Conservation of cofitness between ECD_02776 and ECD_01276 in Escherichia coli BL21

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent 1.0 ECD_01276 repressor for the divergent puu operons, putrescine inducible 0.75 10
Escherichia coli ECOR38 1.00 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E 1.00 HEPCGN_25765 puuR HTH-type transcriptional regulator PuuR low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E 1.00 OHPLBJKB_02383 HTH-type transcriptional regulator PuuR low > 73
Escherichia coli ECRC99 1.00 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 KEDOAH_26340 puuR HTH-type transcriptional regulator PuuR — —
Escherichia coli ECRC102 1.00 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 NIAGMN_26605 puuR HTH-type transcriptional regulator PuuR — —
Escherichia coli ECRC98 1.00 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 JDDGAC_04980 puuR HTH-type transcriptional regulator PuuR low > 86
Escherichia coli ECRC100 1.00 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 OKFHMN_02435 puuR HTH-type transcriptional regulator PuuR low > 80
Escherichia coli BW25113 1.00 b2946 yggJ orf, hypothetical protein (VIMSS) 1.00 b1299 puuR DNA-binding transcriptional repressor (NCBI) low > 76
Escherichia coli ECRC101 1.00 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 MCAODC_15835 puuR HTH-type transcriptional regulator PuuR low > 87
Escherichia coli ECOR27 1.00 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 NOLOHH_20120 puuR HTH-type transcriptional regulator PuuR low > 75
Escherichia coli ECRC62 1.00 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 BNILDI_18270 puuR HTH-type transcriptional regulator PuuR low > 75
Enterobacter asburiae PDN3 0.89 EX28DRAFT_2984 RNA methyltransferase, RsmE family 0.97 EX28DRAFT_1500 Predicted transcriptional regulators low > 76
Klebsiella michiganensis M5al 0.86 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.97 BWI76_RS10700 XRE family transcriptional regulator low > 92
Rahnella sp. WP5 0.85 EX31_RS02660 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.79 EX31_RS17905 HTH-type transcriptional regulator PuuR low > 89
Serratia liquefaciens MT49 0.83 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.86 IAI46_10550 HTH-type transcriptional regulator PuuR low > 86
Pantoea sp. MT58 0.82 IAI47_03620 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.71 IAI47_07115 HTH-type transcriptional regulator PuuR low > 76
Shewanella sp. ANA-3 0.68 Shewana3_3444 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.39 Shewana3_3100 XRE family transcriptional regulator (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.15 CSW01_15345 XRE family transcriptional regulator low > 62
Shewanella oneidensis MR-1 0.68 SO0832 conserved hypothetical protein TIGR00046 (NCBI ptt file) 0.39 SO1265 transcriptional regulator, putative (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.66 Sama_0575 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.36 Sama_2646 XRE family transcriptional regulator (RefSeq) low > 62
Shewanella loihica PV-4 0.65 Shew_3224 hypothetical protein (RefSeq) 0.38 Shew_0970 XRE family transcriptional regulator (RefSeq) low > 60
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_08050 16S rRNA methyltransferase 0.37 AO353_09140 XRE family transcriptional regulator low > 101
Pseudomonas fluorescens SBW25 0.42 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.36 PFLU_RS29365 cupin domain-containing protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.36 PFLU_RS29365 cupin domain-containing protein low > 109
Pseudomonas sp. RS175 0.42 PFR28_04209 Ribosomal RNA small subunit methyltransferase E 0.37 PFR28_04396 HTH-type transcriptional regulator PuuR low > 88
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_4630 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.37 Pf6N2E2_4394 Putrescine utilization regulator low > 103
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_13565 16S rRNA methyltransferase 0.37 AO356_12635 XRE family transcriptional regulator 0.24 62
Pseudomonas putida KT2440 0.41 PP_4985 16S rRNA m3U1498 methyltransferase 0.37 PP_5268 DNA-binding transcriptional repressor PuuR-putrescine low > 96
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_1043 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.37 PfGW456L13_815 Putrescine utilization regulator low > 87
Pseudomonas simiae WCS417 0.41 PS417_26545 16S rRNA methyltransferase 0.36 PS417_27690 XRE family transcriptional regulator low > 88
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_2376 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.36 Pf1N1B4_2147 Putrescine utilization regulator — —
Pseudomonas stutzeri RCH2 0.40 Psest_0305 RNA methyltransferase, RsmE family 0.40 Psest_3791 Predicted transcriptional regulators low > 67
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.37 Psyr_0238 Helix-turn-helix motif protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.37 Psyr_0238 Helix-turn-helix motif protein low > 86
Pseudomonas sp. S08-1 0.39 OH686_10855 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.37 OH686_13700 Putrescine utilization regulator low > 80
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS16855 16S rRNA methyltransferase 0.35 BPHYT_RS23170 XRE family transcriptional regulator low > 109
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS17590 16S rRNA methyltransferase 0.21 RR42_RS00225 XRE family transcriptional regulator low > 128
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_06311 16S rRNA (uracil1498-N3)-methyltransferase 0.19 H281DRAFT_03130 transcriptional regulator, XRE family with cupin sensor low > 103
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS01505 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.14 ABZR87_RS06145 XRE family transcriptional regulator low > 80
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS27020 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.33 QEN71_RS12920 cupin domain-containing protein low > 153
Paraburkholderia graminis OAS925 0.32 ABIE53_003540 16S rRNA (uracil1498-N3)-methyltransferase 0.18 ABIE53_004168 transcriptional regulator with XRE-family HTH domain low > 113
Azospirillum sp. SherDot2 0.18 MPMX19_00577 Ribosomal RNA small subunit methyltransferase E 0.33 MPMX19_04921 HTH-type transcriptional regulator PuuR low > 112
Fusobacterium nucleatum SB010 0.18 HUW76_04180 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.18 HUW76_01135 cupin domain-containing protein low > 35
Agrobacterium fabrum C58 0.17 Atu0657 hypothetical protein 0.28 Atu3328 aldehyde dehydrogenase low > 89
Bosea sp. OAE506 0.16 ABIE41_RS23100 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.33 ABIE41_RS05345 cupin domain-containing protein low > 77
Sinorhizobium meliloti 1021 0.16 SMc00826 16S ribosomal RNA methyltransferase RsmE 0.29 SMc04387 aldehyde dehydrogenase low > 103
Azospirillum brasilense Sp245 0.15 AZOBR_RS11890 16S rRNA methyltransferase 0.31 AZOBR_RS19640 aldehyde dehydrogenase low > 97
Rhodospirillum rubrum S1H 0.13 Rru_A0571 hypothetical protein (NCBI) 0.30 Rru_A2042 Transcriptional Regulator, XRE family with Cupin sensor domain (NCBI) low > 58
Desulfovibrio vulgaris Miyazaki F 0.10 DvMF_0340 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.15 DvMF_2356 transcriptional regulator, XRE family (RefSeq) low > 51

Not shown: 51 genomes with orthologs for ECD_02776 only; 1 genomes with orthologs for ECD_01276 only