| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_01445 | | lysine decarboxylase | 1.0 | CSW01_12815 | | RNA polymerase sigma-54 factor | 0.66 | 17 |
| Escherichia fergusonii Becca | 0.78 | EFB2_04451 | | Inducible lysine decarboxylase | 0.63 | EFB2_00621 | | RNA polymerase sigma-54 factor | — | — |
| Escherichia coli ECOR38 | 0.78 | HEPCGN_11110 | cadA | lysine decarboxylase CadA | 0.63 | HEPCGN_16815 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli Nissle 1917 | 0.78 | ECOLIN_RS23905 | | lysine decarboxylase CadA | 0.63 | ECOLIN_RS18425 | | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC101 | 0.78 | MCAODC_02985 | cadA | lysine decarboxylase CadA | 0.63 | MCAODC_08460 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECOR27 | 0.78 | NOLOHH_04740 | cadA | lysine decarboxylase CadA | 0.62 | NOLOHH_09740 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC98 | 0.78 | JDDGAC_16110 | cadA | lysine decarboxylase CadA | 0.63 | JDDGAC_21565 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC102 | 0.78 | NIAGMN_10320 | cadA | lysine decarboxylase CadA | 0.63 | NIAGMN_15700 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC62 | 0.78 | BNILDI_06750 | cadA | lysine decarboxylase CadA | 0.63 | BNILDI_01795 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli BW25113 | 0.78 | b4131 | cadA | lysine decarboxylase 1 (NCBI) | 0.62 | b3202 | rpoN | DNA-directed RNA polymerase subunit N (NCBI) | — | — |
| Escherichia coli ECRC100 | 0.78 | OKFHMN_12475 | cadA | lysine decarboxylase CadA | 0.63 | OKFHMN_17940 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli BL21 | 0.78 | ECD_04002 | | lysine decarboxylase, acid-inducible | 0.63 | ECD_03067 | | RNA polymerase, sigma 54 (sigma N) factor | low | > 61 |
| Escherichia coli ECRC99 | 0.78 | KEDOAH_15690 | cadA | lysine decarboxylase CadA | 0.63 | KEDOAH_10210 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.78 | OHPLBJKB_03912 | | Inducible lysine decarboxylase | 0.63 | OHPLBJKB_00498 | | RNA polymerase sigma-54 factor | — | — |
| Klebsiella pneumoniae MKP103 | 0.78 | KDGMDA_15475 | | lysine decarboxylase CadA | 0.63 | KDGMDA_06080 | | RNA polymerase factor sigma-54 | low | > 95 |
| Klebsiella michiganensis M5al | 0.78 | BWI76_RS07195 | | lysine decarboxylase CadA | 0.62 | BWI76_RS25265 | | RNA polymerase factor sigma-54 | — | — |
| Serratia liquefaciens MT49 | 0.77 | IAI46_20145 | | lysine decarboxylase CadA | 0.62 | IAI46_22470 | | RNA polymerase factor sigma-54 | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.77 | GFF2452 | | Lysine decarboxylase, inducible (EC 4.1.1.18) | 0.63 | GFF2946 | | RNA polymerase sigma-54 factor RpoN | low | > 78 |
| Enterobacter asburiae PDN3 | 0.71 | EX28DRAFT_3774 | | Arginine/lysine/ornithine decarboxylases | 0.62 | EX28DRAFT_3256 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Enterobacter sp. TBS_079 | 0.71 | MPMX20_00870 | | Constitutive lysine decarboxylase | 0.61 | MPMX20_04108 | | RNA polymerase sigma-54 factor | — | — |
| Rahnella sp. WP5 | 0.71 | EX31_RS12950 | | lysine decarboxylase LdcC | 0.63 | EX31_RS12400 | | RNA polymerase factor sigma-54 | low | > 89 |
| Pantoea sp. MT58 | 0.70 | IAI47_15445 | | lysine decarboxylase LdcC | 0.62 | IAI47_17185 | | RNA polymerase factor sigma-54 | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.70 | PagCFBP13505_RS13560 | | lysine decarboxylase LdcC | 0.62 | PagCFBP13505_RS09350 | | RNA polymerase factor sigma-54 | low | > 74 |
| Erwinia amylovora T8 | 0.70 | OLJFJH_00545 | | lysine decarboxylase LdcC | 0.61 | OLJFJH_07070 | | RNA polymerase factor sigma-54 | low | > 58 |
| Pseudomonas aeruginosa PA14 | 0.39 | IKLFDK_08840 | | lysine-specific pyridoxal 5'-phosphate-dependent carboxylase LdcA | 0.57 | IKLFDK_01770 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas sp. S08-1 | 0.39 | OH686_03560 | | Lysine decarboxylase, inducible | 0.56 | OH686_08540 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas segetis P6 | 0.38 | MPMX49_02802 | | Biodegradative arginine decarboxylase | 0.56 | MPMX49_03858 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas stutzeri RCH2 | 0.38 | Psest_2075 | | Arginine/lysine/ornithine decarboxylases | 0.56 | Psest_3313 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas lactucae CFBP13502 | 0.38 | GEMAOFIL_02693 | | Biodegradative arginine decarboxylase | 0.56 | GEMAOFIL_01075 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.38 | Pf1N1B4_4600 | | Lysine decarboxylase, inducible (EC 4.1.1.18) | 0.57 | Pf1N1B4_1080 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.38 | PfGW456L13_3336 | | Lysine decarboxylase, inducible (EC 4.1.1.18) | 0.57 | PfGW456L13_5014 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.38 | AO353_23560 | | lysine decarboxylase | 0.58 | AO353_05180 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens SBW25 | 0.38 | PFLU_RS12930 | | lysine decarboxylase | 0.58 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.38 | PFLU_RS12930 | | lysine decarboxylase | 0.58 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas simiae WCS417 | 0.38 | PS417_12240 | | lysine decarboxylase | 0.58 | PS417_04345 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas sp. SVBP6 | 0.37 | COO64_RS19270 | | Orn/Lys/Arg decarboxylase N-terminal domain-containing protein | 0.56 | COO64_RS04285 | | RNA polymerase factor sigma-54 | — | — |
| Rhizobium sp. OAE497 | 0.37 | ABIE40_RS23760 | | Orn/Lys/Arg decarboxylase N-terminal domain-containing protein | 0.28 | ABIE40_RS01860 | | RNA polymerase factor sigma-54 | low | > 107 |
| Pseudomonas putida KT2440 | 0.37 | PP_4140 | | lysine decarboxylase | 0.57 | PP_0952 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas sp. BP01 | 0.36 | JOY50_RS07070 | | Orn/Lys/Arg decarboxylase N-terminal domain-containing protein | 0.57 | JOY50_RS11130 | | RNA polymerase factor sigma-54 | — | — |
| Sinorhizobium meliloti 1021 | 0.36 | SMa0682 | | decarboxylase (lysine, ornithine, arginine) | 0.28 | SMc01139 | | RNA polymerase factor sigma-54 | low | > 103 |
| Ralstonia solanacearum PSI07 | 0.34 | RPSI07_RS13045 | | lysine decarboxylase | 0.39 | RPSI07_RS22130 | | RNA polymerase factor sigma-54 | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.34 | RR42_RS15940 | | lysine decarboxylase | 0.39 | RR42_RS02085 | | RNA polymerase subunit sigma-54 | — | — |
| Dechlorosoma suillum PS | 0.34 | Dsui_1245 | | arginine/lysine/ornithine decarboxylase | 0.41 | Dsui_0704 | | RNA polymerase sigma-54 factor | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.34 | RALBFv3_RS04325 | | lysine decarboxylase | 0.39 | RALBFv3_RS11170 | | RNA polymerase sigma-54 factor | — | — |
| Ralstonia solanacearum UW163 | 0.34 | UW163_RS09345 | | lysine decarboxylase | 0.39 | UW163_RS02410 | | RNA polymerase sigma-54 factor | — | — |
| Ralstonia solanacearum GMI1000 | 0.34 | RS_RS11875 | | lysine decarboxylase | 0.39 | RS_RS02020 | | RNA polymerase sigma-54 factor | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.34 | GFF4333 | | Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) | 0.32 | GFF3068 | | RNA polymerase sigma-54 factor RpoN | 0.46 | 76 |
| Herbaspirillum seropedicae SmR1 | 0.34 | HSERO_RS17280 | | lysine decarboxylase | 0.37 | HSERO_RS19855 | | RNA polymerase subunit sigma-54 | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.34 | QEN71_RS25000 | | arginine/lysine/ornithine decarboxylase | 0.39 | QEN71_RS01755 | | RNA polymerase factor sigma-54 | — | — |
| Ralstonia sp. UNC404CL21Col | 0.34 | ABZR87_RS16180 | | arginine/lysine/ornithine decarboxylase | 0.39 | ABZR87_RS07060 | | RNA polymerase factor sigma-54 | low | > 80 |
| Methylophilus sp. DMC18 | 0.34 | GFF1062 | | Biodegradative arginine decarboxylase | 0.38 | GFF2777 | | RNA polymerase sigma-54 factor | — | — |
| Acidovorax sp. GW101-3H11 | 0.33 | Ac3H11_2914 | | Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) | 0.34 | Ac3H11_727 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Burkholderia phytofirmans PsJN | 0.33 | BPHYT_RS04980 | | lysine decarboxylase | 0.39 | BPHYT_RS02905 | | RNA polymerase subunit sigma-54 | — | — |
| Paraburkholderia graminis OAS925 | 0.33 | ABIE53_001270 | | arginine decarboxylase | 0.39 | ABIE53_000718 | | RNA polymerase sigma-54 factor | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.33 | H281DRAFT_00160 | | ornithine decarboxylase | 0.39 | H281DRAFT_01927 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Castellaniella sp019104865 MT123 | 0.33 | ABCV34_RS08900 | | arginine/lysine/ornithine decarboxylase | 0.29 | ABCV34_RS12430 | | RNA polymerase factor sigma-54 | — | — |
| Variovorax sp. OAS795 | 0.33 | ABID97_RS16535 | | arginine/lysine/ornithine decarboxylase | 0.32 | ABID97_RS04780 | | RNA polymerase factor sigma-54 | — | — |
| Variovorax sp. SCN45 | 0.33 | GFF232 | | Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) | 0.32 | GFF6290 | | RNA polymerase sigma-54 factor RpoN | low | > 127 |
| Kangiella aquimarina DSM 16071 | 0.15 | B158DRAFT_0656 | | Arginine/lysine/ornithine decarboxylases | 0.34 | B158DRAFT_2080 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.32 | 11 |
Not shown: 0 genomes with orthologs for CSW01_01445 only; 55 genomes with orthologs for CSW01_12815 only