Conservation of cofitness between GFF4838 and GFF3567 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 1.0 GFF3567 Pyruvate kinase (EC 2.7.1.40) 0.61 4
Escherichia coli HS(pFamp)R (ATCC 700891) 0.86 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.96 OHPLBJKB_02048 Pyruvate kinase I low > 73
Escherichia coli BW25113 0.86 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 0.96 b1676 pykF pyruvate kinase (NCBI) low > 76
Escherichia coli ECRC62 0.86 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.96 BNILDI_16600 pykF pyruvate kinase PykF low > 75
Escherichia coli ECOR38 0.86 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.96 HEPCGN_05675 pykF pyruvate kinase PykF — —
Escherichia coli BL21 0.86 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.96 ECD_01645 pyruvate kinase I low > 61
Escherichia coli ECOR27 0.86 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.96 NOLOHH_17810 pykF pyruvate kinase PykF low > 75
Escherichia coli Nissle 1917 0.86 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.96 ECOLIN_RS09375 pyruvate kinase PykF low > 55
Escherichia coli ECRC98 0.85 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.96 JDDGAC_01865 pykF pyruvate kinase PykF — —
Escherichia coli ECRC100 0.85 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.96 OKFHMN_27290 pykF pyruvate kinase PykF — —
Escherichia coli ECRC102 0.85 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.96 NIAGMN_00775 pykF pyruvate kinase PykF — —
Escherichia coli ECRC101 0.85 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.96 MCAODC_18120 pykF pyruvate kinase PykF — —
Escherichia coli ECRC99 0.85 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.96 KEDOAH_00820 pykF pyruvate kinase PykF — —
Escherichia fergusonii Becca 0.85 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.96 EFB2_02316 Pyruvate kinase I low > 86
Enterobacter asburiae PDN3 0.78 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.97 EX28DRAFT_1679 pyruvate kinase low > 76
Enterobacter sp. TBS_079 0.78 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.97 MPMX20_01951 Pyruvate kinase I low > 85
Klebsiella michiganensis M5al 0.77 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.96 BWI76_RS16960 pyruvate kinase — —
Pectobacterium carotovorum WPP14 0.63 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.86 HER17_RS08960 pyruvate kinase PykF low > 75
Dickeya dadantii 3937 0.63 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.87 DDA3937_RS12740 pyruvate kinase PykF low > 74
Rahnella sp. WP5 0.63 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.89 EX31_RS13870 pyruvate kinase PykF low > 89
Dickeya dianthicola 67-19 0.63 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.86 HGI48_RS12805 pyruvate kinase PykF low > 71
Serratia liquefaciens MT49 0.62 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.89 IAI46_11185 pyruvate kinase PykF 0.54 32
Dickeya dianthicola ME23 0.62 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.86 DZA65_RS13270 pyruvate kinase PykF low > 75
Pantoea sp. MT58 0.62 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.88 IAI47_10840 pyruvate kinase PykF low > 76
Erwinia tracheiphila SCR3 0.58 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.87 LU632_RS11145 pykF pyruvate kinase PykF low > 74
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.77 CSW01_02575 pyruvate kinase PykF — —
Castellaniella sp019104865 MT123 0.34 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.32 ABCV34_RS12115 pyruvate kinase low > 48
Pseudomonas simiae WCS417 0.34 PS417_20155 23S rRNA methyltransferase 0.31 PS417_08790 pyruvate kinase low > 88
Pseudomonas fluorescens SBW25 0.33 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.31 PFLU_RS08850 pyruvate kinase low > 109
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.31 PFLU_RS08850 pyruvate kinase low > 109
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.31 Pf1N1B4_3657 Pyruvate kinase (EC 2.7.1.40) low > 87
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_19055 23S rRNA methyltransferase 0.31 AO356_19600 pyruvate kinase low > 104
Pseudomonas sp. RS175 0.33 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.31 PFR28_03114 Pyruvate kinase low > 88
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.30 Pf6N2E2_5835 Pyruvate kinase (EC 2.7.1.40) low > 103
Pseudomonas putida KT2440 0.31 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.32 PP_4301 Pyruvate kinase low > 96
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.31 PfGW456L13_4299 Pyruvate kinase (EC 2.7.1.40) low > 87
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_02715 23S rRNA methyltransferase 0.31 AO353_01940 pyruvate kinase low > 101
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS13170 23S rRNA methyltransferase 0.33 RR42_RS19870 pyruvate kinase low > 128
Ralstonia solanacearum IBSBF1503 0.29 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.32 RALBFv3_RS17015 pyruvate kinase low > 76
Mucilaginibacter yixingensis YX-36 DSM 26809 0.18 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.33 ABZR88_RS01590 pyruvate kinase — —
Desulfovibrio vulgaris Miyazaki F 0.18 DvMF_1383 RNA methyltransferase, TrmA family (RefSeq) 0.28 DvMF_0965 pyruvate kinase (RefSeq) low > 51
Pontibacter actiniarum KMM 6156, DSM 19842 0.18 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA 0.31 CA264_00725 pyruvate kinase low > 74
Phocaeicola vulgatus CL09T03C04 0.17 HMPREF1058_RS03720 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 HMPREF1058_RS09670 pyruvate kinase — —
Phocaeicola dorei CL03T12C01 0.17 ABI39_RS17490 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 ABI39_RS07010 pyruvate kinase low > 72
Parabacteroides merdae CL09T00C40 0.17 HMPREF1078_RS02375 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 HMPREF1078_RS04695 pyruvate kinase low > 61
Bacteroides ovatus ATCC 8483 0.17 BACOVA_02267 23S rRNA (uracil-5-)-methyltransferase RumA 0.36 BACOVA_02121 pyruvate kinase — —
Pedobacter sp. GW460-11-11-14-LB5 0.17 CA265_RS25340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.33 CA265_RS18740 pyruvate kinase — —
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS16525 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.35 HMPREF1181_RS01240 pyruvate kinase low > 56
Desulfovibrio vulgaris Hildenborough JW710 0.17 DVU0924 rumA 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) 0.27 DVU2514 pyk pyruvate kinase (TIGR) low > 55
Bacteroides thetaiotaomicron VPI-5482 0.17 BT0643 RNA methyltransferase (NCBI ptt file) 0.35 BT2841 pyruvate kinase (NCBI ptt file) low > 81
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_0172 23S rRNA (uracil-5-)-methyltransferase RumA 0.35 Echvi_2317 pyruvate kinase low > 79
Fusobacterium nucleatum SB010 0.16 HUW76_01255 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.62 HUW76_00910 pyruvate kinase PykF — —
Caulobacter crescentus NA1000 Δfur 0.16 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.28 CCNA_02130 pyruvate kinase low > 67
Caulobacter crescentus NA1000 0.16 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.28 CCNA_02130 pyruvate kinase low > 66
Azospirillum brasilense Sp245 0.15 AZOBR_RS01195 RNA methyltransferase 0.31 AZOBR_RS06845 pyruvate kinase low > 97
Bosea sp. OAE506 0.15 ABIE41_RS22255 RNA methyltransferase 0.31 ABIE41_RS06285 pyruvate kinase low > 77
Azospirillum sp. SherDot2 0.14 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.33 MPMX19_04074 Pyruvate kinase low > 112
Sphingomonas koreensis DSMZ 15582 0.13 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 0.30 Ga0059261_0685 pyruvate kinase low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.13 A4249_RS08425 class I SAM-dependent RNA methyltransferase 0.26 A4249_RS02440 pyruvate kinase — —
Rhodospirillum rubrum S1H 0.12 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) 0.32 Rru_A2465 Pyruvate kinase (NCBI) — —

Not shown: 38 genomes with orthologs for GFF4838 only; 4 genomes with orthologs for GFF3567 only