| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Marinobacter adhaerens HP15 | 1.0 | HP15_2180 | | transcriptional regulator, RpiR family protein | 1.0 | HP15_203 | | oligopeptide/dipeptide ABC transporter, ATPase subunit | 0.41 | 16 |
| Pseudomonas sp. RS175 | 0.60 | PFR28_00572 | | HTH-type transcriptional regulator HexR | 0.42 | PFR28_00125 | | Dipeptide transport ATP-binding protein DppD | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.60 | PfGW456L13_1900 | | Phosphogluconate repressor HexR, RpiR family | 0.43 | PfGW456L13_5057 | | Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) | low | > 87 |
| Pseudomonas putida KT2440 | 0.60 | PP_1021 | | DNA-binding transcriptional regulator | 0.42 | PP_0879 | | dipeptide ABC transporter - putative ATP binding subunit | low | > 96 |
| Pseudomonas fluorescens FW300-N2C3 | 0.60 | AO356_05165 | | transcriptional regulator | 0.43 | AO356_07270 | | peptide ABC transporter ATP-binding protein | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.60 | Pf6N2E2_2886 | | Phosphogluconate repressor HexR, RpiR family | 0.42 | Pf6N2E2_3313 | | Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.60 | Pf1N1B4_590 | | Phosphogluconate repressor HexR, RpiR family | 0.43 | Pf1N1B4_1126 | | Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.59 | PFLU_RS23730 | | MurR/RpiR family transcriptional regulator | 0.43 | PFLU_RS04090 | | ABC transporter ATP-binding protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.59 | PFLU_RS23730 | | MurR/RpiR family transcriptional regulator | 0.43 | PFLU_RS04090 | | ABC transporter ATP-binding protein | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.59 | Psyr_1119 | | Helix-turn-helix protein RpiR:Sugar isomerase (SIS) | 0.50 | Psyr_2540 | | Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.59 | Psyr_1119 | | Helix-turn-helix protein RpiR:Sugar isomerase (SIS) | 0.50 | Psyr_2540 | | Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal | low | > 86 |
| Pseudomonas simiae WCS417 | 0.59 | PS417_22115 | | transcriptional regulator | 0.43 | PS417_04050 | | peptide ABC transporter ATP-binding protein | low | > 88 |
| Pseudomonas sp. S08-1 | 0.59 | OH686_02440 | | Phosphogluconate repressor HexR, RpiR family | 0.41 | OH686_08715 | | Dipeptide ABC transporter, ATP-binding protein DppD | 0.68 | 52 |
| Pseudomonas fluorescens FW300-N2E3 | 0.59 | AO353_03365 | | transcriptional regulator | 0.43 | AO353_05405 | | peptide ABC transporter ATP-binding protein | low | > 101 |
| Serratia liquefaciens MT49 | 0.56 | IAI46_14580 | | MurR/RpiR family transcriptional regulator | 0.46 | IAI46_14190 | | ABC transporter ATP-binding protein | low | > 86 |
| Rahnella sp. WP5 | 0.55 | EX31_RS10635 | | MurR/RpiR family transcriptional regulator | 0.45 | EX31_RS10050 | | ABC transporter ATP-binding protein | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.55 | HER17_RS11785 | | MurR/RpiR family transcriptional regulator | 0.46 | HER17_RS11005 | | ABC transporter ATP-binding protein | low | > 75 |
| Dickeya dianthicola ME23 | 0.55 | DZA65_RS10575 | | MurR/RpiR family transcriptional regulator | 0.48 | DZA65_RS10875 | | ABC transporter ATP-binding protein | low | > 75 |
| Dickeya dianthicola 67-19 | 0.55 | HGI48_RS10160 | | MurR/RpiR family transcriptional regulator | 0.48 | HGI48_RS10395 | | ABC transporter ATP-binding protein | low | > 71 |
| Dickeya dadantii 3937 | 0.54 | DDA3937_RS10130 | | MurR/RpiR family transcriptional regulator | 0.48 | DDA3937_RS10390 | | ABC transporter ATP-binding protein | 0.74 | 4 |
| Escherichia coli ECRC101 | 0.54 | MCAODC_19080 | hexR | DNA-binding transcriptional regulator HexR | 0.47 | MCAODC_21615 | oppD | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD | — | — |
| Escherichia coli ECRC102 | 0.54 | NIAGMN_01735 | hexR | DNA-binding transcriptional regulator HexR | 0.47 | NIAGMN_27590 | oppD | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD | — | — |
| Escherichia coli ECOR27 | 0.54 | NOLOHH_16840 | hexR | DNA-binding transcriptional regulator HexR | 0.46 | NOLOHH_20405 | oppD | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD | — | — |
| Escherichia coli ECRC99 | 0.54 | KEDOAH_01780 | hexR | DNA-binding transcriptional regulator HexR | 0.47 | KEDOAH_25640 | oppD | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD | — | — |
| Escherichia coli ECRC101 | 0.54 | OKFHMN_26325 | hexR | DNA-binding transcriptional regulator HexR | 0.47 | OKFHMN_28645 | oppD | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD | — | — |
| Escherichia coli ECRC62 | 0.54 | BNILDI_15635 | hexR | DNA-binding transcriptional regulator HexR | 0.46 | BNILDI_18550 | oppD | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD | — | — |
| Escherichia coli ECOR38 | 0.54 | HEPCGN_04730 | hexR | DNA-binding transcriptional regulator HexR | 0.47 | HEPCGN_25110 | oppD | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD | low | > 85 |
| Escherichia coli ECRC98 | 0.54 | JDDGAC_00900 | hexR | DNA-binding transcriptional regulator HexR | 0.47 | JDDGAC_05930 | oppD | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD | — | — |
| Klebsiella michiganensis M5al | 0.54 | BWI76_RS18110 | | transcriptional regulator HexR | 0.46 | BWI76_RS17225 | | oligopeptide ABC transporter ATP-binding protein OppD | low | > 92 |
| Escherichia fergusonii Becca | 0.54 | EFB2_02089 | | HTH-type transcriptional regulator HexR | 0.47 | EFB2_02679 | | Oligopeptide transport ATP-binding protein OppD | low | > 86 |
| Escherichia coli BL21 | 0.54 | ECD_01824 | | putative DNA-binding transcriptional regulator | 0.46 | ECD_01220 | | oligopeptide ABC transporter ATPase | low | > 60 |
| Escherichia coli BW25113 | 0.54 | b1853 | yebK | predicted DNA-binding transcriptional regulator (NCBI) | 0.46 | b1246 | oppD | oligopeptide transporter ATP-binding component (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.54 | OHPLBJKB_01875 | | HTH-type transcriptional regulator HexR | 0.46 | OHPLBJKB_02437 | | Oligopeptide transport ATP-binding protein OppD | low | > 73 |
| Escherichia coli Nissle 1917 | 0.54 | ECOLIN_RS10325 | | DNA-binding transcriptional regulator HexR | 0.47 | ECOLIN_RS07525 | | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.54 | CSW01_05825 | | transcriptional regulator HexR | 0.46 | CSW01_05560 | | ABC transporter ATP-binding protein | low | > 62 |
| Enterobacter asburiae PDN3 | 0.53 | EX28DRAFT_0703 | | transcriptional regulator, RpiR family | 0.46 | EX28DRAFT_0871 | | oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.53 | GFF1632 | | Phosphogluconate repressor HexR, RpiR family | 0.46 | GFF2743 | | Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.50 | LU632_RS13365 | | MurR/RpiR family transcriptional regulator | 0.45 | LU632_RS12865 | | ABC transporter ATP-binding protein | low | > 74 |
| Pantoea sp. MT58 | 0.48 | IAI47_08490 | | MurR/RpiR family transcriptional regulator | 0.45 | IAI47_09085 | | ABC transporter ATP-binding protein | low | > 76 |
| Castellaniella sp019104865 MT123 | 0.39 | ABCV34_RS08655 | | SIS domain-containing protein | 0.44 | ABCV34_RS11095 | | ABC transporter ATP-binding protein | low | > 48 |
| Sinorhizobium meliloti 1021 | 0.36 | SMc02460 | | hypothetical protein | 0.49 | SMc02423 | | oligopeptide transport ATP-binding ABC transporter protein | low | > 103 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.35 | H281DRAFT_04279 | | transcriptional regulator, RpiR family | 0.45 | H281DRAFT_03126 | | oligopeptide transport system ATP-binding protein | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.35 | ABIE53_003518 | | RpiR family carbohydrate utilization transcriptional regulator | 0.46 | ABIE53_006350 | | peptide/nickel transport system ATP-binding protein | low | > 113 |
| Cupriavidus basilensis FW507-4G11 | 0.34 | RR42_RS06120 | | transcriptional regulator | 0.49 | RR42_RS10815 | | methionine ABC transporter ATP-binding protein | low | > 128 |
| Burkholderia phytofirmans PsJN | 0.34 | BPHYT_RS16740 | | transcriptional regulator | 0.50 | BPHYT_RS31200 | | peptide ABC transporter substrate-binding protein | low | > 109 |
| Acidovorax sp. GW101-3H11 | 0.34 | Ac3H11_2055 | | Probable transcriptional regulator | 0.49 | Ac3H11_2051 | | Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) | low | > 79 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.34 | GFF1364 | | Phosphogluconate repressor HexR, RpiR family | 0.48 | GFF1366 | | Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) | low | > 90 |
| Herbaspirillum seropedicae SmR1 | 0.34 | HSERO_RS05505 | | transcriptional regulator | 0.48 | HSERO_RS07880 | | peptide ABC transporter substrate-binding protein | low | > 78 |
| Azospirillum sp. SherDot2 | 0.34 | MPMX19_05117 | | HTH-type transcriptional regulator HexR | 0.46 | MPMX19_04016 | | Oligopeptide transport ATP-binding protein OppD | low | > 112 |
| Azospirillum brasilense Sp245 | 0.33 | AZOBR_RS30190 | | transcriptional regulator | 0.50 | AZOBR_RS31020 | | methionine ABC transporter ATP-binding protein | low | > 97 |
| Paraburkholderia sabiae LMG 24235 | 0.33 | QEN71_RS26925 | | MurR/RpiR family transcriptional regulator | 0.46 | QEN71_RS18345 | | ABC transporter ATP-binding protein | low | > 153 |
| Ralstonia sp. UNC404CL21Col | 0.23 | ABZR87_RS19110 | | MurR/RpiR family transcriptional regulator | 0.49 | ABZR87_RS14290 | | ABC transporter ATP-binding protein | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.23 | RS_RS22855 | | MurR/RpiR family transcriptional regulator | 0.49 | RS_RS09515 | | ABC transporter ATP-binding protein | low | > 80 |
| Ralstonia solanacearum UW163 | 0.23 | UW163_RS20950 | | MurR/RpiR family transcriptional regulator | 0.49 | UW163_RS11365 | | ABC transporter ATP-binding protein | — | — |
| Agrobacterium fabrum C58 | 0.23 | Atu2598 | | transcriptional regulator, RpiR family | 0.52 | Atu5256 | | ABC transporter nucleotide binding/ATPase (oligopeptide) | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.23 | RALBFv3_RS18180 | | MurR/RpiR family transcriptional regulator | 0.49 | RALBFv3_RS02360 | | ABC transporter ATP-binding protein | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.23 | RPSI07_RS05455 | | MurR/RpiR family transcriptional regulator | 0.49 | RPSI07_RS10850 | | ABC transporter ATP-binding protein | low | > 81 |
| Variovorax sp. OAS795 | 0.21 | ABID97_RS22860 | | MurR/RpiR family transcriptional regulator | 0.48 | ABID97_RS07050 | | ABC transporter ATP-binding protein | low | > 91 |
Not shown: 14 genomes with orthologs for HP15_2180 only; 7 genomes with orthologs for HP15_203 only