Conservation of cofitness between GFF4099 and GFF3881 in Hydrogenophaga sp. GW460-11-11-14-LB1

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF4099 Fumarate hydratase class I, aerobic (EC 4.2.1.2) 1.0 GFF3881 Lipoprotein NlpD 0.72 4
Acidovorax sp. GW101-3H11 0.92 Ac3H11_941 Fumarate hydratase class I, aerobic (EC 4.2.1.2) 0.55 Ac3H11_1786 Lipoprotein NlpD
Variovorax sp. OAS795 0.91 ABID97_RS17550 fumarate hydratase 0.53 ABID97_RS10725 peptidoglycan DD-metalloendopeptidase family protein low > 91
Variovorax sp. SCN45 0.91 GFF483 Fumarate hydratase class I, aerobic (EC 4.2.1.2) 0.56 GFF2843 Murein hydrolase activator NlpD low > 127
Herbaspirillum seropedicae SmR1 0.82 HSERO_RS07760 fumarate hydratase 0.42 HSERO_RS14835 peptidase M23
Cupriavidus basilensis FW507-4G11 0.78 RR42_RS13905 fumarate hydratase 0.45 RR42_RS13190 outer membrane metallopeptidase lipoprotein nlpD low > 128
Ralstonia solanacearum PSI07 0.78 RPSI07_RS14865 fumarate hydratase 0.42 RPSI07_RS18145 LysM peptidoglycan-binding domain-containing protein low > 81
Paraburkholderia bryophila 376MFSha3.1 0.77 H281DRAFT_04956 fumarase, class I, homodimeric 0.47 H281DRAFT_00843 lipoprotein NlpD
Burkholderia phytofirmans PsJN 0.77 BPHYT_RS06985 fumarate hydratase 0.50 BPHYT_RS09110 peptidase M23
Paraburkholderia graminis OAS925 0.77 ABIE53_001662 fumarate hydratase class I 0.49 ABIE53_002056 lipoprotein NlpD low > 113
Ralstonia sp. UNC404CL21Col 0.77 ABZR87_RS14375 fumarate hydratase 0.41 ABZR87_RS10870 peptidoglycan DD-metalloendopeptidase family protein low > 80
Ralstonia solanacearum GMI1000 0.77 RS_RS09830 fumarate hydratase 0.41 RS_RS06040 LysM peptidoglycan-binding domain-containing protein low > 80
Ralstonia solanacearum IBSBF1503 0.76 RALBFv3_RS02460 fumarate hydratase 0.42 RALBFv3_RS15230 hypothetical protein low > 76
Ralstonia solanacearum UW163 0.76 UW163_RS11265 fumarate hydratase 0.42 UW163_RS12695 hypothetical protein
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS23780 fumarate hydratase 0.47 QEN71_RS22245 peptidoglycan DD-metalloendopeptidase family protein
Lysobacter sp. OAE881 0.73 ABIE51_RS12620 fumarate hydratase 0.29 ABIE51_RS06500 peptidoglycan DD-metalloendopeptidase family protein low > 62
Castellaniella sp019104865 MT123 0.73 ABCV34_RS09450 fumarate hydratase 0.34 ABCV34_RS03040 peptidoglycan DD-metalloendopeptidase family protein
Dechlorosoma suillum PS 0.72 Dsui_2001 hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily 0.46 Dsui_1970 metalloendopeptidase-like membrane protein
Xanthomonas campestris pv. campestris strain 8004 0.72 Xcc-8004.3506.1 Fumarate hydratase class I, aerobic (EC 4.2.1.2) 0.32 Xcc-8004.3127.1 Lipoprotein NlpD
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS24270 fumarate hydratase 0.34 PFLU_RS06425 peptidoglycan DD-metalloendopeptidase family protein
Pseudomonas syringae pv. syringae B728a 0.71 Psyr_4031 fumarase 0.35 Psyr_1373 Peptidoglycan-binding LysM:Peptidase M23B
Pseudomonas fluorescens SBW25 0.71 PFLU_RS24270 fumarate hydratase 0.34 PFLU_RS06425 peptidoglycan DD-metalloendopeptidase family protein
Pseudomonas syringae pv. syringae B728a ΔmexB 0.71 Psyr_4031 fumarase 0.35 Psyr_1373 Peptidoglycan-binding LysM:Peptidase M23B
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_03795 fumarate hydratase 0.38 AO353_16610 peptigoglycan-binding protein LysM
Pseudomonas sp. RS175 0.71 PFR28_03458 Fumarate hydratase class I, aerobic 0.34 PFR28_00426 hypothetical protein
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_17810 fumarate hydratase 0.33 AO356_05890 peptigoglycan-binding protein LysM
Pseudomonas stutzeri RCH2 0.71 Psest_3193 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region 0.33 Psest_2807 Membrane proteins related to metalloendopeptidases
Pseudomonas putida KT2440 0.71 PP_0897 Fumarate hydratase, class I 0.36 PP_1622 metallopeptidase, M23B subfamily
Pseudomonas sp. S08-1 0.70 OH686_18780 Fumarate hydratase class I, aerobic 0.34 OH686_18180 Murein hydrolase activator NlpD
Acinetobacter radioresistens SK82 0.68 MPMX26_00411 Fumarate hydratase class I, aerobic 0.27 MPMX26_01055 Murein hydrolase activator NlpD low > 36
Shewanella loihica PV-4 0.67 Shew_1904 tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit (RefSeq) 0.29 Shew_1212 peptidase M23B (RefSeq)
Kangiella aquimarina DSM 16071 0.67 B158DRAFT_1342 fumarase, class I, homodimeric (EC 4.2.1.2) 0.34 B158DRAFT_2299 Membrane proteins related to metalloendopeptidases
Shewanella amazonensis SB2B 0.66 Sama_1688 fumarate hydratase, class I, anaerobic, putative (RefSeq) 0.29 Sama_1043 lipoprotein NlpD (RefSeq)
Shewanella oneidensis MR-1 0.66 SO2222 fumarate hydratase, class I, anaerobic, putative (NCBI ptt file) 0.29 SO3433 nlpD lipoprotein NlpD (NCBI ptt file)
Alteromonas macleodii MIT1002 0.65 MIT1002_02009 Fumarate hydratase class I, anaerobic 0.33 MIT1002_00626 Murein hydrolase activator NlpD precursor
Shewanella sp. ANA-3 0.65 Shewana3_2302 fumarase (RefSeq) 0.30 Shewana3_1123 peptidase M23B (RefSeq)
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_06585 fumarate hydratase 0.29 CSW01_02830 murein hydrolase activator NlpD low > 62
Klebsiella michiganensis M5al 0.19 BWI76_RS08450 fumarate hydratase 0.32 BWI76_RS22650 lipoprotein NlpD low > 92

Not shown: 47 genomes with orthologs for GFF4099 only; 0 genomes with orthologs for GFF3881 only