Conservation of cofitness between PS417_02480 and PS417_07065 in Pseudomonas simiae WCS417

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_02480 DNA mismatch repair protein 1.0 PS417_07065 tripartite tricarboxylate transporter TctA 0.37 4
Pseudomonas fluorescens SBW25 0.98 PFLU_RS02560 DNA mismatch repair endonuclease MutL 1.00 PFLU_RS07140 tripartite tricarboxylate transporter permease low > 109
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS02560 DNA mismatch repair endonuclease MutL 1.00 PFLU_RS07140 tripartite tricarboxylate transporter permease low > 109
Pseudomonas fluorescens FW300-N2E2 0.90 Pf6N2E2_3616 DNA mismatch repair protein MutL 0.91 Pf6N2E2_2770 Tricarboxylate transport membrane protein TctA low > 103
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_13135 DNA mismatch repair protein 0.94 AO353_17570 tripartite tricarboxylate transporter TctA low > 101
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_1414 DNA mismatch repair protein MutL 0.96 Pf1N1B4_3311 Tricarboxylate transport membrane protein TctA low > 87
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_08665 DNA mismatch repair protein 0.92 AO356_04625 tripartite tricarboxylate transporter TctA low > 104
Pseudomonas syringae pv. syringae B728a 0.88 Psyr_0570 DNA mismatch repair protein MutL 0.95 Psyr_3968 Protein of unknown function DUF112 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.88 Psyr_0570 DNA mismatch repair protein MutL 0.95 Psyr_3968 Protein of unknown function DUF112 low > 86
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_156 DNA mismatch repair protein MutL 0.92 PfGW456L13_4528 Tricarboxylate transport membrane protein TctA low > 87
Pseudomonas sp. RS175 0.88 PFR28_05119 DNA mismatch repair protein MutL 0.91 PFR28_00679 hypothetical protein low > 88
Pseudomonas putida KT2440 0.85 PP_4896 DNA mismatch repair protein MutL 0.93 PP_1416 putative Tricarboxylate transport protein TctA low > 96
Pseudomonas sp. S08-1 0.81 OH686_09480 DNA mismatch repair protein MutL 0.70 OH686_19985 Tripartite tricarboxylate transporter TctA family low > 80
Pseudomonas stutzeri RCH2 0.80 Psest_0681 DNA mismatch repair protein MutL 0.71 Psest_0208 Uncharacterized protein conserved in bacteria low > 67
Marinobacter adhaerens HP15 0.60 HP15_2501 DNA mismatch repair protein mutL 0.52 HP15_2659 Citrate uptake transporter, large transmembrane component TctA (from data) low > 73
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS05230 DNA mismatch repair endonuclease MutL 0.37 RALBFv3_RS13190 tripartite tricarboxylate transporter permease low > 76
Ralstonia solanacearum UW163 0.43 UW163_RS08395 DNA mismatch repair endonuclease MutL 0.37 UW163_RS00380 tripartite tricarboxylate transporter permease — —
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS04190 DNA mismatch repair protein 0.23 HSERO_RS16690 C4-dicarboxylate ABC transporter permease low > 78
Ralstonia solanacearum GMI1000 0.43 RS_RS12850 DNA mismatch repair protein MutL 0.39 RS_RS03985 tripartite tricarboxylate transporter permease low > 80
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS00870 DNA mismatch repair endonuclease MutL 0.39 ABZR87_RS09270 tripartite tricarboxylate transporter permease low > 80
Ralstonia solanacearum PSI07 0.42 RPSI07_RS12070 DNA mismatch repair endonuclease MutL 0.38 RPSI07_RS20030 tripartite tricarboxylate transporter permease low > 81
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF5485 DNA mismatch repair protein MutL 0.67 GFF3031 Tricarboxylate transport membrane protein TctA low > 90
Variovorax sp. SCN45 0.39 GFF4800 DNA mismatch repair protein MutL 0.38 GFF1548 Tripartite tricarboxylate transporter TctA family low > 127
Variovorax sp. OAS795 0.39 ABID97_RS20310 DNA mismatch repair endonuclease MutL 0.36 ABID97_RS25820 tripartite tricarboxylate transporter permease low > 91
Azospirillum brasilense Sp245 0.36 AZOBR_RS05025 DNA mismatch repair protein MutL 0.37 AZOBR_RS25235 hypothetical protein low > 97
Azospirillum sp. SherDot2 0.35 MPMX19_01619 DNA mismatch repair protein MutL 0.38 MPMX19_00428 hypothetical protein low > 112
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_01825 DNA mismatch repair protein MutL 0.38 CSW01_06715 tripartite tricarboxylate transporter permease low > 62
Serratia liquefaciens MT49 0.35 IAI46_01615 DNA mismatch repair endonuclease MutL 0.66 IAI46_17890 tripartite tricarboxylate transporter permease low > 86
Dickeya dadantii 3937 0.35 DDA3937_RS18620 DNA mismatch repair endonuclease MutL 0.67 DDA3937_RS14500 tripartite tricarboxylate transporter permease low > 74
Dickeya dianthicola 67-19 0.35 HGI48_RS18555 DNA mismatch repair endonuclease MutL 0.67 HGI48_RS14470 tripartite tricarboxylate transporter permease low > 71
Pantoea sp. MT58 0.34 IAI47_02580 DNA mismatch repair endonuclease MutL 0.69 IAI47_06200 tripartite tricarboxylate transporter permease low > 76
Dickeya dianthicola ME23 0.34 DZA65_RS19690 DNA mismatch repair endonuclease MutL 0.67 DZA65_RS15405 tripartite tricarboxylate transporter permease low > 75
Klebsiella michiganensis M5al 0.34 BWI76_RS02525 DNA mismatch repair protein MutL 0.67 BWI76_RS20045 hypothetical protein low > 92
Phaeobacter inhibens DSM 17395 0.34 PGA1_c32740 DNA mismatch repair protein MutL 0.33 PGA1_c07960 putative integral membrane protein low > 62
Enterobacter sp. TBS_079 0.34 MPMX20_00451 DNA mismatch repair protein MutL 0.66 MPMX20_03195 hypothetical protein low > 85
Escherichia fergusonii Becca 0.34 EFB2_04365 DNA mismatch repair protein MutL 0.28 EFB2_04789 hypothetical protein low > 86
Sinorhizobium meliloti 1021 0.34 SMc00932 DNA mismatch repair protein 0.36 SM_b20726 hypothetical protein low > 103
Escherichia coli ECOR38 0.34 HEPCGN_10495 mutL DNA mismatch repair endonuclease MutL 0.28 HEPCGN_12980 C4-dicarboxylate ABC transporter permease low > 85
Escherichia coli BL21 0.34 ECD_04037 methyl-directed mismatch repair protein 0.28 ECD_03719 hypothetical protein low > 60
Rhizobium sp. OAE497 0.34 ABIE40_RS05235 DNA mismatch repair endonuclease MutL 0.35 ABIE40_RS16410 tripartite tricarboxylate transporter permease low > 107
Escherichia coli Nissle 1917 0.34 ECOLIN_RS24220 DNA mismatch repair endonuclease MutL 0.28 ECOLIN_RS22080 tripartite tricarboxylate transporter permease low > 52
Dinoroseobacter shibae DFL-12 0.33 Dshi_0363 DNA mismatch repair protein MutL (RefSeq) 0.34 Dshi_1218 protein of unknown function DUF112 transmembrane (RefSeq) low > 64
Agrobacterium fabrum C58 0.33 Atu0699 DNA mismatch repair protein MutL 0.37 Atu5332 hypothetical protein — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF823 DNA mismatch repair protein MutL 0.69 GFF1562 Tricarboxylate transport membrane protein TctA low > 78
Rhodopseudomonas palustris CGA009 0.32 TX73_022655 DNA mismatch repair endonuclease MutL 0.38 TX73_018100 tripartite tricarboxylate transporter permease low > 86
Bosea sp. OAE506 0.31 ABIE41_RS23235 DNA mismatch repair endonuclease MutL 0.37 ABIE41_RS22680 tripartite tricarboxylate transporter permease low > 77
Cupriavidus basilensis FW507-4G11 0.26 RR42_RS17205 DNA mismatch repair protein 0.39 RR42_RS34870 hypothetical protein low > 128
Acidovorax sp. GW101-3H11 0.17 Ac3H11_313 DNA mismatch repair protein MutL 0.35 Ac3H11_1732 Tricarboxylate transport membrane protein TctA 0.58 4

Not shown: 47 genomes with orthologs for PS417_02480 only; 1 genomes with orthologs for PS417_07065 only