Conservation of cofitness between CSW01_12705 and CSW01_13285 in Vibrio cholerae E7946 ATCC 55056

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12705 RNA polymerase-associated protein RapA 1.0 CSW01_13285 ribulose-phosphate 3-epimerase 0.59 17
Serratia liquefaciens MT49 0.67 IAI46_03275 RNA polymerase-associated protein RapA 0.76 IAI46_23685 ribulose-phosphate 3-epimerase low > 87
Dickeya dadantii 3937 0.65 DDA3937_RS18235 RNA polymerase-associated protein RapA 0.75 DDA3937_RS19530 ribulose-phosphate 3-epimerase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF183 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.76 GFF633 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) low > 78
Rahnella sp. WP5 0.65 EX31_RS03745 RNA polymerase-associated protein RapA 0.74 EX31_RS04705 ribulose-phosphate 3-epimerase — —
Escherichia coli ECRC98 0.65 JDDGAC_14395 rapA RNA polymerase-associated protein RapA 0.77 JDDGAC_20760 dam adenine-specific DNA-methyltransferase — —
Escherichia coli Nissle 1917 0.65 ECOLIN_RS00315 RNA polymerase-associated protein RapA 0.77 ECOLIN_RS19345 ribulose-phosphate 3-epimerase low > 55
Escherichia coli ECRC99 0.65 KEDOAH_17355 rapA RNA polymerase-associated protein RapA 0.77 KEDOAH_11010 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECOR27 0.65 NOLOHH_03145 rapA RNA polymerase-associated protein RapA 0.77 NOLOHH_08920 dam adenine-specific DNA-methyltransferase — —
Enterobacter sp. TBS_079 0.65 MPMX20_00753 RNA polymerase-associated protein RapA 0.77 MPMX20_04275 Ribulose-phosphate 3-epimerase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_03599 RNA polymerase-associated protein RapA 0.77 OHPLBJKB_00317 Ribulose-phosphate 3-epimerase — —
Escherichia coli ECRC101 0.65 MCAODC_01315 rapA RNA polymerase-associated protein RapA 0.77 MCAODC_07660 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC100 0.65 OKFHMN_10800 rapA RNA polymerase-associated protein RapA 0.77 OKFHMN_17130 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC102 0.65 NIAGMN_08650 rapA RNA polymerase-associated protein RapA 0.77 NIAGMN_14900 dam adenine-specific DNA-methyltransferase — —
Escherichia coli BL21 0.65 ECD_00061 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase 0.77 ECD_03238 D-ribulose-5-phosphate 3-epimerase low > 61
Escherichia coli BW25113 0.65 b0059 hepA ATP-dependent helicase HepA (NCBI) 0.77 b3386 rpe ribulose-phosphate 3-epimerase (NCBI) low > 76
Escherichia coli ECRC62 0.65 BNILDI_08460 rapA RNA polymerase-associated protein RapA 0.77 BNILDI_02600 dam adenine-specific DNA-methyltransferase — —
Klebsiella michiganensis M5al 0.65 BWI76_RS04570 RNA polymerase-associated protein RapA 0.77 BWI76_RS26070 ribulose-phosphate 3-epimerase — —
Dickeya dianthicola 67-19 0.65 HGI48_RS18170 RNA polymerase-associated protein RapA 0.76 HGI48_RS19660 ribulose-phosphate 3-epimerase — —
Enterobacter asburiae PDN3 0.65 EX28DRAFT_3651 Superfamily II DNA/RNA helicases, SNF2 family 0.78 EX28DRAFT_4156 ribulose-phosphate 3-epimerase low > 76
Klebsiella pneumoniae MKP103 0.65 KDGMDA_12795 RNA polymerase-associated protein RapA 0.78 KDGMDA_06895 ribulose-phosphate 3-epimerase — —
Escherichia coli ECOR38 0.64 HEPCGN_08790 rapA RNA polymerase-associated protein RapA 0.77 HEPCGN_15950 rpe ribulose-phosphate 3-epimerase low > 88
Escherichia fergusonii Becca 0.64 EFB2_03986 RNA polymerase-associated protein RapA 0.77 EFB2_00442 Ribulose-phosphate 3-epimerase — —
Dickeya dianthicola ME23 0.64 DZA65_RS19310 RNA polymerase-associated protein RapA 0.76 DZA65_RS20745 ribulose-phosphate 3-epimerase — —
Pantoea agglomerans CFBP13505 P0401 0.64 PagCFBP13505_RS12940 RNA polymerase-associated protein RapA 0.76 PagCFBP13505_RS21685 ribulose-phosphate 3-epimerase — —
Pantoea sp. MT58 0.64 IAI47_16055 RNA polymerase-associated protein RapA 0.76 IAI47_01910 ribulose-phosphate 3-epimerase — —
Pectobacterium carotovorum WPP14 0.64 HER17_RS02990 RNA polymerase-associated protein RapA 0.76 HER17_RS01795 ribulose-phosphate 3-epimerase low > 75
Erwinia amylovora T8 0.63 OLJFJH_01340 RNA polymerase-associated protein RapA 0.76 OLJFJH_04075 ribulose-phosphate 3-epimerase — —
Erwinia tracheiphila HP pepo 2.2 0.62 IJEDHG_06075 RNA polymerase-associated protein RapA 0.76 IJEDHG_12050 rpe ribulose-phosphate 3-epimerase — —
Erwinia tracheiphila SCR3 0.62 LU632_RS02805 rapA RNA polymerase-associated protein RapA 0.76 LU632_RS22850 rpe ribulose-phosphate 3-epimerase — —
Shewanella sp. ANA-3 0.61 Shewana3_0574 ATP-dependent helicase HepA (RefSeq) 0.78 Shewana3_3888 ribulose-5-phosphate 3-epimerase (RefSeq) — —
Shewanella oneidensis MR-1 0.61 SO0575 hepA RNA polymerase-associated protein HepA (NCBI ptt file) 0.78 SO0292 rpe ribulose-phosphate 3-epimerase (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.60 Sama_3131 ATP-dependent helicase HepA (RefSeq) 0.77 Sama_3362 ribulose-phosphate 3-epimerase (RefSeq) — —
Shewanella loihica PV-4 0.60 Shew_0457 ATP-dependent helicase HepA (RefSeq) 0.77 Shew_0219 ribulose-phosphate 3-epimerase (RefSeq) — —
Pseudomonas sp. S08-1 0.47 OH686_19955 RNA polymerase associated protein RapA 0.70 OH686_15115 ribulose-phosphate 3-epimerase — —
Pseudomonas sp. RS175 0.46 PFR28_00612 RNA polymerase-associated protein RapA 0.70 PFR28_04049 Ribulose-phosphate 3-epimerase — —
Pseudomonas sp. DMC3 0.46 GFF2193 RNA polymerase-associated protein RapA 0.69 GFF22 Ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_2845 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.71 Pf6N2E2_4820 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas lactucae CFBP13502 0.46 GEMAOFIL_01492 RNA polymerase-associated protein RapA 0.71 GEMAOFIL_05267 Ribulose-phosphate 3-epimerase low > 96
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_04975 RNA polymerase-associated protein RapA 0.70 AO356_14410 ribulose phosphate epimerase — —
Pseudomonas sp. SVBP6 0.46 COO64_RS17145 rapA RNA polymerase-associated protein RapA 0.71 COO64_RS22440 rpe ribulose-phosphate 3-epimerase low > 93
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_3842 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit 0.71 Psyr_4611 ribulose-5-phosphate 3-epimerase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_3842 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit 0.71 Psyr_4611 ribulose-5-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_17155 RNA polymerase-associated protein RapA 0.70 AO353_07240 ribulose phosphate epimerase — —
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_3224 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.71 Pf1N1B4_2543 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas segetis P6 0.46 ACVTMO_RS16290 rapA RNA polymerase-associated protein RapA 0.71 ACVTMO_RS04395 rpe ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_4599 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.70 PfGW456L13_1215 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas orientalis W4I3 0.46 QF045_RS09435 RNA polymerase-associated protein RapA 0.70 QF045_RS00135 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS06675 RNA polymerase-associated protein RapA 0.71 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens SBW25 0.46 PFLU_RS06675 RNA polymerase-associated protein RapA 0.71 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Pseudomonas stutzeri RCH2 0.46 Psest_1327 Superfamily II DNA/RNA helicases, SNF2 family 0.71 Psest_3652 ribulose-phosphate 3-epimerase — —
Pseudomonas aeruginosa MRSN321 0.46 DY961_RS00330 rapA;go_function=ATP RNA polymerase-associated protein RapA 0.70 DY961_RS23065 rpe;go_function=D-ribulose-phosphate ribulose-phosphate 3-epimerase — —
Pseudomonas aeruginosa PUPa3 0.46 DQ20_RS40690 rapA;go_function=ATP RNA polymerase-associated protein RapA 0.70 DQ20_RS36285 rpe;go_function=D-ribulose-phosphate ribulose-phosphate 3-epimerase — —
Pseudomonas aeruginosa PA14 0.46 IKLFDK_16965 RNA polymerase-associated protein RapA 0.70 IKLFDK_22375 ribulose-phosphate 3-epimerase — —
Pseudomonas putida KT2440 0.46 PP_1145 RNA polymerase-associated protein RapA 0.71 PP_0415 ribulose-5-phosphate 3-epimerase — —
Pseudomonas sp. BP01 0.46 JOY50_RS24235 rapA RNA polymerase-associated protein RapA 0.71 JOY50_RS18210 rpe ribulose-phosphate 3-epimerase — —
Pseudomonas simiae WCS417 0.45 PS417_06645 RNA polymerase-associated protein RapA 0.71 PS417_25735 ribulose-phosphate 3-epimerase — —
Alteromonas macleodii MIT1002 0.44 MIT1002_00659 RNA polymerase-associated protein RapA 0.74 MIT1002_00441 Ribulose-phosphate 3-epimerase — —
Marinobacter adhaerens HP15 0.41 HP15_3376 RNA polymerase-associated protein RapA 0.69 HP15_3286 ribulose-phosphate 3-epimerase-like protein — —
Acinetobacter baumannii LAC-4 0.38 RR41_RS05200 RNA polymerase-associated protein RapA 0.75 RR41_RS15745 ribulose-phosphate 3-epimerase — —
Acinetobacter radioresistens SK82 0.37 MPMX26_01027 RNA polymerase-associated protein RapA 0.73 MPMX26_02569 Ribulose-phosphate 3-epimerase — —
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_09865 rapA RNA polymerase-associated protein RapA 0.62 OKGIIK_12435 rpe ribulose-phosphate 3-epimerase — —
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS02885 RNA polymerase-associated protein RapA 0.63 LRK54_RS11390 ribulose-phosphate 3-epimerase — —
Rhodanobacter denitrificans MT42 0.31 LRK55_RS02635 RNA polymerase-associated protein RapA 0.64 LRK55_RS11120 ribulose-phosphate 3-epimerase — —
Rhodanobacter sp000427505 FW510-R12 0.31 LRK53_RS07105 RNA polymerase-associated protein RapA 0.66 LRK53_RS17105 ribulose-phosphate 3-epimerase low > 59
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS09245 RNA polymerase-associated protein RapA 0.71 ABZR86_RS12200 ribulose-phosphate 3-epimerase 0.49 16

Not shown: 0 genomes with orthologs for CSW01_12705 only; 57 genomes with orthologs for CSW01_13285 only