| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 1.0 | GFF795 | | TRAP-type C4-dicarboxylate transport system, large permease component | 1.0 | GFF3854 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | 0.67 | 2 |
| Variovorax sp. OAS795 | 0.86 | ABID97_RS10330 | | TRAP transporter large permease | 0.49 | ABID97_RS10675 | | SurA N-terminal domain-containing protein | low | > 91 |
| Azospirillum sp. SherDot2 | 0.70 | MPMX19_05803 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.08 | MPMX19_00894 | | Peptidyl-prolyl cis-trans isomerase D | — | — |
| Azospirillum brasilense Sp245 | 0.69 | AZOBR_RS30120 | | C4-dicarboxylate ABC transporter permease | 0.09 | AZOBR_RS07495 | | peptidylprolyl isomerase | low | > 97 |
| Burkholderia phytofirmans PsJN | 0.54 | BPHYT_RS24185 | | C4-dicarboxylate ABC transporter permease | 0.34 | BPHYT_RS09480 | | peptidyl-prolyl cis-trans isomerase | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.54 | H281DRAFT_05326 | | TRAP transporter, DctM subunit | 0.34 | H281DRAFT_00902 | | peptidyl-prolyl cis-trans isomerase D | low | > 103 |
| Ralstonia sp. UNC404CL21Col | 0.54 | ABZR87_RS21100 | | TRAP transporter large permease | 0.37 | ABZR87_RS12765 | | SurA N-terminal domain-containing protein | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.54 | ABIE53_006500 | | tripartite ATP-independent transporter DctM subunit | 0.33 | ABIE53_002134 | | peptidyl-prolyl cis-trans isomerase D | low | > 113 |
| Variovorax sp. SCN45 | 0.53 | GFF2920 | | TRAP-type C4-dicarboxylate transport system, large permease component | 0.47 | GFF2852 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | low | > 127 |
| Caulobacter crescentus NA1000 | 0.49 | CCNA_01515 | | C4-dicarboxylate transporter large subunit | 0.10 | CCNA_01971 | | peptidyl-prolyl cis-trans isomerase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.49 | CCNA_01515 | | C4-dicarboxylate transporter large subunit | 0.10 | CCNA_01971 | | peptidyl-prolyl cis-trans isomerase | low | > 67 |
| Enterobacter sp. TBS_079 | 0.45 | MPMX20_04347 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.13 | MPMX20_01032 | | Peptidyl-prolyl cis-trans isomerase D | low | > 85 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.44 | Xcc-8004.203.1 | | TRAP-type C4-dicarboxylate transport system, large permease component | 0.15 | Xcc-8004.4039.1 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.43 | HER17_RS19685 | | TRAP transporter large permease | 0.13 | HER17_RS15830 | | peptidylprolyl isomerase | low | > 75 |
| Pseudomonas fluorescens FW300-N2C3 | 0.42 | AO356_23045 | | hypothetical protein | 0.16 | AO356_01725 | | peptidylprolyl isomerase | — | — |
| Rahnella sp. WP5 | 0.42 | EX31_RS08020 | | TRAP transporter large permease | 0.13 | EX31_RS22265 | | peptidylprolyl isomerase | low | > 89 |
| Lysobacter sp. OAE881 | 0.42 | ABIE51_RS02840 | | TRAP transporter large permease | 0.16 | ABIE51_RS14120 | | peptidyl-prolyl cis-trans isomerase | low | > 62 |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS19305 | | TRAP transporter large permease | 0.16 | PFLU_RS19150 | | peptidyl-prolyl cis-trans isomerase | — | — |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS19305 | | TRAP transporter large permease | 0.16 | PFLU_RS19150 | | peptidyl-prolyl cis-trans isomerase | — | — |
| Pseudomonas simiae WCS417 | 0.41 | PS417_17380 | | membrane protein | 0.15 | PS417_17215 | | peptidylprolyl isomerase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.41 | Pf6N2E2_485 | | TRAP-type C4-dicarboxylate transport system, large permease component | 0.16 | Pf6N2E2_2214 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | — | — |
| Acidovorax sp. GW101-3H11 | 0.41 | Ac3H11_3955 | | TRAP-type C4-dicarboxylate transport system, large permease component | 0.53 | Ac3H11_377 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | — | — |
| Pseudomonas sp. RS175 | 0.41 | PFR28_02440 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.17 | PFR28_01231 | | Peptidyl-prolyl cis-trans isomerase D | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.41 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | 0.16 | Psyr_1751 | | PpiC-type peptidyl-prolyl cis-trans isomerase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.41 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | 0.16 | Psyr_1751 | | PpiC-type peptidyl-prolyl cis-trans isomerase | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_0361 | | TRAP transporter, DctM subunit | 0.16 | Psest_2283 | | Parvulin-like peptidyl-prolyl isomerase | — | — |
| Pantoea sp. MT58 | 0.41 | IAI47_03220 | | TRAP transporter large permease | 0.13 | IAI47_14635 | | peptidylprolyl isomerase | low | > 76 |
| Pseudomonas putida KT2440 | 0.40 | PP_1167 | | D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) | 0.15 | PP_2304 | | putative Peptidyl-prolyl cis-trans isomerase D | low | > 96 |
| Klebsiella michiganensis M5al | 0.36 | BWI76_RS24135 | | c4-dicarboxylate permease | 0.12 | BWI76_RS06545 | | peptidylprolyl isomerase | low | > 92 |
| Escherichia coli ECOR27 | 0.36 | NOLOHH_11090 | dctQ | Tripartite ATP-independent periplasmic transporter, DctM component | 0.12 | NOLOHH_01245 | ppiD | peptidylprolyl isomerase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.33 | OHPLBJKB_03837 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.12 | OHPLBJKB_03232 | | Peptidyl-prolyl cis-trans isomerase D | low | > 73 |
| Escherichia coli Nissle 1917 | 0.33 | ECOLIN_RS17390 | | TRAP transporter large permease subunit | 0.12 | ECOLIN_RS02645 | | peptidylprolyl isomerase | low | > 52 |
| Escherichia coli ECRC62 | 0.33 | BNILDI_07135 | | TRAP transporter large permease | 0.12 | BNILDI_22660 | ppiD | peptidylprolyl isomerase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.33 | GFF2273 | | Predicted rhamnogalacturonide-specific TRAP-type transporter, large transmembrane component RhiC | 0.12 | GFF4357 | | Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) | low | > 78 |
| Dinoroseobacter shibae DFL-12 | 0.32 | Dshi_0956 | | TRAP dicarboxylate transporter, DctM subunit (RefSeq) | 0.09 | Dshi_1795 | | putative peptidyl-prolyl cis-trans isomerse D (RefSeq) | — | — |
| Castellaniella sp019104865 MT123 | 0.31 | ABCV34_RS12260 | | TRAP transporter large permease | 0.24 | ABCV34_RS03085 | | SurA N-terminal domain-containing protein | — | — |
| Escherichia coli ECOR38 | 0.29 | HEPCGN_01270 | | C4-dicarboxylate ABC transporter | 0.12 | HEPCGN_06925 | ppiD | peptidylprolyl isomerase | low | > 85 |
| Shewanella sp. ANA-3 | 0.27 | Shewana3_1414 | | TRAP dicarboxylate transporter, DctM subunit (RefSeq) | 0.18 | Shewana3_2657 | | PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.25 | Shew_1444 | | dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) | 0.17 | Shew_2504 | | PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.24 | Sama_2211 | | alpha-ketoglutarate TRAP transporter, large permease component (from data) | 0.17 | Sama_1228 | | peptidyl-prolyl cis-trans isomerase D (RefSeq) | low | > 62 |
Not shown: 7 genomes with orthologs for GFF795 only; 37 genomes with orthologs for GFF3854 only