Conservation of cofitness between DZA65_RS04530 and DZA65_RS00895 in Dickeya dianthicola ME23

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola ME23 1.0 DZA65_RS04530 LysR family transcriptional regulator 1.0 DZA65_RS00895 phosphoenolpyruvate carboxylase 0.41 12
Dickeya dianthicola 67-19 0.99 HGI48_RS04610 LysR family transcriptional regulator 0.99 HGI48_RS00850 phosphoenolpyruvate carboxylase 0.42 46
Dickeya dadantii 3937 0.95 DDA3937_RS04650 LysR family transcriptional regulator 0.98 DDA3937_RS20360 phosphoenolpyruvate carboxylase low > 74
Pantoea sp. MT58 0.52 IAI47_17520 LysR family transcriptional regulator 0.81 IAI47_00895 phosphoenolpyruvate carboxylase low > 76
Variovorax sp. SCN45 0.44 GFF7171 Transcriptional regulator DmlR, LysR family 0.21 GFF3838 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 127
Dechlorosoma suillum PS 0.43 Dsui_1892 transcriptional regulator 0.24 Dsui_1603 phosphoenolpyruvate carboxylase — —
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS25045 LysR family transcriptional regulator 0.22 BPHYT_RS05225 phosphoenolpyruvate carboxylase low > 109
Ralstonia solanacearum PSI07 0.43 RPSI07_RS15095 LysR family transcriptional regulator 0.25 RPSI07_RS13100 phosphoenolpyruvate carboxylase low > 81
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS33760 hypothetical protein 0.23 RR42_RS15905 phosphoenolpyruvate carboxylase low > 128
Ralstonia solanacearum GMI1000 0.43 RS_RS21935 LysR family transcriptional regulator 0.25 RS_RS11840 phosphoenolpyruvate carboxylase low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF2674 Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme 0.24 GFF115 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 90
Acidovorax sp. GW101-3H11 0.42 Ac3H11_636 Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme 0.24 Ac3H11_3553 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 79
Variovorax sp. OAS795 0.42 ABID97_RS29215 LysR family transcriptional regulator 0.21 ABID97_RS08220 phosphoenolpyruvate carboxylase 0.24 46
Ralstonia solanacearum UW163 0.42 UW163_RS18425 LysR family transcriptional regulator 0.25 UW163_RS09420 phosphoenolpyruvate carboxylase — —
Paraburkholderia graminis OAS925 0.42 ABIE53_005151 LysR family transcriptional activator of dmlA 0.23 ABIE53_001314 phosphoenolpyruvate carboxylase low > 113
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS17035 LysR family transcriptional regulator 0.25 RALBFv3_RS04250 phosphoenolpyruvate carboxylase low > 76
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS37825 LysR substrate-binding domain-containing protein 0.22 QEN71_RS24955 phosphoenolpyruvate carboxylase low > 153
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS10340 LysR family transcriptional regulator 0.25 ABZR87_RS16140 phosphoenolpyruvate carboxylase low > 80
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_01533 transcriptional regulator, LysR family 0.23 H281DRAFT_00197 Phosphoenolpyruvate carboxylase, type 1 low > 103
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_4411 Transcriptional regulator, LysR family 0.50 Pf1N1B4_3051 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) — —
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS15205 LysR family transcriptional regulator 0.23 HSERO_RS14670 phosphoenolpyruvate carboxylase low > 78
Pseudomonas simiae WCS417 0.34 PS417_09420 LysR family transcriptional regulator 0.50 PS417_06060 phosphoenolpyruvate carboxylase low > 88
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS10075 LysR family transcriptional regulator 0.50 PFLU_RS06130 phosphoenolpyruvate carboxylase low > 109
Pseudomonas fluorescens SBW25 0.33 PFLU_RS10075 LysR family transcriptional regulator 0.50 PFLU_RS06130 phosphoenolpyruvate carboxylase low > 109
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF4227 Putative LysR family transcriptional regulator 0.82 GFF2342 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.38 33
Pseudomonas sp. RS175 0.32 PFR28_01512 HTH-type transcriptional regulator DmlR 0.50 PFR28_00368 Phosphoenolpyruvate carboxylase low > 88
Klebsiella michiganensis M5al 0.32 BWI76_RS10685 LysR family transcriptional regulator 0.82 BWI76_RS00835 phosphoenolpyruvate carboxylase low > 92
Lysobacter sp. OAE881 0.32 ABIE51_RS06090 LysR family transcriptional regulator 0.24 ABIE51_RS18965 phosphoenolpyruvate carboxylase low > 62
Pseudomonas stutzeri RCH2 0.32 Psest_1182 Transcriptional regulator 0.50 Psest_1557 Phosphoenolpyruvate carboxylase 0.25 16
Serratia liquefaciens MT49 0.31 IAI46_21020 LysR family transcriptional regulator 0.85 IAI46_24525 phosphoenolpyruvate carboxylase low > 86
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_3594 Putative transcriptional regulator LYSR-type 0.50 PfGW456L13_4740 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 87
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS18110 LysR family transcriptional regulator 0.22 ABZR86_RS11555 phosphoenolpyruvate carboxylase low > 74
Escherichia coli ECRC101 0.30 MCAODC_18780 dmlR DNA-binding transcriptional regulator DmlR 0.82 MCAODC_04095 ppc phosphoenolpyruvate carboxylase low > 87
Escherichia coli ECRC62 0.30 BNILDI_15935 dmlR DNA-binding transcriptional regulator DmlR 0.82 BNILDI_05785 ppc phosphoenolpyruvate carboxylase low > 75
Escherichia coli ECRC99 0.30 KEDOAH_01480 dmlR DNA-binding transcriptional regulator DmlR 0.82 KEDOAH_14565 ppc phosphoenolpyruvate carboxylase — —
Escherichia coli ECRC98 0.30 JDDGAC_01205 dmlR DNA-binding transcriptional regulator DmlR 0.82 JDDGAC_17220 ppc phosphoenolpyruvate carboxylase — —
Escherichia coli ECOR38 0.30 HEPCGN_05020 dmlR DNA-binding transcriptional regulator DmlR 0.82 HEPCGN_12240 ppc phosphoenolpyruvate carboxylase low > 87
Escherichia coli ECRC100 0.30 OKFHMN_26630 dmlR DNA-binding transcriptional regulator DmlR 0.82 OKFHMN_13595 ppc phosphoenolpyruvate carboxylase low > 80
Escherichia coli ECRC102 0.30 NIAGMN_01435 dmlR DNA-binding transcriptional regulator DmlR 0.82 NIAGMN_11345 ppc phosphoenolpyruvate carboxylase — —
Escherichia coli ECOR27 0.30 NOLOHH_17150 dmlR DNA-binding transcriptional regulator DmlR 0.82 NOLOHH_05740 ppc phosphoenolpyruvate carboxylase — —
Escherichia coli BL21 0.30 ECD_01769 transcriptional activator of dmlA 0.82 ECD_03841 phosphoenolpyruvate carboxylase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_01934 HTH-type transcriptional regulator DmlR 0.82 OHPLBJKB_04094 Phosphoenolpyruvate carboxylase low > 73
Rahnella sp. WP5 0.30 EX31_RS18850 LysR family transcriptional regulator 0.83 EX31_RS14200 phosphoenolpyruvate carboxylase low > 89
Castellaniella sp019104865 MT123 0.30 ABCV34_RS12145 LysR family transcriptional regulator 0.22 ABCV34_RS14805 phosphoenolpyruvate carboxylase low > 48
Pseudomonas syringae pv. syringae B728a ΔmexB 0.30 Psyr_2397 transcriptional regulator, LysR family 0.50 Psyr_1318 Phosphoenolpyruvate carboxylase low > 86
Pseudomonas syringae pv. syringae B728a 0.30 Psyr_2397 transcriptional regulator, LysR family 0.50 Psyr_1318 Phosphoenolpyruvate carboxylase low > 86
Escherichia coli BW25113 0.30 b3060 ygiP predicted DNA-binding transcriptional regulator (NCBI) 0.82 b3956 ppc phosphoenolpyruvate carboxylase (NCBI) low > 76
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_19070 LysR family transcriptional regulator 0.66 CSW01_13390 phosphoenolpyruvate carboxylase low > 62
Escherichia fergusonii Becca 0.30 EFB2_00751 HTH-type transcriptional regulator DmlR 0.82 EFB2_04658 Phosphoenolpyruvate carboxylase low > 86
Escherichia coli Nissle 1917 0.30 ECOLIN_RS17670 L-tartrate utilization transcriptional activator TtdR 0.82 ECOLIN_RS22835 phosphoenolpyruvate carboxylase low > 55
Azospirillum sp. SherDot2 0.29 MPMX19_04441 HTH-type transcriptional regulator DmlR 0.26 MPMX19_06050 Phosphoenolpyruvate carboxylase low > 112
Enterobacter sp. TBS_079 0.29 MPMX20_03495 HTH-type transcriptional regulator DmlR 0.82 MPMX20_04524 Phosphoenolpyruvate carboxylase low > 85
Enterobacter asburiae PDN3 0.28 EX28DRAFT_1614 Transcriptional regulator 0.82 EX28DRAFT_4418 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) low > 76
Pectobacterium carotovorum WPP14 0.25 HER17_RS18920 LysR family transcriptional regulator 0.89 HER17_RS20655 phosphoenolpyruvate carboxylase low > 75
Shewanella amazonensis SB2B 0.24 Sama_3218 LysR family transcriptional regulator (RefSeq) 0.55 Sama_0254 phosphoenolpyruvate carboxylase (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.24 MIT1002_01798 D-malate degradation protein R 0.51 MIT1002_03491 Phosphoenolpyruvate carboxylase low > 70

Not shown: 3 genomes with orthologs for DZA65_RS04530 only; 26 genomes with orthologs for DZA65_RS00895 only