Conservation of cofitness between CSW01_00245 and CSW01_05330 in Vibrio cholerae E7946 ATCC 55056

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00245 DNA-protecting protein DprA 1.0 CSW01_05330 fatty acid oxidation complex subunit alpha FadJ 0.50 15
Pectobacterium carotovorum WPP14 0.39 HER17_RS02230 DNA-protecting protein DprA 0.55 HER17_RS06890 fatty acid oxidation complex subunit alpha FadJ low > 75
Dickeya dianthicola ME23 0.37 DZA65_RS20335 DNA-protecting protein DprA 0.51 DZA65_RS15485 fatty acid oxidation complex subunit alpha FadJ low > 75
Dickeya dadantii 3937 0.37 DDA3937_RS19120 DNA-protecting protein DprA 0.51 DDA3937_RS14600 fatty acid oxidation complex subunit alpha FadJ low > 74
Dickeya dianthicola 67-19 0.37 HGI48_RS19210 DNA-protecting protein DprA 0.51 HGI48_RS14550 fatty acid oxidation complex subunit alpha FadJ low > 71
Shewanella amazonensis SB2B 0.37 Sama_0045 DNA processing protein DprA, putative (RefSeq) 0.54 Sama_2167 fadJ multifunctional fatty acid oxidation complex subunit alpha (RefSeq) low > 62
Pantoea sp. MT58 0.37 IAI47_02295 DNA-protecting protein DprA 0.56 IAI47_06130 fatty acid oxidation complex subunit alpha FadJ low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF2393 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake 0.54 GFF1954 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) low > 78
Enterobacter asburiae PDN3 0.36 EX28DRAFT_0042 DNA protecting protein DprA 0.55 EX28DRAFT_0271 fatty oxidation complex, alpha subunit FadJ low > 76
Serratia liquefaciens MT49 0.36 IAI46_23260 DNA-protecting protein DprA 0.55 IAI46_18045 fatty acid oxidation complex subunit alpha FadJ low > 87
Rahnella sp. WP5 0.36 EX31_RS15970 DNA-protecting protein DprA 0.56 EX31_RS19705 fatty acid oxidation complex subunit alpha FadJ low > 89
Escherichia coli ECRC99 0.36 KEDOAH_10605 dprA DNA-protecting protein DprA 0.54 KEDOAH_05635 fadJ fatty acid oxidation complex subunit alpha FadJ — —
Shewanella oneidensis MR-1 0.36 SO0034 DNA processing protein DprA, putative (NCBI ptt file) 0.52 SO3088 fatty oxidation complex, alpha subunit (NCBI ptt file) low > 76
Escherichia coli BL21 0.36 ECD_03136 DNA recombination-mediator A family protein 0.54 ECD_02265 enoyl-CoA hydratase/epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase low > 61
Escherichia coli BW25113 0.36 b4473 smf hypothetical protein (NCBI) 0.54 b2341 yfcX fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase (NCBI) low > 76
Escherichia coli ECOR38 0.36 HEPCGN_16365 dprA DNA-protecting protein DprA 0.54 HEPCGN_21755 fadJ fatty acid oxidation complex subunit alpha FadJ low > 88
Escherichia coli ECRC98 0.36 JDDGAC_21165 dprA DNA-protecting protein DprA 0.54 JDDGAC_26520 fadJ fatty acid oxidation complex subunit alpha FadJ low > 87
Escherichia coli ECOR27 0.36 NOLOHH_09335 dprA DNA-protecting protein DprA 0.54 NOLOHH_14195 fadJ fatty acid oxidation complex subunit alpha FadJ low > 76
Pantoea agglomerans CFBP13505 P0401 0.36 PagCFBP13505_RS22540 DNA-protecting protein DprA 0.55 PagCFBP13505_RS00085 fatty acid oxidation complex subunit alpha FadJ low > 74
Escherichia coli Nissle 1917 0.36 ECOLIN_RS18860 DNA-protecting protein DprA 0.54 ECOLIN_RS13550 fatty acid oxidation complex subunit alpha FadJ low > 55
Escherichia coli ECRC101 0.36 MCAODC_08065 dprA DNA-protecting protein DprA 0.54 MCAODC_13590 fadJ fatty acid oxidation complex subunit alpha FadJ low > 87
Escherichia coli ECRC102 0.36 NIAGMN_15305 dprA DNA-protecting protein DprA 0.54 NIAGMN_20335 fadJ fatty acid oxidation complex subunit alpha FadJ low > 80
Escherichia fergusonii Becca 0.36 EFB2_00538 hypothetical protein 0.54 EFB2_01518 Fatty acid oxidation complex subunit alpha low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00418 hypothetical protein 0.56 OHPLBJKB_01365 Fatty acid oxidation complex subunit alpha low > 74
Shewanella sp. ANA-3 0.35 Shewana3_0037 DNA protecting protein DprA (RefSeq) 0.52 Shewana3_1461 fadJ multifunctional fatty acid oxidation complex subunit alpha (RefSeq) low > 73
Erwinia amylovora T8 0.35 OLJFJH_03705 DNA-protecting protein DprA 0.45 OLJFJH_11135 fatty acid oxidation complex subunit alpha FadJ low > 58
Escherichia coli ECRC62 0.35 BNILDI_02185 dprA DNA-protecting protein DprA 0.54 BNILDI_13110 fadJ fatty acid oxidation complex subunit alpha FadJ low > 75
Enterobacter sp. TBS_079 0.35 MPMX20_04193 hypothetical protein 0.55 MPMX20_03268 Fatty acid oxidation complex subunit alpha low > 85
Klebsiella pneumoniae MKP103 0.35 KDGMDA_06535 DNA-protecting protein DprA 0.53 KDGMDA_27290 fatty acid oxidation complex subunit alpha FadJ low > 95
Klebsiella michiganensis M5al 0.34 BWI76_RS25665 DNA-processing protein DprA 0.53 BWI76_RS20455 multifunctional fatty acid oxidation complex subunit alpha low > 92
Shewanella loihica PV-4 0.34 Shew_3734 DNA protecting protein DprA (RefSeq) 0.52 Shew_2425 fadJ multifunctional fatty acid oxidation complex subunit alpha (RefSeq) low > 60
Kangiella aquimarina DSM 16071 0.33 B158DRAFT_0400 DNA protecting protein DprA 0.49 B158DRAFT_1008 fatty oxidation complex, alpha subunit FadJ low > 40
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF2571 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake 0.26 GFF875 Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) low > 90
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS20480 DNA processing protein DprA 0.25 RR42_RS22630 3-hydroxyacyl-CoA dehydrogenase low > 128
Alteromonas macleodii MIT1002 0.32 MIT1002_00022 DNA protecting protein DprA 0.54 MIT1002_01287 Fatty acid oxidation complex subunit alpha 0.48 16
Dechlorosoma suillum PS 0.31 Dsui_0819 DNA protecting protein DprA 0.25 Dsui_0323 3-hydroxyacyl-CoA dehydrogenase low > 51
Variovorax sp. OAS795 0.31 ABID97_RS01830 DNA-processing protein DprA 0.22 ABID97_RS06010 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein low > 91
Castellaniella sp019104865 MT123 0.31 ABCV34_RS14195 DNA-processing protein DprA 0.21 ABCV34_RS09055 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein low > 48
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS10145 DNA-processing protein DprA 0.25 LRK54_RS16925 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein low > 59
Rhodanobacter denitrificans MT42 0.30 LRK55_RS09785 DNA-processing protein DprA 0.25 LRK55_RS16640 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein low > 63
Acidovorax sp. GW101-3H11 0.29 Ac3H11_4411 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake 0.22 Ac3H11_1931 Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) low > 79
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.4746.1 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake 0.26 Xcc-8004.3683.1 Enoyl-CoA hydratase (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) low > 74
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS13870 DNA-processing protein DprA 0.26 ABZR86_RS07195 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein low > 74
Paraburkholderia bryophila 376MFSha3.1 0.28 H281DRAFT_02242 DNA protecting protein DprA 0.22 H281DRAFT_00361 (3S)-hydroxyadipyl-CoA dehydrogenase (EC 1.1.1.35) / enoyl-CoA hydratase domain (from data) low > 103
Azospirillum sp. SherDot2 0.28 MPMX19_01508 hypothetical protein 0.22 MPMX19_05225 Fatty acid oxidation complex subunit alpha low > 112
Ralstonia solanacearum GMI1000 0.28 RS_RS00340 DNA-protecting protein DprA 0.23 RS_RS08885 3-hydroxyacyl-CoA dehydrogenase low > 80
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS04985 DNA-processing protein DprA 0.27 ABZR87_RS23345 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein low > 80
Magnetospirillum magneticum AMB-1 0.27 AMB_RS03500 DNA-protecting protein DprA 0.23 AMB_RS15050 multifunctional fatty acid oxidation complex subunit alpha low > 64
Ralstonia solanacearum PSI07 0.26 RPSI07_RS23610 DNA-protecting protein DprA 0.23 RPSI07_RS16345 3-hydroxyacyl-CoA dehydrogenase low > 81
Lysobacter sp. OAE881 0.25 ABIE51_RS02235 DNA-processing protein DprA 0.26 ABIE51_RS13895 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein low > 62
Agrobacterium fabrum C58 0.25 Atu1305 DNA processing chain A 0.25 Atu0503 enoyl-CoA hydratase low > 89
Dinoroseobacter shibae DFL-12 0.24 Dshi_1138 DNA protecting protein DprA (RefSeq) 0.25 Dshi_0835 3-hydroxyacyl-CoA dehydrogenase NAD-binding (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.22 PGA1_c06230 putative protein Smf 0.24 PGA1_c22740 fatty acid oxidation complex subunit alpha low > 62

Not shown: 30 genomes with orthologs for CSW01_00245 only; 10 genomes with orthologs for CSW01_05330 only