Conservation of cofitness between ECD_01675 and ECD_02354 in Escherichia coli BL21

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_01675 UPF0061 family protein 1.0 ECD_02354 malic enzyme: putative oxidoreductase/phosphotransacetylase 0.54 6
Escherichia coli ECOR38 0.98 HEPCGN_05490 selO protein adenylyltransferase SelO 1.00 HEPCGN_21175 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 85
Escherichia coli BW25113 0.98 b1706 ydiU hypothetical protein (NCBI) 1.00 b2463 maeB malic enzyme (NCBI) low > 76
Escherichia coli ECRC98 0.98 JDDGAC_01700 selO protein adenylyltransferase SelO 1.00 JDDGAC_25950 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase — —
Escherichia coli ECRC99 0.98 KEDOAH_00985 selO protein adenylyltransferase SelO 0.99 KEDOAH_06215 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase — —
Escherichia coli ECRC101 0.98 OKFHMN_27125 selO protein adenylyltransferase SelO 1.00 OKFHMN_22005 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase — —
Escherichia coli ECRC101 0.98 MCAODC_18285 selO protein adenylyltransferase SelO 1.00 MCAODC_12535 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase — —
Escherichia coli ECRC102 0.98 NIAGMN_00940 selO protein adenylyltransferase SelO 1.00 NIAGMN_19775 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase — —
Escherichia coli ECOR27 0.98 NOLOHH_17645 selO protein adenylyltransferase SelO 0.99 NOLOHH_13685 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 57
Escherichia fergusonii Becca 0.98 EFB2_02285 Protein adenylyltransferase SelO 1.00 EFB2_01425 NADP-dependent malic enzyme low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS09535 protein adenylyltransferase SelO 1.00 ECOLIN_RS14055 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF3534 Selenoprotein O and cysteine-containing homologs 0.95 GFF2198 NADP-dependent malic enzyme (EC 1.1.1.40) low > 78
Enterobacter asburiae PDN3 0.81 EX28DRAFT_1713 Uncharacterized conserved protein 0.93 EX28DRAFT_0198 Malic enzyme low > 76
Enterobacter sp. TBS_079 0.81 MPMX20_01907 Protein adenylyltransferase SelO 0.93 MPMX20_03324 NADP-dependent malic enzyme low > 85
Klebsiella michiganensis M5al 0.79 BWI76_RS17085 hypothetical protein 0.94 BWI76_RS20830 bifunctional malic enzyme oxidoreductase/phosphotransacetylase low > 92
Serratia liquefaciens MT49 0.67 IAI46_11065 YdiU family protein 0.87 IAI46_18585 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 86
Dickeya dianthicola 67-19 0.66 HGI48_RS13010 YdiU family protein 0.84 HGI48_RS04345 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 71
Dickeya dianthicola ME23 0.66 DZA65_RS13470 YdiU family protein 0.84 DZA65_RS04265 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 75
Dickeya dadantii 3937 0.65 DDA3937_RS12935 YdiU family protein 0.86 DDA3937_RS04355 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 74
Rahnella sp. WP5 0.65 EX31_RS13970 YdiU family protein 0.86 EX31_RS20275 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 89
Pectobacterium carotovorum WPP14 0.65 HER17_RS08850 YdiU family protein 0.86 HER17_RS17280 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 75
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS09550 hypothetical protein 0.63 BPHYT_RS18310 malic enzyme low > 109
Paraburkholderia graminis OAS925 0.45 ABIE53_002149 uncharacterized protein YdiU (UPF0061 family) 0.63 ABIE53_000015 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) low > 113
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS11220 hypothetical protein 0.62 HSERO_RS16825 NADP-dependent malic enzyme oxidoreductase low > 78
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_00914 Uncharacterized conserved protein YdiU, UPF0061 family 0.63 H281DRAFT_05846 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) low > 103
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS21900 YdiU family protein 0.63 QEN71_RS28455 NADP-dependent malic enzyme low > 153
Ralstonia solanacearum GMI1000 0.43 RS_RS08830 YdiU family protein 0.62 RS_RS10650 NADP-dependent malic enzyme low > 80
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS11160 hypothetical protein 0.63 RR42_RS05210 malic enzyme low > 128
Acidovorax sp. GW101-3H11 0.43 Ac3H11_2534 Selenoprotein O and cysteine-containing homologs 0.59 Ac3H11_1079 NADP-dependent malic enzyme (EC 1.1.1.40) low > 79
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS12630 protein adenylyltransferase SelO 0.61 ABZR87_RS15110 NADP-dependent malic enzyme low > 80
Variovorax sp. OAS795 0.42 ABID97_RS15700 protein adenylyltransferase SelO 0.61 ABID97_RS22340 NADP-dependent malic enzyme low > 91
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS01180 YdiU family protein 0.62 RALBFv3_RS03260 NADP-dependent malic enzyme low > 76
Ralstonia solanacearum UW163 0.42 UW163_RS14490 YdiU family protein 0.62 UW163_RS10465 NADP-dependent malic enzyme — —
Ralstonia solanacearum PSI07 0.42 RPSI07_RS16295 YdiU family protein 0.62 RPSI07_RS14050 NADP-dependent malic enzyme low > 81
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF4580 Selenoprotein O and cysteine-containing homologs 0.60 GFF3306 NADP-dependent malic enzyme (EC 1.1.1.40) low > 90
Variovorax sp. SCN45 0.41 GFF1330 UPF0061 protein YdiU 0.61 GFF1796 NADP-dependent malic enzyme (EC 1.1.1.40) low > 127
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.2272.1 Selenoprotein O and cysteine-containing homologs 0.58 Xcc-8004.1035.1 NADP-dependent malic enzyme (EC 1.1.1.40) — —
Lysobacter sp. OAE881 0.39 ABIE51_RS12255 protein adenylyltransferase SelO 0.60 ABIE51_RS18820 NADP-dependent malic enzyme low > 62
Rhodanobacter sp. FW510-T8 0.38 OKGIIK_09030 selO YdiU family protein 0.58 OKGIIK_12705 pta NADP-dependent malic enzyme low > 52
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS00335 protein adenylyltransferase SelO 0.58 ABZR86_RS12415 NADP-dependent malic enzyme low > 74
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS15955 YdiU family protein 0.59 LRK54_RS11170 NADP-dependent malic enzyme low > 59
Rhodanobacter denitrificans MT42 0.37 LRK55_RS15710 YdiU family protein 0.59 LRK55_RS10875 NADP-dependent malic enzyme — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.37 CA264_03360 hypothetical protein 0.45 CA264_14540 NADP-dependent malic enzyme low > 74
Sinorhizobium meliloti 1021 0.36 SMc00453 hypothetical protein 0.56 SMc00169 malic enzyme low > 103
Agrobacterium fabrum C58 0.35 Atu0945 hypothetical protein 0.54 Atu1652 NADP-dependent malic enzyme — —
Acinetobacter radioresistens SK82 0.35 MPMX26_02624 Protein adenylyltransferase SelO 0.61 MPMX26_01000 NADP-dependent malic enzyme low > 36
Castellaniella sp019104865 MT123 0.35 ABCV34_RS04315 YdiU family protein 0.60 ABCV34_RS01715 NADP-dependent malic enzyme low > 48
Rhizobium sp. OAE497 0.35 ABIE40_RS04755 protein adenylyltransferase SelO 0.56 ABIE40_RS10450 NADP-dependent malic enzyme 0.66 29
Dinoroseobacter shibae DFL-12 0.33 Dshi_1157 protein of unknown function UPF0061 (RefSeq) 0.51 Dshi_0826 malic protein NAD-binding (RefSeq) low > 64
Rhodopseudomonas palustris CGA009 0.33 TX73_015750 YdiU family protein 0.51 TX73_015740 NADP-dependent malic enzyme low > 86
Phaeobacter inhibens DSM 17395 0.32 PGA1_c11360 Uncharacterized conserved protein 0.54 PGA1_c11910 Malate dehydrogenase (decarboxylating) (EC 1.1.1.39) (from data) low > 62
Bosea sp. OAE506 0.32 ABIE41_RS01530 protein adenylyltransferase SelO 0.53 ABIE41_RS21715 NADP-dependent malic enzyme low > 77
Dechlorosoma suillum PS 0.31 Dsui_1465 hypothetical protein 0.63 Dsui_0543 malic enzyme low > 51

Not shown: 23 genomes with orthologs for ECD_01675 only; 19 genomes with orthologs for ECD_02354 only