| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_09320 | | amino acid ABC transporter permease | 1.0 | CSW01_19235 | | glycogen debranching enzyme GlgX | 0.45 | 15 |
| Pseudomonas sp. S08-1 | 0.58 | OH686_21265 | | Arginine/ornithine ABC transporter, permease protein AotM | 0.34 | OH686_01305 | | glycogen debranching enzyme GlgX | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.57 | PfGW456L13_1966 | | Arginine/ornithine ABC transporter, permease protein AotM | 0.34 | PfGW456L13_3250 | | Glycogen debranching enzyme (EC 3.2.1.-) | low | > 87 |
| Pseudomonas aeruginosa MRSN321 | 0.55 | PFGADD_04241 | hisM | Histidine/lysine/arginine/ornithine transport system permease protein HisM | 0.34 | PFGADD_02957 | glgX | glycogen debranching protein GlgX | low | > 99 |
| Pseudomonas aeruginosa PUPa3 | 0.55 | NPBIFN_04300 | hisM | Histidine/lysine/arginine/ornithine transport system permease protein HisM | 0.34 | NPBIFN_02992 | glgX | glycogen debranching protein GlgX | low | > 101 |
| Pseudomonas aeruginosa PA14 | 0.55 | IKLFDK_03960 | | amino acid ABC transporter permease | 0.34 | IKLFDK_10570 | | glycogen debranching protein GlgX | low | > 98 |
| Pseudomonas fluorescens FW300-N2E3 | 0.55 | AO353_27980 | | amino acid ABC transporter permease | 0.34 | AO353_23750 | | glycogen debranching protein | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.55 | Pf1N1B4_4398 | | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) | 0.34 | Pf1N1B4_4682 | | Glycogen debranching enzyme (EC 3.2.1.-) | low | > 87 |
| Pseudomonas sp. BP01 | 0.54 | JOY50_RS00995 | | ABC transporter permease | 0.33 | JOY50_RS06735 | glgX | glycogen debranching protein GlgX | low | > 84 |
| Pseudomonas putida KT2440 | 0.54 | PP_4484 | | histidine / lysine / arginine / ornithine ABC transporter - permease subunit | 0.34 | PP_4055 | | Glycogen debranching enzyme | low | > 96 |
| Pseudomonas protegens RBAN4 | 0.54 | FABNJH_23340 | artM | ABC-type arginine/histidine transport system, permease component | 0.34 | FABNJH_14925 | glgX | glycogen debranching protein GlgX | — | — |
| Pseudomonas sp. SVBP6 | 0.53 | COO64_RS08405 | | ABC transporter permease | 0.33 | COO64_RS24790 | glgX | glycogen debranching protein GlgX | low | > 91 |
| Pseudomonas lactucae CFBP13502 | 0.53 | GEMAOFIL_04489 | | Octopine transport system permease protein OccM | 0.34 | GEMAOFIL_03190 | | Glycogen operon protein GlgX | low | > 96 |
| Pseudomonas syringae pv. syringae B728a | 0.51 | Psyr_3569 | | L-ornithine ABC transporter membrane protein / L-arginine ABC transporter membrane protein | 0.34 | Psyr_2997 | | Glycoside hydrolase, family 13, N-terminal:Alpha amylase, catalytic region | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.51 | Psyr_3569 | | L-ornithine ABC transporter membrane protein / L-arginine ABC transporter membrane protein | 0.34 | Psyr_2997 | | Glycoside hydrolase, family 13, N-terminal:Alpha amylase, catalytic region | low | > 86 |
| Pseudomonas sp. RS175 | 0.51 | PFR28_03286 | | Octopine transport system permease protein OccM | 0.34 | PFR28_02150 | | Glycogen operon protein GlgX | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.50 | AO356_18710 | | L-Arginine ABC transporter, permease component 1 (from data) | 0.34 | AO356_26000 | | glycogen debranching protein | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.50 | Pf6N2E2_5662 | | L-Arginine ABC transporter, permease protein AotM (from data) | 0.34 | Pf6N2E2_1073 | | Glycogen debranching enzyme (EC 3.2.1.-) | low | > 103 |
| Pseudomonas sp. DMC3 | 0.50 | GFF4884 | | Octopine transport system permease protein OccM | 0.34 | GFF3487 | | Glycogen operon protein GlgX | low | > 89 |
| Pseudomonas orientalis W4I3 | 0.49 | QF045_RS23840 | | ABC transporter permease | 0.34 | QF045_RS15290 | | glycogen debranching protein GlgX | low | > 93 |
| Pseudomonas fluorescens SBW25-INTG | 0.49 | PFLU_RS23340 | | ABC transporter permease | 0.34 | PFLU_RS16435 | | glycogen debranching protein GlgX | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.49 | PFLU_RS23340 | | ABC transporter permease | 0.34 | PFLU_RS16435 | | glycogen debranching protein GlgX | low | > 109 |
| Pseudomonas simiae WCS417 | 0.49 | PS417_21735 | | ABC transporter for L-Arginine, permease component 2 (from data) | 0.33 | PS417_14505 | | glycogen debranching protein | low | > 88 |
| Paraburkholderia sabiae LMG 24235 | 0.47 | QEN71_RS11340 | | ABC transporter permease | 0.35 | QEN71_RS10560 | | glycogen debranching protein GlgX | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.46 | H281DRAFT_00222 | | amino acid ABC transporter membrane protein 2, PAAT family | 0.35 | H281DRAFT_02812 | | glycogen operon protein | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.46 | BPHYT_RS05500 | | histidine/lysine/arginine/ornithine ABC transporter permease HisM | 0.34 | BPHYT_RS26285 | | glycogen debranching protein | low | > 109 |
| Pseudomonas stutzeri RCH2 | 0.45 | Psest_0136 | | amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family | 0.34 | Psest_2167 | | glycogen debranching enzyme GlgX | low | > 67 |
| Dickeya dadantii 3937 | 0.44 | DDA3937_RS14415 | | ABC transporter permease | 0.28 | DDA3937_RS19740 | | glycogen debranching protein GlgX | low | > 74 |
| Rahnella sp. WP5 | 0.44 | EX31_RS19550 | | ABC transporter permease | 0.33 | EX31_RS07170 | | glycogen debranching protein GlgX | low | > 89 |
| Paraburkholderia graminis OAS925 | 0.44 | ABIE53_001766 | | histidine transport system permease protein | 0.34 | ABIE53_005979 | | isoamylase | low | > 113 |
| Pantoea agglomerans CFBP13505 P0401 | 0.43 | PagCFBP13516_RS06485 | | ABC transporter permease | 0.33 | PagCFBP13516_RS10825 | glgX | glycogen debranching protein GlgX | low | > 80 |
| Pectobacterium carotovorum WPP14 | 0.43 | HER17_RS07040 | | ABC transporter permease | 0.29 | HER17_RS01490 | | glycogen debranching protein GlgX | low | > 75 |
| Dickeya dianthicola 67-19 | 0.43 | HGI48_RS14385 | | ABC transporter permease | 0.27 | HGI48_RS19850 | | glycogen debranching protein GlgX | low | > 71 |
| Dickeya dianthicola ME23 | 0.43 | DZA65_RS15315 | | ABC transporter permease | 0.27 | DZA65_RS20925 | | glycogen debranching protein GlgX | low | > 75 |
| Pantoea sp. MT58 | 0.43 | IAI47_06295 | | ABC transporter permease | 0.33 | IAI47_10665 | | glycogen debranching protein GlgX | low | > 76 |
| Rhodospirillum rubrum S1H | 0.42 | Rru_A2253 | | Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) | 0.33 | Rru_A1606 | | Glycogen debranching enzyme GlgX (NCBI) | low | > 58 |
| Escherichia fergusonii Becca | 0.42 | EFB2_01551 | | Histidine transport system permease protein HisM | 0.29 | EFB2_00388 | | Glycogen debranching enzyme | low | > 86 |
| Escherichia coli ECRC100 | 0.42 | OKFHMN_22740 | hisM | Histidine transport system permease protein HisM | 0.29 | OKFHMN_16890 | glgX | glycogen debranching protein GlgX | low | > 79 |
| Escherichia coli ECRC102 | 0.42 | NIAGMN_20510 | hisM | Histidine transport system permease protein HisM | 0.29 | NIAGMN_14660 | glgX | glycogen debranching protein GlgX | low | > 80 |
| Escherichia coli ECRC98 | 0.42 | JDDGAC_26700 | hisM | Histidine transport system permease protein HisM | 0.29 | JDDGAC_20520 | glgX | glycogen debranching protein GlgX | low | > 87 |
| Escherichia coli ECRC62 | 0.42 | BNILDI_13280 | hisM | Histidine transport system permease protein HisM | 0.29 | BNILDI_02835 | glgX | glycogen debranching protein GlgX | low | > 75 |
| Escherichia coli ECRC99 | 0.42 | KEDOAH_05455 | hisM | Histidine transport system permease protein HisM | 0.29 | KEDOAH_11250 | glgX | glycogen debranching protein GlgX | — | — |
| Escherichia coli BW25113 | 0.42 | b2307 | hisM | histidine/lysine/arginine/ornithine transporter subunit (NCBI) | 0.30 | b3431 | glgX | glycogen debranching enzyme (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.42 | NOLOHH_14360 | hisM | Histidine transport system permease protein HisM | 0.30 | NOLOHH_08680 | glgX | glycogen debranching protein GlgX | low | > 75 |
| Escherichia coli BL21 | 0.42 | ECD_02232 | | histidine ABC transporter permease | 0.29 | ECD_03283 | | glycogen debranching enzyme | low | > 61 |
| Escherichia coli ECOR38 | 0.42 | HEPCGN_21935 | hisM | Histidine transport system permease protein HisM | 0.29 | HEPCGN_15705 | glgX | glycogen debranching protein GlgX | low | > 88 |
| Agrobacterium fabrum C58 | 0.42 | Atu6025 | | ABC transporter, membrane spanning protein (nopaline) | 0.26 | Atu4073 | | glycogen debranching protein | low | > 89 |
| Escherichia coli ECRC101 | 0.42 | MCAODC_13780 | hisM | Histidine transport system permease protein HisM | 0.29 | MCAODC_07420 | glgX | glycogen debranching protein GlgX | low | > 87 |
| Escherichia coli Nissle 1917 | 0.42 | ECOLIN_RS13380 | | ABC transporter permease | 0.30 | ECOLIN_RS19635 | | glycogen debranching protein GlgX | low | > 55 |
| Serratia liquefaciens MT49 | 0.41 | IAI46_17790 | | ABC transporter permease | 0.29 | IAI46_23935 | | glycogen debranching protein GlgX | low | > 87 |
| Erwinia amylovora T8 | 0.41 | OLJFJH_11300 | | amino acid ABC transporter permease | 0.30 | OLJFJH_04255 | | glycogen debranching protein GlgX | low | > 58 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.41 | OHPLBJKB_01398 | | Histidine transport system permease protein HisM | 0.29 | OHPLBJKB_00270 | | Glycogen debranching enzyme | low | > 74 |
| Enterobacter sp. TBS_079 | 0.41 | MPMX20_03242 | | Histidine transport system permease protein HisM | 0.33 | MPMX20_02327 | | Glycogen operon protein GlgX | low | > 85 |
| Enterobacter asburiae PDN3 | 0.41 | EX28DRAFT_0297 | | amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family | 0.33 | EX28DRAFT_1157 | | glycogen debranching enzyme GlgX | low | > 76 |
| Klebsiella michiganensis M5al | 0.41 | BWI76_RS20325 | | histidine/lysine/arginine/ornithine ABC transporter permease HisM | 0.33 | BWI76_RS14140 | | glycogen debranching enzyme | low | > 92 |
| Klebsiella pneumoniae MKP103 | 0.41 | KDGMDA_27160 | | histidine ABC transporter permease HisM | 0.29 | KDGMDA_07095 | | glycogen debranching protein GlgX | low | > 94 |
| Klebsiella pneumoniae MRSN742743 | 0.41 | GJGHJB_01470 | hisM | histidine ABC transporter permease HisM | 0.29 | GJGHJB_00319 | glgX | glycogen debranching protein GlgX | low | > 83 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.40 | GFF1916 | | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) | 0.33 | GFF2548 | | Glycogen debranching enzyme (EC 3.2.1.-) | low | > 78 |
| Azospirillum sp. SherDot2 | 0.39 | MPMX19_03639 | | Octopine transport system permease protein OccM | 0.35 | MPMX19_04929 | | Glycogen operon protein GlgX | low | > 112 |
| Sinorhizobium meliloti 1021 | 0.34 | SMa0492 | | ABC transporter permease | 0.31 | SM_b21446 | | glycosyl hydrolase | low | > 103 |
| Variovorax sp. SCN45 | 0.28 | GFF6799 | | ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) | 0.36 | GFF770 | | Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196) | low | > 127 |
| Herbaspirillum seropedicae SmR1 | 0.27 | HSERO_RS21240 | | polar amino acid ABC transporter permease | 0.31 | HSERO_RS12505 | | glycogen debranching protein | low | > 78 |
| Variovorax sp. OAS795 | 0.27 | ABID97_RS21110 | | amino acid ABC transporter permease | 0.36 | ABID97_RS12155 | | glycogen debranching protein GlgX | low | > 91 |
| Shewanella sp. ANA-3 | 0.25 | Shewana3_0881 | | polar amino acid ABC transporter, inner membrane subunit (RefSeq) | 0.34 | Shewana3_2933 | | glycogen debranching enzyme GlgX (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.25 | Shew_3165 | | polar amino acid ABC transporter, inner membrane subunit (RefSeq) | 0.35 | Shew_1169 | | glycogen debranching enzyme GlgX (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.25 | SO1043 | | amino acid ABC transporter, permease protein (NCBI ptt file) | 0.33 | SO1495 | glgX | glycogen operon protein (NCBI ptt file) | low | > 76 |
Not shown: 11 genomes with orthologs for CSW01_09320 only; 18 genomes with orthologs for CSW01_19235 only