| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_10815 | | Cys-tRNA(Pro) deacylase | 1.0 | CSW01_06455 | | DNA-binding response regulator | 0.44 | 15 |
| Pseudomonas stutzeri RCH2 | 0.55 | Psest_1454 | | ybaK/ebsC protein | 0.31 | Psest_0662 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | low | > 67 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.53 | Psyr_3903 | | Conserved hypothetical protein 11 | 0.30 | Psyr_1940 | | regulatory protein, LuxR:Response regulator receiver | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.53 | Psyr_3903 | | Conserved hypothetical protein 11 | 0.30 | Psyr_1940 | | regulatory protein, LuxR:Response regulator receiver | — | — |
| Pseudomonas putida KT2440 | 0.53 | PP_1077 | | Cys-tRNAPro deacylase | 0.30 | PP_2126 | | DNA-binding response regulator, LuxR family | low | > 96 |
| Pseudomonas lactucae CFBP13502 | 0.53 | GEMAOFIL_01304 | | Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK | 0.30 | GEMAOFIL_03209 | | Transcriptional regulatory protein LnrK | low | > 96 |
| Pseudomonas sp. BP01 | 0.53 | JOY50_RS14880 | ybaK | Cys-tRNA(Pro) deacylase | 0.29 | JOY50_RS24990 | | response regulator transcription factor | low | > 84 |
| Pseudomonas fluorescens FW300-N1B4 | 0.53 | Pf1N1B4_765 | | Cys-tRNA(Pro) deacylase YbaK | 0.38 | Pf1N1B4_4833 | | DNA-binding response regulator, LuxR family | low | > 87 |
| Desulfovibrio vulgaris Miyazaki F | 0.52 | DvMF_2065 | | ybaK/ebsC protein (RefSeq) | 0.35 | DvMF_1021 | | two component transcriptional regulator, LuxR family (RefSeq) | low | > 51 |
| Pseudomonas fluorescens FW300-N2C3 | 0.52 | AO356_18260 | | hypothetical protein | 0.36 | AO356_25670 | | regulator | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.52 | AO353_04170 | | hypothetical protein | 0.36 | AO353_25245 | | regulator | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.52 | Pf6N2E2_5576 | | Cys-tRNA(Pro) deacylase YbaK | 0.38 | Pf6N2E2_1296 | | DNA-binding response regulator, LuxR family | low | > 103 |
| Pseudomonas sp. RS175 | 0.51 | PFR28_03366 | | Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK | 0.38 | PFR28_01618 | | Oxygen regulatory protein NreC | low | > 88 |
| Pseudomonas sp. SVBP6 | 0.51 | COO64_RS16810 | ybaK | Cys-tRNA(Pro) deacylase | 0.38 | COO64_RS09150 | | response regulator transcription factor | low | > 93 |
| Pseudomonas fluorescens SBW25 | 0.51 | PFLU_RS05670 | | Cys-tRNA(Pro) deacylase | 0.29 | PFLU_RS14300 | | response regulator transcription factor | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.51 | PFLU_RS05670 | | Cys-tRNA(Pro) deacylase | 0.29 | PFLU_RS14300 | | response regulator transcription factor | low | > 109 |
| Shewanella amazonensis SB2B | 0.49 | Sama_0531 | | YbaK/EbsC protein (RefSeq) | 0.30 | Sama_1873 | | response regulator receiver protein (RefSeq) | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.49 | MIT1002_01641 | | Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK | 0.33 | MIT1002_03526 | | Nitrogen regulation protein C | low | > 70 |
| Caulobacter crescentus NA1000 Δfur | 0.37 | CCNA_01014 | | cysteinyl-tRNA(Pro) deacylase | 0.28 | CCNA_01208 | | two-component response regulator | low | > 67 |
| Caulobacter crescentus NA1000 | 0.37 | CCNA_01014 | | cysteinyl-tRNA(Pro) deacylase | 0.28 | CCNA_01208 | | two-component response regulator | low | > 66 |
| Rhizobium sp. OAE497 | 0.35 | ABIE40_RS01230 | | Cys-tRNA(Pro) deacylase | 0.27 | ABIE40_RS22645 | | response regulator transcription factor | low | > 107 |
| Bacteroides ovatus ATCC 8483 | 0.34 | BACOVA_03702 | | YbaK/EbsC protein | 0.18 | BACOVA_01281 | | transcriptional regulator, LuxR family | low | > 96 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.33 | BT0579 | | putative transcription regulator (NCBI ptt file) | 0.17 | BT0156 | | transcriptional regulator (NCBI ptt file) | — | — |
| Agrobacterium fabrum C58 | 0.32 | Atu0275 | | hypothetical protein | 0.40 | Atu5267 | | two component response regulator | — | — |
| Magnetospirillum magneticum AMB-1 | 0.32 | AMB_RS00065 | | Cys-tRNA(Pro) deacylase | 0.34 | AMB_RS06830 | | DNA-binding response regulator | low | > 64 |
| Bifidobacterium breve UCC2003 | 0.31 | BBR_RS16795 | | Cys-tRNA(Pro) deacylase | 0.26 | BBR_RS14610 | | DNA-binding response regulator | low | > 34 |
| Bacteroides stercoris CC31F | 0.31 | HMPREF1181_RS15180 | | Cys-tRNA(Pro) deacylase | 0.27 | HMPREF1181_RS04510 | | response regulator transcription factor | low | > 56 |
| Rhodopseudomonas palustris CGA009 | 0.29 | TX73_022270 | | Cys-tRNA(Pro) deacylase | 0.29 | TX73_007655 | | response regulator transcription factor | low | > 86 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.29 | Xcc-8004.4192.1 | | Cys-tRNA(Pro) deacylase YbaK | 0.31 | Xcc-8004.3859.1 | | Two-component system regulatory protein | low | > 74 |
| Dechlorosoma suillum PS | 0.27 | Dsui_1216 | | ybaK/ebsC protein | 0.31 | Dsui_1862 | | response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | low | > 51 |
| Variovorax sp. OAS795 | 0.26 | ABID97_RS21705 | | aminoacyl-tRNA deacylase | 0.37 | ABID97_RS22515 | | response regulator transcription factor | low | > 91 |
| Ralstonia solanacearum GMI1000 | 0.25 | RS_RS12760 | | Cys-tRNA(Pro) deacylase | 0.38 | RS_RS00100 | | DNA-binding response regulator | low | > 80 |
| Burkholderia phytofirmans PsJN | 0.25 | BPHYT_RS15940 | | membrane protein | 0.35 | BPHYT_RS22230 | | LuxR family transcriptional regulator | low | > 109 |
| Ralstonia solanacearum UW163 | 0.25 | UW163_RS08480 | | Cys-tRNA(Pro) deacylase | 0.38 | UW163_RS04080 | | DNA-binding response regulator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.25 | RALBFv3_RS05145 | | Cys-tRNA(Pro) deacylase | 0.38 | RALBFv3_RS09500 | | DNA-binding response regulator | low | > 76 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.25 | H281DRAFT_04124 | | Cys-tRNA(Pro) deacylase | 0.39 | H281DRAFT_03153 | | two component transcriptional regulator, LuxR family | low | > 103 |
| Ralstonia solanacearum PSI07 | 0.25 | RPSI07_RS12155 | | Cys-tRNA(Pro) deacylase | 0.38 | RPSI07_RS23850 | | DNA-binding response regulator | low | > 81 |
| Cupriavidus basilensis FW507-4G11 | 0.24 | RR42_RS03340 | | membrane protein | 0.33 | RR42_RS20525 | | LuxR family transcriptional regulator | low | > 128 |
| Ralstonia sp. UNC404CL21Col | 0.24 | ABZR87_RS00800 | | Cys-tRNA(Pro) deacylase | 0.38 | ABZR87_RS05230 | | response regulator transcription factor | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.24 | QEN71_RS02765 | | Cys-tRNA(Pro) deacylase | 0.39 | QEN71_RS32890 | | response regulator transcription factor | low | > 153 |
| Variovorax sp. SCN45 | 0.24 | GFF3103 | | Cys-tRNA(Pro) deacylase YbaK | 0.35 | GFF5818 | | Two-component transcriptional response regulator, NarL/FixJ family | low | > 127 |
| Herbaspirillum seropedicae SmR1 | 0.23 | HSERO_RS04270 | | membrane protein | 0.34 | HSERO_RS12850 | | LuxR family transcriptional regulator | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.23 | GFF288 | | Transcriptional regulator | 0.32 | GFF3272 | | DNA-binding response regulator, LuxR family | — | — |
Not shown: 55 genomes with orthologs for CSW01_10815 only; 19 genomes with orthologs for CSW01_06455 only