Conservation of cofitness between EFB2_00846 and EFB2_04556 in Escherichia fergusonii Becca

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia fergusonii Becca 1.0 EFB2_00846 Type II secretion system protein E 1.0 EFB2_04556 tRNA-dihydrouridine(20/20a) synthase 0.43 2
Escherichia coli ECOR38 0.98 HEPCGN_18055 gspE general secretion pathway protein E 0.96 HEPCGN_11560 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 87
Escherichia coli BL21 0.98 ECD_02837 putative type II secretion protein GspE 0.97 ECD_03921 tRNA-dihydrouridine synthase A low > 61
Escherichia coli ECOR27 0.98 NOLOHH_10980 gspE general secretion pathway protein E 0.96 NOLOHH_05195 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.95 OHPLBJKB_00740 Type II secretion system protein E 0.96 OHPLBJKB_03994 tRNA-dihydrouridine(20/20a) synthase low > 73
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_13785 type II secretion system protein GspE 0.74 CSW01_01985 tRNA dihydrouridine(20/20a) synthase DusA — —
Shewanella amazonensis SB2B 0.64 Sama_0170 general secretion pathway protein E (RefSeq) 0.68 Sama_3055 tRNA-dihydrouridine synthase A (RefSeq) low > 62
Shewanella loihica PV-4 0.63 Shew_3618 general secretory pathway protein E (RefSeq) 0.65 Shew_0536 tRNA-dihydrouridine synthase A (RefSeq) low > 60
Kangiella aquimarina DSM 16071 0.62 B158DRAFT_0690 general secretory pathway protein E 0.58 B158DRAFT_2018 tRNA dihydrouridine synthase A low > 40
Alteromonas macleodii MIT1002 0.62 MIT1002_03977 Type II traffic warden ATPase 0.59 MIT1002_03387 putative tRNA-dihydrouridine synthase low > 70
Shewanella sp. ANA-3 0.62 Shewana3_0152 type II secretion system protein E (GspE) (RefSeq) 0.69 Shewana3_0718 tRNA-dihydrouridine synthase A (RefSeq) low > 73
Shewanella oneidensis MR-1 0.61 SO0167 gspE general secretion pathway protein E (NCBI ptt file) 0.69 SO3912 TIM-barrel protein, yjbN family (NCBI ptt file) low > 76
Dickeya dianthicola ME23 0.61 DZA65_RS15675 type II secretion system ATPase GspE 0.79 DZA65_RS18620 tRNA dihydrouridine(20/20a) synthase DusA low > 75
Dickeya dianthicola 67-19 0.60 HGI48_RS14730 type II secretion system ATPase GspE 0.78 HGI48_RS17540 tRNA dihydrouridine(20/20a) synthase DusA low > 71
Dickeya dadantii 3937 0.60 DDA3937_RS14795 type II secretion system ATPase GspE 0.80 DDA3937_RS17480 tRNA dihydrouridine(20/20a) synthase DusA low > 74
Marinobacter adhaerens HP15 0.58 HP15_1602 type II secretion system protein E 0.56 HP15_2240 tRNA-dihydrouridine synthase, TIM-barrel, YjbN low > 73
Pseudomonas sp. S08-1 0.58 OH686_11785 type II secretion system protein E 0.55 OH686_22745 tRNA-dihydrouridine(20/20a) synthase low > 80
Klebsiella michiganensis M5al 0.57 BWI76_RS05085 general secretion pathway protein GspE 0.92 BWI76_RS01900 tRNA-dihydrouridine synthase A low > 92
Pseudomonas stutzeri RCH2 0.57 Psest_4202 general secretory pathway protein E 0.56 Psest_2706 tRNA dihydrouridine synthase A low > 67
Pectobacterium carotovorum WPP14 0.56 HER17_RS06690 type II secretion system ATPase GspE 0.82 HER17_RS03680 tRNA dihydrouridine(20/20a) synthase DusA 0.55 3
Acinetobacter radioresistens SK82 0.56 MPMX26_00578 Type II secretion system protein E 0.51 MPMX26_00482 tRNA-dihydrouridine(20/20a) synthase low > 36
Escherichia coli ECRC102 0.55 NIAGMN_28600 gspE type II secretion system ATPase GspE 0.96 NIAGMN_10790 dusA tRNA dihydrouridine(20/20a) synthase DusA — —
Escherichia coli ECRC100 0.55 OKFHMN_00280 gspE type II secretion system ATPase GspE 0.96 OKFHMN_12945 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 80
Escherichia coli ECRC98 0.55 JDDGAC_30300 gspE type II secretion system ATPase GspE 0.96 JDDGAC_16580 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 86
Escherichia coli ECRC101 0.55 MCAODC_15270 gspE type II secretion system ATPase GspE 0.96 MCAODC_03455 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 87
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_09340 type II secretion system protein GspE 0.52 AO356_02170 tRNA-dihydrouridine synthase A low > 104
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_3745 General secretion pathway protein E 0.52 Pf6N2E2_2257 tRNA dihydrouridine synthase A low > 103
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_12550 type II secretion system protein GspE 0.53 AO353_00295 tRNA-dihydrouridine synthase A low > 101
Erwinia tracheiphila SCR3 0.51 LU632_RS25235 gspE type II secretion system ATPase GspE 0.74 LU632_RS23765 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 74
Pseudomonas fluorescens GW456-L13 0.50 PfGW456L13_265 General secretion pathway protein E 0.50 PfGW456L13_3987 tRNA dihydrouridine synthase A low > 87
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS29515 type II secretion system ATPase GspE 0.57 QEN71_RS22650 tRNA dihydrouridine(20/20a) synthase DusA low > 153
Burkholderia phytofirmans PsJN 0.48 BPHYT_RS19600 general secretion pathway protein E 0.55 BPHYT_RS08700 tRNA-dihydrouridine synthase A low > 109
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_02355 type II secretion system protein E (GspE) 0.53 H281DRAFT_00766 tRNA-U16,U17-dihydrouridine synthase low > 103
Pseudomonas putida KT2440 0.48 PP_1047 putative protein secretion protein for export 0.56 PP_2169 tRNA-dihydrouridine synthase A low > 96
Caulobacter crescentus NA1000 0.48 CCNA_00173 type II secretion pathway protein E 0.54 CCNA_01364 NIFR3-like protein low > 66
Caulobacter crescentus NA1000 Δfur 0.48 CCNA_00173 type II secretion pathway protein E 0.54 CCNA_01364 NIFR3-like protein low > 67
Hydrogenophaga sp. GW460-11-11-14-LB1 0.47 GFF1391 General secretion pathway protein E 0.50 GFF4791 tRNA dihydrouridine synthase A low > 90
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.943.1 General secretion pathway protein E 0.47 Xcc-8004.5010.1 tRNA dihydrouridine synthase A low > 74
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS19525 general secretion pathway protein GspE 0.52 RR42_RS12665 tRNA-dihydrouridine synthase A low > 128
Ralstonia solanacearum PSI07 0.46 RPSI07_RS09515 type II secretion system protein GspE 0.54 RPSI07_RS17630 tRNA dihydrouridine(20/20a) synthase DusA low > 81
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS03455 type II secretion system ATPase GspE 0.54 ABZR87_RS11300 tRNA dihydrouridine(20/20a) synthase DusA low > 80
Ralstonia solanacearum UW163 0.46 UW163_RS05880 type II secretion system protein GspE 0.53 UW163_RS13175 tRNA dihydrouridine(20/20a) synthase DusA — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS07745 type II secretion system protein GspE 0.53 RALBFv3_RS15730 tRNA dihydrouridine(20/20a) synthase DusA low > 76
Pseudomonas fluorescens SBW25 0.46 PFLU_RS15745 type II secretion system ATPase GspE 0.54 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA low > 109
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS15745 type II secretion system ATPase GspE 0.54 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA low > 109
Variovorax sp. SCN45 0.44 GFF5234 General secretion pathway protein E / Type II secretion cytoplasmic ATP binding protein (PulE, ATPase) 0.51 GFF928 tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) low > 127
Acidovorax sp. GW101-3H11 0.44 Ac3H11_2029 General secretion pathway protein E / Type II secretion cytoplasmic ATP binding protein (PulE, ATPase) 0.52 Ac3H11_2288 tRNA dihydrouridine synthase A low > 79
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_3151 type II secretion system protein E (GspE) 0.55 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_3151 type II secretion system protein E (GspE) 0.55 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase low > 86
Rhodanobacter denitrificans MT42 0.38 LRK55_RS09600 type II secretion system ATPase GspE 0.54 LRK55_RS05750 tRNA dihydrouridine(20/20a) synthase DusA low > 63
Lysobacter sp. OAE881 0.38 ABIE51_RS04520 type II secretion system ATPase GspE 0.49 ABIE51_RS03925 tRNA dihydrouridine(20/20a) synthase DusA low > 62
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS09960 type II secretion system ATPase GspE 0.54 LRK54_RS05995 tRNA dihydrouridine(20/20a) synthase DusA low > 59
Rhodanobacter sp. FW510-T8 0.38 OKGIIK_16215 gspE type II secretion system ATPase GspE 0.53 OKGIIK_00625 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 52

Not shown: 3 genomes with orthologs for EFB2_00846 only; 31 genomes with orthologs for EFB2_04556 only