| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Sphingobium sp. HT1-2 | 1.0 | GFF3721 | | Flagellar biosynthesis protein FlhA | 1.0 | GFF1524 | | Transcriptional regulator, AcrR family | 0.66 | 16 |
| Alteromonas macleodii MIT1002 | 0.44 | MIT1002_01100 | | Flagellar biosynthesis protein FlhA | 0.12 | MIT1002_03469 | | Rut operon repressor | low | > 70 |
| Pseudomonas sp. RS175 | 0.44 | PFR28_00849 | | Flagellar biosynthesis protein FlhA | 0.38 | PFR28_03812 | | HTH-type transcriptional repressor NicS | 0.30 | 70 |
| Pseudomonas fluorescens FW300-N2E2 | 0.43 | Pf6N2E2_2576 | | Flagellar biosynthesis protein FlhA | 0.37 | Pf6N2E2_5059 | | Transcriptional regulator, TetR family | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.43 | AO356_03745 | | flagellar biosynthesis protein FlhA | 0.39 | AO356_15585 | | TetR family transcriptional regulator | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.43 | AO353_18770 | | flagellar biosynthesis protein FlhA | 0.40 | AO353_06180 | | TetR family transcriptional regulator | low | > 101 |
| Pseudomonas putida KT2440 | 0.43 | PP_4344 | | flagellar export pore protein | 0.40 | PP_3527 | | Transcriptional regulator, TetR family | low | > 96 |
| Escherichia coli BW25113 | 0.43 | b1879 | flhA | flagellar biosynthesis protein A (NCBI) | 0.15 | b1013 | ycdC | predicted DNA-binding transcriptional regulator (NCBI) | low | > 76 |
| Pseudomonas sp. SVBP6 | 0.42 | COO64_RS25610 | flhA | flagellar biosynthesis protein FlhA | 0.40 | COO64_RS02845 | | TetR/AcrR family transcriptional regulator | low | > 93 |
| Pseudomonas fluorescens FW300-N1B4 | 0.42 | Pf1N1B4_3622 | | Flagellar biosynthesis protein FlhA | 0.39 | Pf1N1B4_2748 | | Transcriptional regulator, TetR family | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.42 | Psyr_3440 | | Flagellar biosynthesis protein FlhA | 0.40 | Psyr_2131 | | transcriptional regulator, TetR family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.42 | Psyr_3440 | | Flagellar biosynthesis protein FlhA | 0.40 | Psyr_2131 | | transcriptional regulator, TetR family | low | > 86 |
| Pseudomonas sp. DMC3 | 0.42 | GFF2469 | | Flagellar biosynthesis protein FlhA | 0.39 | GFF3935 | | HTH-type transcriptional repressor NicS | low | > 89 |
| Pseudomonas fluorescens SBW25 | 0.42 | PFLU_RS21675 | | flagellar biosynthesis protein FlhA | 0.37 | PFLU_RS26365 | | TetR/AcrR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.42 | PFLU_RS21675 | | flagellar biosynthesis protein FlhA | 0.37 | PFLU_RS26365 | | TetR/AcrR family transcriptional regulator | low | > 109 |
| Pseudomonas stutzeri RCH2 | 0.42 | Psest_1737 | | flagellar biosynthesis protein FlhA | 0.14 | Psest_1190 | | Transcriptional regulator | low | > 67 |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_4334 | | Flagellar biosynthesis protein FlhA | 0.38 | PfGW456L13_1426 | | Transcriptional regulator, TetR family | low | > 87 |
| Pseudomonas aeruginosa MRSN321 | 0.42 | DY961_RS05650 | flhA;go_component=bacterial-type | flagellar biosynthesis protein FlhA | 0.42 | DY961_RS27485 | | TetR/AcrR family transcriptional regulator | low | > 100 |
| Pseudomonas aeruginosa PA14 | 0.42 | IKLFDK_06905 | | flagellar biosynthesis protein FlhA | 0.42 | IKLFDK_24365 | | TetR family transcriptional regulator | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.42 | DQ20_RS47140 | flhA;go_component=bacterial-type | flagellar biosynthesis protein FlhA | 0.42 | DQ20_RS32035 | | TetR/AcrR family transcriptional regulator | low | > 101 |
| Ralstonia solanacearum GMI1000 | 0.42 | RS_RS23845 | | flagellar biosynthesis protein FlhA | 0.41 | RS_RS23855 | | TetR/AcrR family transcriptional regulator | low | > 80 |
| Pseudomonas orientalis W4I3 | 0.42 | QF045_RS21850 | | flagellar biosynthesis protein FlhA | 0.37 | QF045_RS26705 | | TetR/AcrR family transcriptional regulator | low | > 93 |
| Ralstonia solanacearum IBSBF1503 | 0.42 | RALBFv3_RS17470 | | flagellar biosynthesis protein FlhA | 0.42 | RALBFv3_RS17460 | | TetR/AcrR family transcriptional regulator | low | > 76 |
| Pseudomonas sp. BP01 | 0.42 | JOY50_RS00600 | flhA | flagellar biosynthesis protein FlhA | 0.40 | JOY50_RS27395 | | TetR/AcrR family transcriptional regulator | low | > 84 |
| Ralstonia solanacearum UW163 | 0.42 | UW163_RS21680 | | flagellar biosynthesis protein FlhA | 0.42 | UW163_RS21690 | | TetR/AcrR family transcriptional regulator | — | — |
| Ralstonia solanacearum PSI07 | 0.42 | RPSI07_RS06180 | | flagellar biosynthesis protein FlhA | 0.43 | RPSI07_RS06190 | | TetR/AcrR family transcriptional regulator | low | > 81 |
| Paraburkholderia sabiae LMG 24235 | 0.42 | QEN71_RS28955 | | flagellar biosynthesis protein FlhA | 0.41 | QEN71_RS13120 | | TetR family transcriptional regulator | low | > 153 |
| Pseudomonas simiae WCS417 | 0.42 | PS417_19710 | | flagellar biosynthesis protein FlhA | 0.38 | PS417_24440 | | TetR family transcriptional regulator | low | > 88 |
| Marinobacter adhaerens HP15 | 0.42 | HP15_2305 | | flagellar biosynthesis protein A | 0.20 | HP15_14 | | transcriptional regulator, TetR family | low | > 73 |
| Escherichia coli ECRC102 | 0.42 | NIAGMN_01890 | flhA | flagellar biosynthesis protein FlhA | 0.15 | NIAGMN_23725 | rutR | HTH-type transcriptional regulator RutR | — | — |
| Escherichia coli ECRC99 | 0.42 | KEDOAH_01935 | flhA | flagellar biosynthesis protein FlhA | 0.15 | KEDOAH_23135 | rutR | HTH-type transcriptional regulator RutR | — | — |
| Escherichia coli ECRC98 | 0.42 | JDDGAC_00745 | flhA | flagellar biosynthesis protein FlhA | 0.15 | JDDGAC_08220 | rutR | HTH-type transcriptional regulator RutR | low | > 87 |
| Escherichia coli ECRC101 | 0.42 | MCAODC_19235 | flhA | flagellar biosynthesis protein FlhA | 0.15 | MCAODC_23995 | rutR | HTH-type transcriptional regulator RutR | low | > 87 |
| Escherichia coli ECRC100 | 0.42 | OKFHMN_26170 | flhA | flagellar biosynthesis protein FlhA | 0.15 | OKFHMN_04610 | rutR | HTH-type transcriptional regulator RutR | low | > 79 |
| Cupriavidus basilensis FW507-4G11 | 0.42 | RR42_RS35765 | | flagellar biosynthesis protein FlhA | 0.33 | RR42_RS05980 | | TetR family transcriptional regulator | low | > 128 |
| Pseudomonas lactucae CFBP13502 | 0.41 | GEMAOFIL_04141 | | Flagellar biosynthesis protein FlhA | 0.36 | GEMAOFIL_05034 | | HTH-type transcriptional repressor NicS | low | > 96 |
| Pseudomonas segetis P6 | 0.41 | MPMX49_03130 | | Flagellar biosynthesis protein FlhA | 0.40 | MPMX49_02711 | | HTH-type transcriptional repressor NicS | low | > 75 |
| Escherichia coli BL21 | 0.41 | ECD_01850 | | putative flagellar export pore protein | 0.15 | ECD_01016 | | rut operon transcriptional repressor for | — | — |
| Escherichia coli Nissle 1917 | 0.41 | ECOLIN_RS10735 | | flagellar biosynthesis protein FlhA | 0.31 | ECOLIN_RS24435 | | TetR/AcrR family transcriptional regulator | — | — |
| Escherichia coli ECRC62 | 0.41 | BNILDI_15400 | flhA | flagellar biosynthesis protein FlhA | 0.30 | BNILDI_07175 | | TetR/AcrR family transcriptional regulator | low | > 75 |
| Escherichia coli ECOR27 | 0.41 | NOLOHH_16610 | flhA | flagellar biosynthesis protein FlhA | 0.15 | NOLOHH_21510 | rutR | HTH-type transcriptional regulator RutR | low | > 76 |
| Escherichia coli ECOR38 | 0.41 | HEPCGN_04590 | flhA | flagellar biosynthesis protein FlhA | 0.31 | HEPCGN_10290 | acrR | TetR/AcrR family transcriptional regulator | low | > 88 |
| Escherichia fergusonii Becca | 0.41 | EFB2_02064 | | Flagellar biosynthesis protein FlhA | 0.31 | EFB2_04323 | | HTH-type transcriptional repressor NicS | low | > 86 |
| Variovorax sp. SCN45 | 0.41 | GFF5771 | | Flagellar biosynthesis protein FlhA | 0.34 | GFF4821 | | Transcriptional regulator, AcrR family | 0.49 | 25 |
| Serratia liquefaciens MT49 | 0.41 | IAI46_15995 | | flagellar biosynthesis protein FlhA | 0.29 | IAI46_12895 | | TetR family transcriptional regulator | low | > 87 |
| Paraburkholderia graminis OAS925 | 0.41 | ABIE53_000113 | | flagellar biosynthesis protein FlhA | 0.41 | ABIE53_004073 | | AcrR family transcriptional regulator | low | > 113 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.41 | OHPLBJKB_01849 | | Flagellar biosynthesis protein FlhA | 0.30 | OHPLBJKB_03830 | | HTH-type transcriptional repressor NicS | low | > 74 |
| Burkholderia phytofirmans PsJN | 0.41 | BPHYT_RS18940 | | flagellar biosynthesis protein FlhA | 0.41 | BPHYT_RS22695 | | TetR family transcriptional regulator | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.41 | H281DRAFT_05753 | | flagellar biosynthesis protein FlhA | 0.41 | H281DRAFT_03218 | | transcriptional regulator, TetR family | low | > 103 |
| Castellaniella sp019104865 MT123 | 0.41 | ABCV34_RS05795 | | flagellar biosynthesis protein FlhA | 0.42 | ABCV34_RS11575 | | TetR/AcrR family transcriptional regulator | low | > 48 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.41 | GFF1660 | | Flagellar biosynthesis protein FlhA | 0.13 | GFF3299 | | Transcriptional regulator RutR of pyrimidine catabolism (TetR family) | low | > 78 |
| Pantoea agglomerans CFBP13505 P0401 | 0.40 | PagCFBP13505_RS02230 | | flagellar biosynthesis protein FlhA | 0.32 | PagCFBP13505_RS01375 | | TetR family transcriptional regulator | low | > 74 |
| Pantoea sp. MT58 | 0.40 | IAI47_08350 | | flagellar biosynthesis protein FlhA | 0.33 | IAI47_07270 | | TetR family transcriptional regulator | low | > 76 |
| Enterobacter sp. TBS_079 | 0.40 | MPMX20_02783 | | Flagellar biosynthesis protein FlhA | 0.29 | MPMX20_00655 | | HTH-type transcriptional repressor NicS | low | > 85 |
| Enterobacter asburiae PDN3 | 0.39 | EX28DRAFT_0681 | | flagellar biosynthesis protein FlhA | 0.29 | EX28DRAFT_3565 | | transcriptional regulator, TetR family | low | > 76 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.38 | GFF1431 | | Flagellar biosynthesis protein FlhA | 0.45 | GFF5228 | | Transcriptional regulator, TetR family | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.38 | Ac3H11_1384 | | Flagellar biosynthesis protein FlhA | 0.44 | Ac3H11_1230 | | Transcriptional regulator, TetR family | low | > 79 |
| Azospirillum sp. SherDot2 | 0.31 | MPMX19_04089 | | Flagellar biosynthesis protein FlhA | 0.36 | MPMX19_03530 | | HTH-type transcriptional repressor NicS | low | > 112 |
| Azospirillum brasilense Sp245 | 0.30 | AZOBR_RS29955 | | flagellar biosynthesis protein FlhA | 0.31 | AZOBR_RS11765 | | TetR family transcriptional regulator | low | > 97 |
| Caulobacter crescentus NA1000 | 0.29 | CCNA_00956 | | flagellar biosynthesis protein FlhA | 0.26 | CCNA_02691 | | TetR-family transcriptional regulator | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.29 | CCNA_00956 | | flagellar biosynthesis protein FlhA | 0.26 | CCNA_02691 | | TetR-family transcriptional regulator | low | > 67 |
| Agrobacterium fabrum C58 | 0.27 | Atu0581 | | flagellar biosynthesis protein | 0.42 | Atu4530 | | TetR family transcriptional regulator | low | > 89 |
| Xanthobacter sp. DMC5 | 0.27 | GFF4511 | | Flagellar biosynthesis protein FlhA | 0.33 | GFF4550 | | HTH-type transcriptional repressor NicS | — | — |
| Sinorhizobium meliloti 1021 | 0.26 | SMc03054 | | flagellar biosynthesis protein FlhA | 0.42 | SM_b20033 | | transcriptional regulator | 0.18 | 95 |
Not shown: 36 genomes with orthologs for GFF3721 only; 4 genomes with orthologs for GFF1524 only