Conservation of cofitness between CSW01_07150 and CSW01_14665 in Vibrio cholerae E7946 ATCC 55056

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07150 spermidine/putrescine ABC transporter permease PotC 1.0 CSW01_14665 ribokinase 0.75 1
Enterobacter asburiae PDN3 0.79 EX28DRAFT_1806 ABC-type spermidine/putrescine transport system, permease component II 0.49 EX28DRAFT_4028 ribokinase low > 76
Escherichia coli ECRC101 0.76 MCAODC_22790 potC spermidine/putrescine ABC transporter permease PotC 0.52 MCAODC_05235 rbsK ribokinase 0.25 55
Escherichia coli ECOR38 0.76 HEPCGN_24065 potC spermidine/putrescine ABC transporter permease PotC 0.52 HEPCGN_13440 rbsK ribokinase low > 88
Escherichia fergusonii Becca 0.76 EFB2_02851 Inner membrane ABC transporter permease protein YdcV 0.52 EFB2_04881 Ribokinase low > 86
Escherichia coli BL21 0.76 ECD_01122 spermidine/putrescine ABC transporter permease 0.52 ECD_03638 ribokinase low > 61
Escherichia coli BW25113 0.76 b1124 potC spermidine/putrescine ABC transporter membrane protein (NCBI) 0.52 b3752 rbsK ribokinase (NCBI) low > 76
Escherichia coli ECRC99 0.76 KEDOAH_24325 potC spermidine/putrescine ABC transporter permease PotC 0.52 KEDOAH_13420 rbsK ribokinase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.76 OHPLBJKB_02544 Inner membrane ABC transporter permease protein YdcV 0.52 OHPLBJKB_04301 Ribokinase low > 74
Escherichia coli Nissle 1917 0.76 ECOLIN_RS06475 spermidine/putrescine ABC transporter permease PotC 0.52 ECOLIN_RS21570 ribokinase — —
Escherichia coli ECRC102 0.76 NIAGMN_24400 potC spermidine/putrescine ABC transporter permease PotC 0.52 NIAGMN_12485 rbsK ribokinase low > 80
Escherichia coli ECRC98 0.76 JDDGAC_07090 potC spermidine/putrescine ABC transporter permease PotC 0.52 JDDGAC_18350 rbsK ribokinase low > 87
Escherichia coli ECRC62 0.76 BNILDI_19110 potC spermidine/putrescine ABC transporter permease PotC 0.52 BNILDI_04660 rbsK ribokinase low > 75
Escherichia coli ECRC100 0.76 OKFHMN_03430 potC spermidine/putrescine ABC transporter permease PotC 0.52 OKFHMN_14730 rbsK ribokinase low > 79
Escherichia coli ECOR27 0.76 NOLOHH_20945 potC spermidine/putrescine ABC transporter permease PotC 0.52 NOLOHH_06865 rbsK ribokinase low > 76
Enterobacter sp. TBS_079 0.75 MPMX20_01805 Inner membrane ABC transporter permease protein YdcV 0.49 MPMX20_04615 Ribokinase low > 85
Klebsiella pneumoniae MKP103 0.75 KDGMDA_18850 spermidine/putrescine ABC transporter permease PotC 0.50 KDGMDA_08895 ribokinase low > 95
Klebsiella michiganensis M5al 0.74 BWI76_RS11245 spermidine/putrescine ABC transporter permease PotC 0.51 BWI76_RS00290 Ribokinase (EC 2.7.1.15) (from data) low > 92
Pectobacterium carotovorum WPP14 0.73 HER17_RS11670 spermidine/putrescine ABC transporter permease PotC 0.52 HER17_RS21530 ribokinase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF3405 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) 0.51 GFF1705 Ribokinase (EC 2.7.1.15) low > 78
Sinorhizobium meliloti 1021 0.46 SMc00773 putrescine ABC transporter permease 0.26 SMc01103 Ribokinase (EC 2.7.1.15) (from data) low > 103
Rhizobium sp. OAE497 0.46 ABIE40_RS03280 ABC transporter permease subunit 0.23 ABIE40_RS01880 ribokinase low > 107
Rhodopseudomonas palustris CGA009 0.43 TX73_021555 ABC transporter permease subunit 0.12 TX73_003165 sugar kinase low > 86
Azospirillum sp. SherDot2 0.42 MPMX19_04880 Inner membrane ABC transporter permease protein YdcV 0.31 MPMX19_02769 Ribokinase low > 112
Magnetospirillum magneticum AMB-1 0.42 AMB_RS13195 putrescine ABC transporter permease PotI 0.09 AMB_RS16380 carbohydrate kinase family protein — —
Rhodospirillum rubrum S1H 0.41 Rru_A1015 Binding-protein-dependent transport systems inner membrane component (NCBI) 0.32 Rru_A2297 Ribokinase (NCBI) low > 58
Bosea sp. OAE506 0.41 ABIE41_RS21635 ABC transporter permease subunit 0.22 ABIE41_RS03745 ribokinase low > 77
Agrobacterium fabrum C58 0.40 Atu0612 ABC transporter, membrane spanning protein 0.27 Atu4847 ribokinase low > 89
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.2212.1 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) 0.23 Xcc-8004.4302.1 Ribokinase (EC 2.7.1.15) low > 74
Phaeobacter inhibens DSM 17395 0.40 PGA1_c34450 putrescine transport system permease protein PotI 0.17 PGA1_c34980 putative pfkB family carbohydrate kinase low > 62
Caulobacter crescentus NA1000 0.39 CCNA_03236 spermidine/putrescine transport system permease protein potC 0.23 CCNA_01001 ribokinase low > 66
Caulobacter crescentus NA1000 Δfur 0.39 CCNA_03236 spermidine/putrescine transport system permease protein potC 0.23 CCNA_01001 ribokinase low > 67
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_2828 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) 0.35 PfGW456L13_3908 Ribokinase (EC 2.7.1.15) low > 87
Pseudomonas sp. RS175 0.38 PFR28_04291 Inner membrane ABC transporter permease protein YdcV 0.34 PFR28_02733 Ribokinase low > 88
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS07135 ABC transporter permease subunit 0.36 QEN71_RS35905 ribokinase low > 153
Pseudomonas aeruginosa PA14 0.37 IKLFDK_18425 spermidine/putrescine ABC transporter permease 0.39 IKLFDK_09520 ribokinase low > 100
Shewanella loihica PV-4 0.37 Shew_0976 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.42 Shew_0696 ribokinase (RefSeq) low > 60
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_05183 putrescine transport system permease protein 0.33 H281DRAFT_05229 ribokinase low > 103
Paraburkholderia graminis OAS925 0.37 ABIE53_002367 putrescine transport system permease protein 0.32 ABIE53_002321 ribokinase low > 113
Pseudomonas simiae WCS417 0.37 PS417_27105 spermidine/putrescine ABC transporter permease 0.36 PS417_18385 ribokinase — —
Shewanella oneidensis MR-1 0.37 SO1273 polyamine ABC transporter, permease protein (NCBI ptt file) 0.41 SO0810 rbsK ribokinase (NCBI ptt file) low > 76
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS23135 putrescine/spermidine ABC transporter permease 0.40 BPHYT_RS20695 ribokinase — —
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS28755 ABC transporter permease subunit 0.33 PFLU_RS20360 ribokinase low > 109
Pantoea sp. MT58 0.37 IAI47_13030 putrescine ABC transporter permease PotI 0.52 IAI47_00370 ribokinase low > 76
Pseudomonas fluorescens SBW25 0.37 PFLU_RS28755 ABC transporter permease subunit 0.33 PFLU_RS20360 ribokinase low > 109
Pseudomonas lactucae CFBP13502 0.37 GEMAOFIL_05561 Inner membrane ABC transporter permease protein YdcV 0.34 GEMAOFIL_03907 Ribokinase low > 93
Shewanella sp. ANA-3 0.37 Shewana3_3094 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.43 Shewana3_3477 ribokinase (RefSeq) low > 73
Pseudomonas putida KT2440 0.37 PP_5177 spermidine/putrescine ABC transporter - permease subunit 0.34 PP_2458 ribokinase low > 96
Pseudomonas sp. BP01 0.36 JOY50_RS22330 ABC transporter permease subunit 0.33 JOY50_RS04290 rbsK ribokinase low > 84
Pantoea agglomerans CFBP13505 P0401 0.36 PagCFBP13505_RS04300 putrescine ABC transporter permease PotI 0.51 PagCFBP13505_RS18965 ribokinase low > 74
Pseudomonas sp. DMC3 0.36 GFF283 Inner membrane ABC transporter permease protein YdcV 0.35 GFF901 Ribokinase — —
Serratia liquefaciens MT49 0.36 IAI46_08385 putrescine ABC transporter permease PotI 0.53 IAI46_25055 ribokinase low > 86
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_4517 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) 0.35 Pf6N2E2_165 Ribokinase (EC 2.7.1.15) low > 103
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_13175 spermidine/putrescine ABC transporter permease 0.35 AO356_00950 Ribokinase (EC 2.7.1.15) (from data) low > 104
Pseudomonas sp. SVBP6 0.36 COO64_RS00870 ABC transporter permease subunit 0.34 COO64_RS10345 rbsK ribokinase low > 93
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_08560 spermidine/putrescine ABC transporter permease 0.32 AO353_20835 Ribokinase (EC 2.7.1.15) (from data) low > 101
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_2263 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) 0.35 Pf1N1B4_6031 Ribokinase (EC 2.7.1.15) (from data) low > 87
Erwinia amylovora T8 0.36 OLJFJH_16295 putrescine ABC transporter permease PotI 0.51 OLJFJH_05410 ribokinase low > 58
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_4861 Binding-protein-dependent transport systems inner membrane component 0.37 Psyr_2155 Carbohydrate kinase, PfkB low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_4861 Binding-protein-dependent transport systems inner membrane component 0.37 Psyr_2155 Carbohydrate kinase, PfkB low > 86
Rahnella sp. WP5 0.35 EX31_RS09615 putrescine ABC transporter permease PotI 0.52 EX31_RS06190 ribokinase low > 89
Dickeya dianthicola 67-19 0.34 HGI48_RS09495 putrescine ABC transporter permease PotI 0.51 HGI48_RS21315 ribokinase low > 71
Dickeya dianthicola ME23 0.34 DZA65_RS09805 putrescine ABC transporter permease PotI 0.50 DZA65_RS22295 ribokinase low > 75
Dickeya dadantii 3937 0.34 DDA3937_RS09475 putrescine ABC transporter permease PotI 0.51 DDA3937_RS00050 ribokinase low > 74
Parabacteroides merdae CL09T00C40 0.31 HMPREF1078_RS08110 ABC transporter permease 0.41 HMPREF1078_RS08685 ribokinase low > 61
Bacteroides stercoris CC31F 0.31 HMPREF1181_RS12430 ABC transporter permease 0.42 HMPREF1181_RS02060 ribokinase low > 56
Bacteroides thetaiotaomicron VPI-5482 0.31 BT1289 putrescine transport system permease protein potI (NCBI ptt file) 0.36 BT2803 ribokinase (EC 2.7.1.15) (from data) low > 81
Bacteroides ovatus ATCC 8483 0.29 BACOVA_00084 ABC transporter, permease protein 0.42 BACOVA_02050 ribokinase low > 96
Variovorax sp. OAS795 0.28 ABID97_RS04045 ABC transporter permease 0.32 ABID97_RS24775 ribokinase — —
Variovorax sp. SCN45 0.28 GFF5033 ABC-type spermidine/putrescine transport system, permease component II 0.32 GFF2136 Ribokinase (EC 2.7.1.15) low > 127
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS05400 polyamine ABC transporter permease 0.34 HSERO_RS11500 Ribokinase (EC 2.7.1.15) (from data) low > 78
Dinoroseobacter shibae DFL-12 0.24 Dshi_1598 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.30 Dshi_1976 PfkB domain protein (RefSeq) low > 64
Acidovorax sp. GW101-3H11 0.23 Ac3H11_4183 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) 0.31 Ac3H11_1839 Ribokinase (EC 2.7.1.15) low > 79
Ralstonia solanacearum IBSBF1503 0.21 RALBFv3_RS01250 ABC transporter permease 0.37 RALBFv3_RS14235 ribokinase — —
Ralstonia solanacearum UW163 0.21 UW163_RS14560 ABC transporter permease 0.37 UW163_RS11700 ribokinase — —
Ralstonia solanacearum PSI07 0.21 RPSI07_RS16225 ABC transporter permease 0.37 RPSI07_RS19230 ribokinase 0.29 49
Ralstonia sp. UNC404CL21Col 0.21 ABZR87_RS12705 ABC transporter permease 0.37 ABZR87_RS09950 ribokinase low > 80
Ralstonia solanacearum GMI1000 0.21 RS_RS08745 ABC transporter permease 0.38 RS_RS05015 ribokinase low > 80

Not shown: 14 genomes with orthologs for CSW01_07150 only; 15 genomes with orthologs for CSW01_14665 only