917 0.78 ECOLIN_RS06640 NADP-dependent isocitrate dehydrogenase 0.54 ECOLIN_RS22625 ribonuclease E activity regulator RraA — —
Escherichia fergusonii Becca 0.78 EFB2_02839 Isocitrate dehydrogenase [NADP] 0.54 EFB2_04689 Regulator of ribonuclease activity A — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.78 OHPLBJKB_02532 Isocitrate dehydrogenase [NADP] 0.54 OHPLBJKB_04122 Regulator of ribonuclease activity A — —
Klebsiella michiganensis M5al 0.78 BWI76_RS11330 isocitrate dehydrogenase (NADP(+)) 0.54 BWI76_RS00740 ribonuclease E activity regulator RraA — —
Acinetobacter radioresistens SK82 0.78 MPMX26_01012 Isocitrate dehydrogenase [NADP] 0.55 MPMX26_01316 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase low > 36
Burkholderia phytofirmans PsJN 0.78 BPHYT_RS15730 isocitrate dehydrogenase 0.46 BPHYT_RS12315 ribonuclease — —
Paraburkholderia sabiae LMG 24235 0.78 QEN71_RS02980 NADP-dependent isocitrate dehydrogenase 0.50 QEN71_RS06240 ribonuclease E activity regulator RraA low > 153
Ralstonia solanacearum GMI1000 0.78 RS_RS12485 NADP-dependent isocitrate dehydrogenase 0.43 RS_RS06790 ribonuclease E inhibitor RraA — —
Ralstonia solanacearum IBSBF1503 0.78 RALBFv3_RS04855 isocitrate dehydrogenase (NADP(+)) 0.46 RALBFv3_RS00130 ribonuclease — —
Ralstonia solanacearum UW163 0.78 UW163_RS08770 isocitrate dehydrogenase (NADP(+)) 0.46 UW163_RS13460 ribonuclease — —
Rahnella sp. WP5 0.77 EX31_RS24590 NADP-dependent isocitrate dehydrogenase 0.54 EX31_RS14255 ribonuclease E activity regulator RraA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF3422 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) 0.54 GFF2311 Ribonuclease E inhibitor RraA — —
Ralstonia sp. UNC404CL21Col 0.77 ABZR87_RS00460 NADP-dependent isocitrate dehydrogenase 0.43 ABZR87_RS11580 ribonuclease E activity regulator RraA — —
Enterobacter sp. TBS_079 0.77 MPMX20_01820 Isocitrate dehydrogenase [NADP] 0.54 MPMX20_04540 Regulator of ribonuclease activity A — —
Enterobacter asburiae PDN3 0.77 EX28DRAFT_1794 isocitrate dehydrogenase (NADP) (EC 1.1.1.42) 0.54 EX28DRAFT_4402 regulator of ribonuclease activity A — —
Erwinia tracheiphila SCR3 0.77 LU632_RS14560 icd NADP-dependent isocitrate dehydrogenase 0.54 LU632_RS19685 rraA ribonuclease E activity regulator RraA — —
Acidovorax sp. GW101-3H11 0.77 Ac3H11_2377 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) 0.45 Ac3H11_2834 Ribonuclease E inhibitor RraA low > 79
Pectobacterium carotovorum WPP14 0.77 HER17_RS11610 NADP-dependent isocitrate dehydrogenase 0.54 HER17_RS00840 ribonuclease E activity regulator RraA — —
Dickeya dadantii 3937 0.76 DDA3937_RS11470 NADP-dependent isocitrate dehydrogenase 0.52 DDA3937_RS00905 ribonuclease E activity regulator RraA — —
Dickeya dianthicola ME23 0.76 DZA65_RS11850 NADP-dependent isocitrate dehydrogenase 0.51 DZA65_RS21515 ribonuclease E activity regulator RraA — —
Dickeya dianthicola 67-19 0.76 HGI48_RS11515 NADP-dependent isocitrate dehydrogenase 0.52 HGI48_RS20470 ribonuclease E activity regulator RraA — —
Herbaspirillum seropedicae SmR1 0.75 HSERO_RS07015 isocitrate dehydrogenase 0.46 HSERO_RS10555 ribonuclease low > 78
Dechlorosoma suillum PS 0.70 Dsui_3296 isocitrate dehydrogenase, NADP-dependent, prokaryotic type 0.58 Dsui_0010 RraA family protein low > 51
Shewanella sp. ANA-3 0.22 Shewana3_2890 isocitrate dehydrogenase (RefSeq) 0.59 Shewana3_3723 ribonuclease activity regulator protein RraA (RefSeq) — —
Lysobacter sp. OAE881 0.22 ABIE51_RS14200 isocitrate dehydrogenase 0.49 ABIE51_RS04140 ribonuclease E activity regulator RraA — —
Shewanella oneidensis MR-1 0.22 SO1538 isocitrate dehydrogenase, NAD-dependent (NCBI ptt file) 0.58 SO4197 menG-2 S-adenosylmethionine:2-demethylmenaquinone methyltransferase (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.21 Sama_2423 isocitrate dehydrogenase (RefSeq) 0.57 Sama_3200 ribonuclease activity regulator protein RraA (RefSeq) — —
Xanthomonas campestris pv. campestris strain 8004 0.21 Xcc-8004.4057.1 Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) 0.57 Xcc-8004.1848.1 Ribonuclease E inhibitor RraA — —

Not shown: 15 genomes with orthologs for PS417_16525 only; 9 genomes with orthologs for PS417_21010 only