Conservation of cofitness between CSW01_02205 and CSW01_10265 in Vibrio cholerae E7946 ATCC 55056

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02205 ribonuclease E/G 1.0 CSW01_10265 c-type cytochrome biogenesis protein CcmF 0.78 9
Klebsiella pneumoniae MKP103 0.81 KDGMDA_06255 ribonuclease G 0.62 KDGMDA_23845 cytochrome c maturation protein CcmE low > 95
Escherichia coli ECRC101 0.80 MCAODC_08265 rng ribonuclease G 0.60 MCAODC_14355 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 87
Escherichia coli ECRC98 0.80 JDDGAC_21370 rng ribonuclease G 0.60 JDDGAC_27265 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 87
Escherichia coli BL21 0.80 ECD_03106 ribonuclease G 0.60 ECD_02123 heme lyase, CcmF subunit low > 61
Escherichia fergusonii Becca 0.80 EFB2_00584 Ribonuclease G 0.60 EFB2_01660 Cytochrome c-type biogenesis protein CcmF low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.80 OHPLBJKB_00458 Ribonuclease G 0.60 OHPLBJKB_01515 Cytochrome c-type biogenesis protein CcmF low > 74
Escherichia coli ECRC99 0.80 KEDOAH_10405 rng ribonuclease G 0.60 KEDOAH_04880 ccmF cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli Nissle 1917 0.80 ECOLIN_RS18605 ribonuclease G 0.60 ECOLIN_RS12835 cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli ECRC100 0.80 OKFHMN_17745 rng ribonuclease G 0.60 OKFHMN_23305 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 79
Escherichia coli ECRC62 0.80 BNILDI_01990 rng ribonuclease G 0.60 BNILDI_13800 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 75
Escherichia coli ECOR38 0.80 HEPCGN_16610 rng ribonuclease G 0.60 HEPCGN_22570 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 88
Escherichia coli BW25113 0.80 b3247 cafA bundles of cytoplasmic filaments (VIMSS) 0.60 b2196 ccmF heme lyase, CcmF subunit (NCBI) low > 76
Escherichia coli ECRC102 0.80 NIAGMN_15505 rng ribonuclease G 0.60 NIAGMN_21070 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 80
Escherichia coli ECOR27 0.80 NOLOHH_09530 rng ribonuclease G 0.60 NOLOHH_14880 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.80 GFF2138 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.58 GFF4877 Cytochrome c heme lyase subunit CcmF — —
Serratia liquefaciens MT49 0.80 IAI46_22700 ribonuclease G 0.65 IAI46_18085 heme lyase CcmF/NrfE family subunit low > 87
Pectobacterium carotovorum WPP14 0.79 HER17_RS20150 ribonuclease G 0.63 HER17_RS09055 heme lyase CcmF/NrfE family subunit low > 75
Rahnella sp. WP5 0.79 EX31_RS12255 ribonuclease G 0.67 EX31_RS19745 heme lyase CcmF/NrfE family subunit low > 89
Erwinia amylovora T8 0.79 OLJFJH_06930 ribonuclease G 0.63 OLJFJH_11100 heme lyase NrfEFG subunit NrfE low > 58
Pantoea agglomerans CFBP13505 P0401 0.78 PagCFBP13505_RS11050 ribonuclease G 0.64 PagCFBP13505_RS00045 heme lyase CcmF/NrfE family subunit low > 74
Pantoea sp. MT58 0.78 IAI47_02455 ribonuclease G 0.65 IAI47_06090 heme lyase CcmF/NrfE family subunit low > 76
Alteromonas macleodii MIT1002 0.74 MIT1002_00224 Ribonuclease G 0.56 MIT1002_00965 Cytochrome c-type biogenesis protein CcmF — —
Shewanella sp. ANA-3 0.74 Shewana3_3644 ribonuclease G (RefSeq) 0.50 Shewana3_0234 cytochrome c-type biogenesis protein CcmF (RefSeq) low > 73
Shewanella oneidensis MR-1 0.74 SO4094 cafA ribonuclease G (NCBI ptt file) 0.49 SO0266 ccmF-1 cytochrome c-type biogenesis protein CcmF (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.72 Sama_0471 ribonuclease G (RefSeq) 0.51 Sama_0248 cytochrome c-type biogenesis protein CcmF (RefSeq) low > 62
Shewanella loihica PV-4 0.72 Shew_0407 ribonuclease G (RefSeq) 0.51 Shew_0193 cytochrome c-type biogenesis protein CcmF (RefSeq) low > 60
Kangiella aquimarina DSM 16071 0.57 B158DRAFT_2069 ribonuclease, Rne/Rng family 0.54 B158DRAFT_1328 c-type cytochrome biogenesis protein CcmF low > 40
Marinobacter adhaerens HP15 0.57 HP15_2451 ribonuclease, Rne/Rng family 0.51 HP15_2281 cytochrome c assembly protein — —
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS04325 ribonuclease G 0.51 PFLU_RS08670 heme lyase CcmF/NrfE family subunit low > 109
Pseudomonas fluorescens SBW25 0.57 PFLU_RS04325 ribonuclease G 0.51 PFLU_RS08670 heme lyase CcmF/NrfE family subunit low > 109
Pseudomonas sp. DMC3 0.57 GFF1813 Ribonuclease G 0.51 GFF2490 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_07110 ribonuclease G 0.52 AO356_03635 cytochrome C biogenesis protein CcmF — —
Pseudomonas orientalis W4I3 0.57 QF045_RS07260 ribonuclease G 0.51 QF045_RS11430 heme lyase CcmF/NrfE family subunit — —
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_3283 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.51 Pf6N2E2_2555 Cytochrome c heme lyase subunit CcmF — —
Pseudomonas simiae WCS417 0.57 PS417_04270 ribonuclease G 0.52 PS417_08715 cytochrome C biogenesis protein CcmF — —
Dechlorosoma suillum PS 0.57 Dsui_0434 ribonuclease, Rne/Rng family 0.53 Dsui_1172 c-type cytochrome biogenesis protein CcmF — —
Pseudomonas aeruginosa MRSN321 0.57 DY961_RS24090 rng;go_function=RNA ribonuclease G 0.49 DY961_RS05510 heme lyase CcmF/NrfE family subunit — —
Pseudomonas aeruginosa PA14 0.57 IKLFDK_01695 ribonuclease G 0.49 IKLFDK_07040 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas aeruginosa PUPa3 0.57 DQ20_RS56550 rng;go_function=RNA ribonuclease G 0.49 DQ20_RS47280 heme lyase CcmF/NrfE family subunit — —
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_1095 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.51 Pf1N1B4_3644 Cytochrome c heme lyase subunit CcmF — —
Pseudomonas sp. RS175 0.57 PFR28_00158 Ribonuclease G 0.52 PFR28_00870 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas lactucae CFBP13502 0.57 GEMAOFIL_01059 Ribonuclease G 0.51 GEMAOFIL_01875 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas putida KT2440 0.57 PP_0937 endoribonuclease G (RNAse G) 0.50 PP_4322 holocytochrome c synthetase — —
Pseudomonas fluorescens GW456-L13 0.57 PfGW456L13_5029 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.53 PfGW456L13_4311 Cytochrome c heme lyase subunit CcmF — —
Pseudomonas sp. BP01 0.56 JOY50_RS11055 rng ribonuclease G 0.49 JOY50_RS00480 heme lyase CcmF/NrfE family subunit — —
Pseudomonas stutzeri RCH2 0.56 Psest_3323 ribonuclease, Rne/Rng family 0.51 Psest_1759 c-type cytochrome biogenesis protein CcmF — —
Pseudomonas fluorescens FW300-N2E3 0.56 AO353_05230 ribonuclease G 0.51 AO353_18875 cytochrome C biogenesis protein CcmF — —
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_4159 RNAse G 0.52 Psyr_3388 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_4159 RNAse G 0.52 Psyr_3388 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas sp. SVBP6 0.56 COO64_RS04210 rng ribonuclease G 0.50 COO64_RS25715 heme lyase CcmF/NrfE family subunit — —
Pseudomonas sp. S08-1 0.56 OH686_08595 Ribonuclease G 0.51 OH686_02635 cytochrome c-type biogenesis protein CcmF — —
Xanthomonas campestris pv. campestris strain 8004 0.55 Xcc-8004.1880.1 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.47 Xcc-8004.3190.1 Cytochrome c heme lyase subunit CcmF low > 74
Pseudomonas segetis P6 0.55 MPMX49_03868 Ribonuclease G 0.55 MPMX49_03107 Cytochrome c-type biogenesis protein CcmF — —
Lysobacter sp. OAE881 0.53 ABIE51_RS06785 ribonuclease G 0.48 ABIE51_RS08700 heme lyase CcmF/NrfE family subunit low > 62
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_10290 rng ribonuclease G 0.46 OKGIIK_08585 ccmF c-type cytochrome biogenesis protein CcmF — —
Rhodanobacter sp000427505 FW510-R12 0.52 LRK53_RS06540 ribonuclease G 0.45 LRK53_RS12730 heme lyase CcmF/NrfE family subunit — —
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS21730 ribonuclease G 0.48 ABZR86_RS06445 heme lyase CcmF/NrfE family subunit — —
Rhodanobacter denitrificans MT42 0.50 LRK55_RS03155 ribonuclease G 0.48 LRK55_RS15815 heme lyase CcmF/NrfE family subunit low > 63
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS03405 ribonuclease G 0.48 LRK54_RS16065 heme lyase CcmF/NrfE family subunit — —

Not shown: 34 genomes with orthologs for CSW01_02205 only; 19 genomes with orthologs for CSW01_10265 only