Conservation of cofitness between CSW01_09115 and CSW01_13285 in Vibrio cholerae E7946 ATCC 55056

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09115 sigma-54-dependent Fis family transcriptional regulator 1.0 CSW01_13285 ribulose-phosphate 3-epimerase 0.74 20
Shewanella sp. ANA-3 0.49 Shewana3_0251 Fis family GAF modulated sigma54 specific transcriptional regulator (RefSeq) 0.78 Shewana3_3888 ribulose-5-phosphate 3-epimerase (RefSeq) — —
Shewanella oneidensis MR-1 0.48 SO4479 sigma-54 dependent transcriptional regulator (NCBI ptt file) 0.78 SO0292 rpe ribulose-phosphate 3-epimerase (NCBI ptt file) — —
Shewanella loihica PV-4 0.48 Shew_3573 Fis family GAF modulated sigma54 specific transcriptional regulator (RefSeq) 0.77 Shew_0219 ribulose-phosphate 3-epimerase (RefSeq) — —
Shewanella amazonensis SB2B 0.42 Sama_3434 sigma-54 dependent transcriptional regulator (RefSeq) 0.77 Sama_3362 ribulose-phosphate 3-epimerase (RefSeq) — —
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_1736 Helix-turn-helix, Fis-type 0.71 Psyr_4611 ribulose-5-phosphate 3-epimerase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_1736 Helix-turn-helix, Fis-type 0.71 Psyr_4611 ribulose-5-phosphate 3-epimerase — —
Marinobacter adhaerens HP15 0.32 HP15_2165 sigma-54 dependent transcriptional regulator 0.69 HP15_3286 ribulose-phosphate 3-epimerase-like protein — —
Pseudomonas orientalis W4I3 0.32 QF045_RS17960 sigma-54-dependent Fis family transcriptional regulator 0.70 QF045_RS00135 ribulose-phosphate 3-epimerase — —
Pseudomonas sp. SVBP6 0.32 COO64_RS19080 sigma-54-dependent Fis family transcriptional regulator 0.71 COO64_RS22440 rpe ribulose-phosphate 3-epimerase low > 91
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_4007 sigma-54 dependent transcriptional regulator 0.71 Pf1N1B4_2543 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas segetis P6 0.32 ACVTMO_RS11180 sigma-54-dependent Fis family transcriptional regulator 0.71 ACVTMO_RS04395 rpe ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_21605 Fis family transcriptional regulator 0.70 AO356_14410 ribulose phosphate epimerase — —
Pseudomonas lactucae CFBP13502 0.32 GEMAOFIL_03531 Acetoin catabolism regulatory protein 0.71 GEMAOFIL_05267 Ribulose-phosphate 3-epimerase low > 96
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_2611 sigma-54 dependent transcriptional regulator 0.70 PfGW456L13_1215 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas sp. S08-1 0.31 OH686_03705 sigma-54-dependent transcriptional regulator 0.70 OH686_15115 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_102 sigma-54 dependent transcriptional regulator 0.71 Pf6N2E2_4820 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas sp. BP01 0.31 JOY50_RS25985 sigma-54-dependent Fis family transcriptional regulator 0.71 JOY50_RS18210 rpe ribulose-phosphate 3-epimerase — —
Pseudomonas simiae WCS417 0.31 PS417_16245 Fis family transcriptional regulator 0.71 PS417_25735 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS18275 sigma-54-dependent Fis family transcriptional regulator 0.71 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens SBW25 0.31 PFLU_RS18275 sigma-54-dependent Fis family transcriptional regulator 0.71 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Pseudomonas sp. DMC3 0.31 GFF1493 Acetoin catabolism regulatory protein 0.69 GFF22 Ribulose-phosphate 3-epimerase — —
Pseudomonas sp. RS175 0.31 PFR28_02793 Acetoin catabolism regulatory protein 0.70 PFR28_04049 Ribulose-phosphate 3-epimerase — —
Pseudomonas putida KT2440 0.30 PP_2259 putative sigma-54 dependent transcriptional regulator 0.71 PP_0415 ribulose-5-phosphate 3-epimerase — —
Acidovorax sp. GW101-3H11 0.30 Ac3H11_4391 Transcriptional activator of acetoin/glycerol metabolism 0.57 Ac3H11_757 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS11445 Fis family transcriptional regulator 0.68 RR42_RS18285 ribulose-phosphate 3-epimerase — —
Paraburkholderia sabiae LMG 24235 0.30 QEN71_RS34130 sigma-54-dependent Fis family transcriptional regulator 0.66 QEN71_RS27540 ribulose-phosphate 3-epimerase — —
Dechlorosoma suillum PS 0.30 Dsui_1463 transcriptional activator of acetoin/glycerol metabolism 0.66 Dsui_0221 ribulose-phosphate 3-epimerase — —
Ralstonia sp. UNC404CL21Col 0.29 ABZR87_RS15930 sigma-54-dependent Fis family transcriptional regulator 0.64 ABZR87_RS02130 ribulose-phosphate 3-epimerase — —
Rhodospirillum rubrum S1H 0.29 Rru_A0932 Sigma54 Specific Transcriptional Regulator containing GAF, and Fis DNA-binding domains (NCBI) 0.53 Rru_A2402 Ribulose-phosphate 3-epimerase (NCBI) — —
Methylophilus sp. DMC18 0.28 GFF2060 Acetoin catabolism regulatory protein 0.64 GFF2051 Ribulose-phosphate 3-epimerase — —
Variovorax sp. OAS795 0.28 ABID97_RS15005 sigma-54-dependent Fis family transcriptional regulator 0.59 ABID97_RS04905 ribulose-phosphate 3-epimerase — —
Paraburkholderia graminis OAS925 0.28 ABIE53_004383 transcriptional regulator of acetoin/glycerol metabolism 0.66 ABIE53_003638 ribulose-phosphate 3-epimerase low > 113
Burkholderia phytofirmans PsJN 0.28 BPHYT_RS28085 Fis family transcriptional regulator 0.67 BPHYT_RS17380 ribulose-phosphate 3-epimerase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.28 H281DRAFT_00325 GAF modulated sigma54 specific transcriptional regulator, Fis family 0.66 H281DRAFT_05717 ribulose-5-phosphate 3-epimerase low > 103
Rhodanobacter sp000427505 FW510-R12 0.27 LRK53_RS06205 sigma-54-dependent Fis family transcriptional regulator 0.66 LRK53_RS17105 ribulose-phosphate 3-epimerase low > 59
Pseudomonas stutzeri RCH2 0.26 Psest_2888 Transcriptional activator of acetoin/glycerol metabolism 0.71 Psest_3652 ribulose-phosphate 3-epimerase — —
Xanthobacter sp. DMC5 0.26 GFF2065 Acetoin catabolism regulatory protein 0.57 GFF2441 Ribulose-phosphate 3-epimerase — —
Pseudomonas aeruginosa PUPa3 0.26 NPBIFN_00941 eatR sigma-54-dependent transcriptional regulator EatR 0.70 NPBIFN_00621 rpe ribulose-phosphate 3-epimerase — —
Pseudomonas aeruginosa PA14 0.26 IKLFDK_20735 sigma-54-dependent transcriptional regulator EatR 0.70 IKLFDK_22375 ribulose-phosphate 3-epimerase — —
Pseudomonas aeruginosa MRSN321 0.26 PFGADD_00936 eatR sigma-54-dependent transcriptional regulator EatR 0.70 PFGADD_00617 rpe ribulose-phosphate 3-epimerase — —
Variovorax sp. SCN45 0.26 GFF6444 no description 0.59 GFF6246 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) low > 127
Ralstonia solanacearum PSI07 0.25 RPSI07_RS09460 sigma-54-dependent Fis family transcriptional regulator 0.64 RPSI07_RS10765 ribulose-phosphate 3-epimerase — —
Pseudomonas protegens RBAN4 0.25 FABNJH_27610 acoR Acetoin catabolism regulatory protein AcoR 0.70 FABNJH_28355 rpe ribulose-phosphate 3-epimerase — —
Rhodopseudomonas palustris CGA009 0.25 TX73_006200 sigma-54-dependent Fis family transcriptional regulator 0.39 TX73_019755 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_06555 Fis family transcriptional regulator 0.70 AO353_07240 ribulose phosphate epimerase — —

Not shown: 0 genomes with orthologs for CSW01_09115 only; 79 genomes with orthologs for CSW01_13285 only