Conservation of cofitness between CSW01_02495 and CSW01_09215 in Vibrio cholerae E7946 ATCC 55056

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.0 CSW01_09215 tol-pal system-associated acyl-CoA thioesterase 0.43 11
Rahnella sp. WP5 0.73 EX31_RS02660 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.47 EX31_RS23475 tol-pal system-associated acyl-CoA thioesterase low > 89
Klebsiella michiganensis M5al 0.72 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.45 BWI76_RS08515 acyl-CoA thioesterase YbgC low > 92
Escherichia coli ECRC99 0.72 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.46 KEDOAH_21140 ybgC tol-pal system-associated acyl-CoA thioesterase — —
Escherichia coli ECRC62 0.72 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.46 BNILDI_21255 ybgC tol-pal system-associated acyl-CoA thioesterase low > 75
Escherichia coli ECOR27 0.72 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.46 NOLOHH_23260 ybgC tol-pal system-associated acyl-CoA thioesterase low > 76
Escherichia coli ECRC102 0.72 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.46 NIAGMN_04875 ybgC tol-pal system-associated acyl-CoA thioesterase low > 80
Escherichia coli BW25113 0.72 b2946 yggJ orf, hypothetical protein (VIMSS) 0.46 b0736 ybgC predicted acyl-CoA thioesterase (NCBI) low > 76
Escherichia coli ECRC101 0.72 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.46 MCAODC_26045 ybgC tol-pal system-associated acyl-CoA thioesterase low > 87
Escherichia coli Nissle 1917 0.72 ECOLIN_RS16390 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.46 ECOLIN_RS03920 tol-pal system-associated acyl-CoA thioesterase — —
Escherichia coli ECRC98 0.72 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.46 JDDGAC_10480 ybgC tol-pal system-associated acyl-CoA thioesterase low > 87
Escherichia coli BL21 0.72 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent 0.46 ECD_00696 acyl-CoA thioester hydrolase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E 0.46 OHPLBJKB_02977 Acyl-CoA thioester hydrolase YbgC low > 74
Escherichia coli ECRC100 0.72 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.46 OKFHMN_06825 ybgC tol-pal system-associated acyl-CoA thioesterase low > 79
Escherichia fergusonii Becca 0.72 EFB2_00956 Ribosomal RNA small subunit methyltransferase E 0.46 EFB2_03370 Acyl-CoA thioester hydrolase YbgC low > 86
Escherichia coli ECOR38 0.72 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E 0.46 HEPCGN_01445 ybgC tol-pal system-associated acyl-CoA thioesterase low > 88
Klebsiella pneumoniae MKP103 0.71 KDGMDA_04585 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.46 KDGMDA_16770 tol-pal system-associated acyl-CoA thioesterase low > 95
Pantoea sp. MT58 0.70 IAI47_03620 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.48 IAI47_13705 tol-pal system-associated acyl-CoA thioesterase low > 76
Enterobacter asburiae PDN3 0.70 EX28DRAFT_2984 RNA methyltransferase, RsmE family 0.46 EX28DRAFT_2255 tol-pal system-associated acyl-CoA thioesterase low > 76
Pantoea agglomerans CFBP13505 P0401 0.70 PagCFBP13505_RS16075 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.49 PagCFBP13505_RS03600 tol-pal system-associated acyl-CoA thioesterase low > 74
Serratia liquefaciens MT49 0.70 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.49 IAI46_06315 tol-pal system-associated acyl-CoA thioesterase low > 87
Enterobacter sp. TBS_079 0.70 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E 0.46 MPMX20_01365 Acyl-CoA thioester hydrolase YbgC low > 85
Erwinia tracheiphila HP pepo 2.2 0.69 IJEDHG_03425 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.45 IJEDHG_02105 ybgC tol-pal system-associated acyl-CoA thioesterase — —
Erwinia amylovora T8 0.69 OLJFJH_08575 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.45 OLJFJH_16930 tol-pal system-associated acyl-CoA thioesterase low > 58
Erwinia tracheiphila SCR3 0.69 LU632_RS05485 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.45 LU632_RS16050 ybgC tol-pal system-associated acyl-CoA thioesterase low > 73
Dickeya dadantii 3937 0.69 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.46 DDA3937_RS06495 tol-pal system-associated acyl-CoA thioesterase low > 74
Dickeya dianthicola ME23 0.67 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.45 DZA65_RS06890 tol-pal system-associated acyl-CoA thioesterase low > 75
Dickeya dianthicola 67-19 0.67 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.44 HGI48_RS06540 tol-pal system-associated acyl-CoA thioesterase low > 71
Pectobacterium carotovorum WPP14 0.67 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.47 HER17_RS14885 tol-pal system-associated acyl-CoA thioesterase low > 75
Shewanella sp. ANA-3 0.66 Shewana3_3444 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.46 Shewana3_2535 4-hydroxybenzoyl-CoA thioesterase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.65 SO0832 conserved hypothetical protein TIGR00046 (NCBI ptt file) 0.45 SO2752 conserved hypothetical protein TIGR00051 (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.64 Sama_0575 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.43 Sama_2090 hypothetical protein (RefSeq) low > 62
Shewanella loihica PV-4 0.63 Shew_3224 hypothetical protein (RefSeq) 0.45 Shew_1523 4-hydroxybenzoyl-CoA thioesterase (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.48 MIT1002_03054 Ribosomal RNA small subunit methyltransferase E 0.41 MIT1002_01334 Acyl-CoA thioester hydrolase YbgC low > 70
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_0180 RNA methyltransferase, RsmE family 0.40 B158DRAFT_1137 tol-pal system-associated acyl-CoA thioesterase — —
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_08050 16S rRNA methyltransferase 0.32 AO353_03575 4-hydroxybenzoyl-CoA thioesterase low > 101
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_13565 16S rRNA methyltransferase 0.32 AO356_18030 4-hydroxybenzoyl-CoA thioesterase low > 104
Pseudomonas simiae WCS417 0.43 PS417_26545 16S rRNA methyltransferase 0.33 PS417_22440 4-hydroxybenzoyl-CoA thioesterase — —
Pseudomonas sp. RS175 0.43 PFR28_04209 Ribosomal RNA small subunit methyltransferase E 0.33 PFR28_03411 Acyl-CoA thioester hydrolase YbgC 0.24 70
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_4630 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.32 Pf6N2E2_5538 4-hydroxybenzoyl-CoA thioesterase family active site low > 103
Pseudomonas orientalis W4I3 0.43 QF045_RS00940 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.33 QF045_RS24605 tol-pal system-associated acyl-CoA thioesterase low > 93
Pseudomonas lactucae CFBP13502 0.43 GEMAOFIL_05440 Ribosomal RNA small subunit methyltransferase E 0.34 GEMAOFIL_04640 Acyl-CoA thioester hydrolase YbgC low > 96
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.33 PFLU_RS24080 tol-pal system-associated acyl-CoA thioesterase low > 109
Pseudomonas fluorescens SBW25 0.43 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.33 PFLU_RS24080 tol-pal system-associated acyl-CoA thioesterase low > 109
Pseudomonas sp. DMC3 0.43 GFF180 Ribosomal RNA small subunit methyltransferase E 0.33 GFF5183 Acyl-CoA thioester hydrolase YbgC low > 89
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.34 Psyr_1411 4-hydroxybenzoyl-CoA thioesterase low > 86
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2376 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.32 Pf1N1B4_636 4-hydroxybenzoyl-CoA thioesterase family active site — —
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.34 Psyr_1411 4-hydroxybenzoyl-CoA thioesterase low > 86
Methylophilus sp. DMC18 0.41 GFF2490 Ribosomal RNA small subunit methyltransferase E 0.39 GFF2328 Acyl-CoA thioesterase YbgC low > 43
Acinetobacter radioresistens SK82 0.37 MPMX26_01001 Ribosomal RNA small subunit methyltransferase E 0.29 MPMX26_02190 Acyl-CoA thioesterase YbgC — —
Lysobacter sp. OAE881 0.36 ABIE51_RS05260 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.38 ABIE51_RS05060 tol-pal system-associated acyl-CoA thioesterase low > 62
Dechlorosoma suillum PS 0.35 Dsui_1568 RNA methyltransferase, RsmE family 0.35 Dsui_0483 tol-pal system-associated acyl-CoA thioesterase — —
Ralstonia solanacearum PSI07 0.34 RPSI07_RS11365 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.39 RPSI07_RS20320 tol-pal system-associated acyl-CoA thioesterase low > 81
Acinetobacter baumannii LAC-4 0.34 RR41_RS05720 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.28 RR41_RS04675 tol-pal system-associated acyl-CoA thioesterase — —
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS27020 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.43 QEN71_RS26245 tol-pal system-associated acyl-CoA thioesterase low > 153
Ralstonia solanacearum GMI1000 0.32 RS_RS13825 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.38 RS_RS03680 tol-pal system-associated acyl-CoA thioesterase low > 80
Variovorax sp. SCN45 0.28 GFF3255 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) 0.31 GFF574 Tol-Pal system-associated acyl-CoA thioesterase low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF2462 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.35 GFF5172 4-hydroxybenzoyl-CoA thioesterase family active site 0.58 19
Castellaniella sp019104865 MT123 0.26 ABCV34_RS15445 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.33 ABCV34_RS09830 tol-pal system-associated acyl-CoA thioesterase low > 48
Azospirillum sp. SherDot2 0.19 MPMX19_00577 Ribosomal RNA small subunit methyltransferase E 0.35 MPMX19_00699 Acyl-CoA thioesterase YbgC low > 112
Pontibacter actiniarum KMM 6156, DSM 19842 0.19 CA264_05265 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.20 CA264_13075 thioesterase low > 74
Dinoroseobacter shibae DFL-12 0.18 Dshi_3099 protein of unknown function DUF558 (RefSeq) 0.30 Dshi_1107 Pol-Pal system-associated acyl-CoA thioesterase (RefSeq) low > 64
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_3055 RNA methyltransferase, RsmE family 0.19 Echvi_0373 acyl-CoA thioester hydrolase, YbgC/YbaW family low > 79
Bosea sp. OAE506 0.17 ABIE41_RS23100 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.34 ABIE41_RS09500 tol-pal system-associated acyl-CoA thioesterase — —
Rhodopseudomonas palustris CGA009 0.16 TX73_005910 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.37 TX73_005670 tol-pal system-associated acyl-CoA thioesterase low > 86
Rhodospirillum rubrum S1H 0.11 Rru_A0571 hypothetical protein (NCBI) 0.34 Rru_A1090 4-hydroxybenzoyl-CoA thioesterase (NCBI) — —

Not shown: 52 genomes with orthologs for CSW01_02495 only; 1 genomes with orthologs for CSW01_09215 only