Conservation of cofitness between DZA65_RS04530 and DZA65_RS17160 in Dickeya dianthicola ME23

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola ME23 1.0 DZA65_RS04530 LysR family transcriptional regulator 1.0 DZA65_RS17160 pantoate--beta-alanine ligase 0.40 16
Dickeya dianthicola 67-19 0.99 HGI48_RS04610 LysR family transcriptional regulator 0.98 HGI48_RS16075 pantoate--beta-alanine ligase 0.43 45
Dickeya dadantii 3937 0.95 DDA3937_RS04650 LysR family transcriptional regulator 0.91 DDA3937_RS15960 pantoate--beta-alanine ligase low > 74
Pantoea sp. MT58 0.52 IAI47_17520 LysR family transcriptional regulator 0.76 IAI47_15660 pantoate--beta-alanine ligase low > 76
Variovorax sp. SCN45 0.44 GFF7171 Transcriptional regulator DmlR, LysR family 0.39 GFF2578 Pantoate--beta-alanine ligase (EC 6.3.2.1) low > 127
Dechlorosoma suillum PS 0.43 Dsui_1892 transcriptional regulator 0.38 Dsui_1470 pantoate--beta-alanine ligase — —
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS25045 LysR family transcriptional regulator 0.34 BPHYT_RS04925 pantothenate synthetase — —
Ralstonia solanacearum PSI07 0.43 RPSI07_RS15095 LysR family transcriptional regulator 0.39 RPSI07_RS12935 pantoate--beta-alanine ligase — —
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS33760 hypothetical protein 0.35 RR42_RS16055 pantothenate synthetase — —
Ralstonia solanacearum GMI1000 0.43 RS_RS21935 LysR family transcriptional regulator 0.39 RS_RS11985 pantoate--beta-alanine ligase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF2674 Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme 0.34 GFF1220 Pantoate--beta-alanine ligase (EC 6.3.2.1) — —
Acidovorax sp. GW101-3H11 0.42 Ac3H11_636 Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme 0.33 Ac3H11_2786 Pantoate--beta-alanine ligase (EC 6.3.2.1) low > 79
Variovorax sp. OAS795 0.42 ABID97_RS29215 LysR family transcriptional regulator 0.39 ABID97_RS07430 pantoate--beta-alanine ligase low > 91
Paraburkholderia graminis OAS925 0.42 ABIE53_005151 LysR family transcriptional activator of dmlA 0.34 ABIE53_001260 pantoate--beta-alanine ligase — —
Ralstonia solanacearum UW163 0.42 UW163_RS18425 LysR family transcriptional regulator 0.39 UW163_RS09235 pantoate--beta-alanine ligase — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS17035 LysR family transcriptional regulator 0.39 RALBFv3_RS04435 pantoate--beta-alanine ligase — —
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS37825 LysR substrate-binding domain-containing protein 0.35 QEN71_RS25065 pantoate--beta-alanine ligase — —
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS10340 LysR family transcriptional regulator 0.38 ABZR87_RS00030 pantoate--beta-alanine ligase — —
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_01533 transcriptional regulator, LysR family 0.34 H281DRAFT_00150 pantothenate synthetase — —
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_4411 Transcriptional regulator, LysR family 0.48 Pf1N1B4_2853 Pantoate--beta-alanine ligase (EC 6.3.2.1) — —
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS15205 LysR family transcriptional regulator 0.38 HSERO_RS15520 pantoate--beta-alanine ligase — —
Pseudomonas simiae WCS417 0.34 PS417_09420 LysR family transcriptional regulator 0.48 PS417_23915 pantoate--beta-alanine ligase 0.15 21
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS10075 LysR family transcriptional regulator 0.48 PFLU_RS25755 pantoate--beta-alanine ligase 0.12 68
Pseudomonas fluorescens SBW25 0.33 PFLU_RS10075 LysR family transcriptional regulator 0.48 PFLU_RS25755 pantoate--beta-alanine ligase low > 109
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF4227 Putative LysR family transcriptional regulator 0.71 GFF92 Pantoate--beta-alanine ligase (EC 6.3.2.1) low > 78
Agrobacterium fabrum C58 0.33 Atu3951 LysR family transcriptional regulator 0.37 Atu3482 pantoate--beta-alanine ligase low > 89
Pseudomonas sp. RS175 0.32 PFR28_01512 HTH-type transcriptional regulator DmlR 0.50 PFR28_03722 Pantothenate synthetase — —
Klebsiella michiganensis M5al 0.32 BWI76_RS10685 LysR family transcriptional regulator 0.71 BWI76_RS04990 pantoate--beta-alanine ligase low > 92
Lysobacter sp. OAE881 0.32 ABIE51_RS06090 LysR family transcriptional regulator 0.44 ABIE51_RS08030 pantoate--beta-alanine ligase — —
Pseudomonas stutzeri RCH2 0.32 Psest_1182 Transcriptional regulator 0.51 Psest_0995 pantoate--beta-alanine ligase — —
Serratia liquefaciens MT49 0.31 IAI46_21020 LysR family transcriptional regulator 0.81 IAI46_21245 pantoate--beta-alanine ligase low > 86
Rhizobium sp. OAE497 0.31 ABIE40_RS06595 LysR family transcriptional regulator 0.38 ABIE40_RS09460 pantoate--beta-alanine ligase low > 107
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_3594 Putative transcriptional regulator LYSR-type 0.50 PfGW456L13_1520 Pantoate--beta-alanine ligase (EC 6.3.2.1) low > 87
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS18110 LysR family transcriptional regulator 0.41 ABZR86_RS00820 pantoate--beta-alanine ligase — —
Escherichia coli ECRC102 0.30 NIAGMN_01435 dmlR DNA-binding transcriptional regulator DmlR 0.70 NIAGMN_08255 panC pantoate--beta-alanine ligase — —
Escherichia coli ECRC62 0.30 BNILDI_15935 dmlR DNA-binding transcriptional regulator DmlR 0.69 BNILDI_08920 panC pantoate--beta-alanine ligase low > 75
Escherichia coli ECOR27 0.30 NOLOHH_17150 dmlR DNA-binding transcriptional regulator DmlR 0.69 NOLOHH_02750 panC pantoate--beta-alanine ligase — —
Escherichia coli ECOR38 0.30 HEPCGN_05020 dmlR DNA-binding transcriptional regulator DmlR 0.70 HEPCGN_08380 panC pantoate--beta-alanine ligase low > 87
Escherichia coli ECRC101 0.30 MCAODC_18780 dmlR DNA-binding transcriptional regulator DmlR 0.70 MCAODC_00920 panC pantoate--beta-alanine ligase low > 87
Escherichia coli ECRC99 0.30 KEDOAH_01480 dmlR DNA-binding transcriptional regulator DmlR 0.70 KEDOAH_17750 panC pantoate--beta-alanine ligase — —
Escherichia coli ECRC100 0.30 OKFHMN_26630 dmlR DNA-binding transcriptional regulator DmlR 0.70 OKFHMN_10405 panC pantoate--beta-alanine ligase low > 80
Escherichia coli ECRC98 0.30 JDDGAC_01205 dmlR DNA-binding transcriptional regulator DmlR 0.70 JDDGAC_14000 panC pantoate--beta-alanine ligase — —
Escherichia coli BL21 0.30 ECD_01769 transcriptional activator of dmlA 0.70 ECD_00132 pantothenate synthetase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_01934 HTH-type transcriptional regulator DmlR 0.70 OHPLBJKB_03528 Pantothenate synthetase low > 73
Rahnella sp. WP5 0.30 EX31_RS18850 LysR family transcriptional regulator 0.75 EX31_RS03285 pantoate--beta-alanine ligase low > 89
Castellaniella sp019104865 MT123 0.30 ABCV34_RS12145 LysR family transcriptional regulator 0.34 ABCV34_RS14585 pantoate--beta-alanine ligase — —
Pseudomonas syringae pv. syringae B728a 0.30 Psyr_2397 transcriptional regulator, LysR family 0.52 Psyr_0827 pantothenate synthetase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.30 Psyr_2397 transcriptional regulator, LysR family 0.52 Psyr_0827 pantothenate synthetase low > 86
Escherichia coli BW25113 0.30 b3060 ygiP predicted DNA-binding transcriptional regulator (NCBI) 0.70 b0133 panC pantoate--beta-alanine ligase (NCBI) low > 76
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_19070 LysR family transcriptional regulator 0.61 CSW01_03130 pantoate--beta-alanine ligase — —
Escherichia fergusonii Becca 0.30 EFB2_00751 HTH-type transcriptional regulator DmlR 0.70 EFB2_03911 Pantothenate synthetase low > 86
Azospirillum sp. SherDot2 0.29 MPMX19_04441 HTH-type transcriptional regulator DmlR 0.38 MPMX19_04465 Pantothenate synthetase low > 112
Enterobacter sp. TBS_079 0.29 MPMX20_03495 HTH-type transcriptional regulator DmlR 0.71 MPMX20_00826 Pantothenate synthetase low > 85
Enterobacter asburiae PDN3 0.28 EX28DRAFT_1614 Transcriptional regulator 0.71 EX28DRAFT_3729 pantoate--beta-alanine ligase low > 76
Phaeobacter inhibens DSM 17395 0.25 PGA1_c05460 transcriptional regulator, LysR family 0.41 PGA1_c32040 pantothenate synthetase PanC — —
Pectobacterium carotovorum WPP14 0.25 HER17_RS18920 LysR family transcriptional regulator 0.83 HER17_RS05555 pantoate--beta-alanine ligase low > 75
Shewanella amazonensis SB2B 0.24 Sama_3218 LysR family transcriptional regulator (RefSeq) 0.50 Sama_0775 panC pantoate--beta-alanine ligase (RefSeq) — —
Alteromonas macleodii MIT1002 0.24 MIT1002_01798 D-malate degradation protein R 0.47 MIT1002_03695 Pantothenate synthetase — —

Not shown: 1 genomes with orthologs for DZA65_RS04530 only; 40 genomes with orthologs for DZA65_RS17160 only