Conservation of cofitness between CSW01_04605 and CSW01_04590 in Vibrio cholerae E7946 ATCC 55056

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04605 LOG family protein 1.0 CSW01_04590 transcriptional regulator GcvA 0.53 6
Klebsiella pneumoniae MKP103 0.71 KDGMDA_03400 nucleotide 5'-monophosphate nucleosidase PpnN 0.63 KDGMDA_03515 Glycine cleavage system transcriptional activator low > 94
Klebsiella pneumoniae MRSN742743 0.71 GJGHJB_00962 ppnN nucleotide 5'-monophosphate nucleosidase PpnN 0.63 GJGHJB_00939 gcvA Glycine cleavage system transcriptional activator low > 83
Enterobacter asburiae PDN3 0.71 EX28DRAFT_2877 Predicted Rossmann fold nucleotide-binding protein 0.71 EX28DRAFT_2883 Transcriptional regulator low > 76
Dickeya dadantii 3937 0.71 DDA3937_RS05070 LOG family protein 0.71 DDA3937_RS05050 transcriptional regulator GcvA low > 74
Pectobacterium carotovorum WPP14 0.71 HER17_RS16395 nucleotide 5'-monophosphate nucleosidase PpnN 0.71 HER17_RS16415 transcriptional regulator GcvA low > 75
Serratia liquefaciens MT49 0.71 IAI46_20320 LOG family protein 0.72 IAI46_20340 transcriptional regulator GcvA low > 87
Enterobacter sp. TBS_079 0.71 MPMX20_03665 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase 0.71 MPMX20_03671 Glycine cleavage system transcriptional activator low > 85
Klebsiella michiganensis M5al 0.71 BWI76_RS22870 LOG family protein 0.71 BWI76_RS22955 transcriptional regulator GcvA low > 92
Rahnella sp. WP5 0.70 EX31_RS13090 LOG family protein 0.72 EX31_RS13110 transcriptional regulator GcvA low > 89
Dickeya dianthicola 67-19 0.70 HGI48_RS05070 LOG family protein 0.71 HGI48_RS05050 transcriptional regulator GcvA low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.70 GFF4850 Decarboxylase family protein 0.73 GFF4865 Glycine cleavage system transcriptional activator GcvA low > 78
Dickeya dianthicola ME23 0.70 DZA65_RS05410 LOG family protein 0.71 DZA65_RS05390 transcriptional regulator GcvA low > 75
Escherichia coli BW25113 0.70 b2795 ygdH hypothetical protein (NCBI) 0.72 b2808 gcvA DNA-binding transcriptional dual regulator (NCBI) low > 76
Escherichia fergusonii Becca 0.70 EFB2_01122 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase 0.72 EFB2_01109 Glycine cleavage system transcriptional activator low > 86
Escherichia coli Nissle 1917 0.70 ECOLIN_RS15585 nucleotide 5'-monophosphate nucleosidase PpnN 0.72 ECOLIN_RS15650 glycine cleavage system transcriptional regulator GcvA low > 55
Escherichia coli BL21 0.70 ECD_02640 UPF0717 family protein 0.72 ECD_02659 glycine cleavage system transcriptional activator; autorepressor low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_00936 'Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase' transl_table=11 0.72 OHPLBJKB_00923 Glycine cleavage system transcriptional activator low > 74
Escherichia coli ECRC102 0.70 NIAGMN_17955 ppnN nucleotide 5'-monophosphate nucleosidase 0.72 NIAGMN_17890 gcvA glycine cleavage system transcriptional regulator GcvA 0.52 49
Escherichia coli ECOR27 0.70 NOLOHH_12065 ppnN nucleotide 5'-monophosphate nucleosidase 0.72 NOLOHH_12000 gcvA glycine cleavage system transcriptional regulator GcvA low > 75
Escherichia coli ECRC98 0.70 JDDGAC_23850 ppnN nucleotide 5'-monophosphate nucleosidase 0.72 JDDGAC_23785 gcvA glycine cleavage system transcriptional regulator GcvA low > 87
Escherichia coli ECRC99 0.70 KEDOAH_07945 ppnN nucleotide 5'-monophosphate nucleosidase 0.72 KEDOAH_08010 gcvA glycine cleavage system transcriptional regulator GcvA — —
Escherichia coli ECRC62 0.70 BNILDI_10570 ppnN nucleotide 5'-monophosphate nucleosidase 0.72 BNILDI_10505 gcvA glycine cleavage system transcriptional regulator GcvA low > 75
Escherichia coli ECRC100 0.70 OKFHMN_20185 ppnN nucleotide 5'-monophosphate nucleosidase 0.72 OKFHMN_20120 gcvA glycine cleavage system transcriptional regulator GcvA low > 79
Escherichia coli ECOR38 0.70 HEPCGN_19440 ppnN nucleotide 5'-monophosphate nucleosidase 0.72 HEPCGN_19375 gcvA glycine cleavage system transcriptional regulator GcvA low > 88
Escherichia coli ECRC101 0.70 MCAODC_10710 ppnN nucleotide 5'-monophosphate nucleosidase 0.72 MCAODC_10645 gcvA glycine cleavage system transcriptional regulator GcvA low > 87
Shewanella oneidensis MR-1 0.69 SO1550 conserved hypothetical protein (NCBI ptt file) 0.70 SO1533 glycine cleavage system transcriptional activator, putative (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.69 Shewana3_2885 hypothetical protein (RefSeq) 0.71 Shewana3_2894 DNA-binding transcriptional activator GcvA (RefSeq) — —
Pantoea sp. MT58 0.69 IAI47_04045 LOG family protein 0.71 IAI47_04025 transcriptional regulator GcvA low > 76
Pantoea agglomerans CFBP13505 P0401 0.69 PagCFBP13516_RS04315 ppnN nucleotide 5'-monophosphate nucleosidase PpnN 0.71 PagCFBP13516_RS04295 transcriptional regulator GcvA low > 80
Erwinia amylovora T8 0.69 OLJFJH_09190 nucleotide 5'-monophosphate nucleosidase PpnN 0.72 OLJFJH_09170 Glycine cleavage system transcriptional activator low > 58
Erwinia tracheiphila SCR3 0.68 LU632_RS06275 ppnN nucleotide 5'-monophosphate nucleosidase PpnN 0.71 LU632_RS06255 transcriptional regulator GcvA 0.56 19
Erwinia tracheiphila HP pepo 2.2 0.68 IJEDHG_17295 ppnN nucleotide 5'-monophosphate nucleosidase PpnN 0.71 IJEDHG_17275 gcvA Glycine cleavage system transcriptional activator low > 61
Shewanella loihica PV-4 0.66 Shew_2755 hypothetical protein (RefSeq) 0.71 Shew_2764 DNA-binding transcriptional activator GcvA (RefSeq) — —
Shewanella amazonensis SB2B 0.66 Sama_2419 hypothetical protein (RefSeq) 0.72 Sama_2429 DNA-binding transcriptional activator GcvA (RefSeq) low > 62
Pseudomonas sp. DMC3 0.63 GFF1742 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase 0.29 GFF687 Glycine cleavage system transcriptional activator low > 89
Pseudomonas lactucae CFBP13502 0.63 GEMAOFIL_01737 'Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase' transl_table=11 0.30 GEMAOFIL_02417 Glycine cleavage system transcriptional activator low > 96
Pseudomonas simiae WCS417 0.63 PS417_07995 LOG family protein 0.30 PS417_23350 LysR family transcriptional regulator low > 88
Pseudomonas fluorescens SBW25 0.62 PFLU_RS07970 LOG family protein 0.30 PFLU_RS25165 LysR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.62 PFLU_RS07970 LOG family protein 0.30 PFLU_RS25165 LysR family transcriptional regulator low > 109
Pseudomonas protegens RBAN4 0.62 FABNJH_12820 ppnN nucleotide 5'-monophosphate nucleosidase PpnN 0.30 FABNJH_19680 lysR Transcriptional regulator, LysR family — —
Pseudomonas orientalis W4I3 0.62 QF045_RS10720 nucleotide 5'-monophosphate nucleosidase PpnN 0.29 QF045_RS03520 LysR family transcriptional regulator low > 93
Pseudomonas aeruginosa MRSN321 0.62 PFGADD_00840 ppnN nucleotide 5'-monophosphate nucleosidase PpnN 0.31 PFGADD_00455 Glycine cleavage system transcriptional activator low > 99
Pseudomonas aeruginosa PUPa3 0.62 NPBIFN_00842 ppnN nucleotide 5'-monophosphate nucleosidase PpnN 0.31 NPBIFN_00459 Glycine cleavage system transcriptional activator low > 101
Pseudomonas aeruginosa PA14 0.62 IKLFDK_21195 nucleotide 5'-monophosphate nucleosidase PpnN 0.31 IKLFDK_23190 LysR family transcriptional regulator 0.36 26
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_22700 LOG family protein 0.31 AO356_15125 LysR family transcriptional regulator low > 104
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_3498 Conserved hypothetical protein 730 0.29 Psyr_5015 transcriptional regulator, LysR family low > 86
Pseudomonas sp. RS175 0.62 PFR28_02506 'Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase' transl_table=11 0.31 PFR28_04727 Glycine cleavage system transcriptional activator low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_3498 Conserved hypothetical protein 730 0.29 Psyr_5015 transcriptional regulator, LysR family low > 86
Pseudomonas fluorescens FW300-N2E2 0.62 Pf6N2E2_424 Decarboxylase family protein 0.37 Pf6N2E2_1560 Glycine cleavage system transcriptional activator GcvA low > 103
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_3836 Decarboxylase family protein 0.29 PfGW456L13_555 Glycine cleavage system transcriptional activator low > 87
Pseudomonas segetis P6 0.61 ACVTMO_RS17585 ppnN nucleotide 5'-monophosphate nucleosidase PpnN 0.29 ACVTMO_RS01970 LysR family transcriptional regulator low > 75
Pseudomonas sp. BP01 0.61 JOY50_RS07930 ppnN nucleotide 5'-monophosphate nucleosidase PpnN 0.30 JOY50_RS09180 LysR family transcriptional regulator low > 84
Alteromonas macleodii MIT1002 0.61 MIT1002_00986 LOG family protein YgdH 0.65 MIT1002_01520 Gcv operon activator low > 70
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_28990 LOG family protein 0.29 AO353_15505 LysR family transcriptional regulator low > 101
Pseudomonas sp. SVBP6 0.60 COO64_RS07800 ppnN nucleotide 5'-monophosphate nucleosidase PpnN 0.34 COO64_RS14470 gcvA transcriptional regulator GcvA low > 91
Pseudomonas sp. S08-1 0.60 OH686_10825 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase PpnN 0.31 OH686_11695 Transcriptional regulator, LysR family low > 80
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_5817 Decarboxylase family protein 0.30 Pf1N1B4_1817 Glycine cleavage system transcriptional activator low > 87
Dyella japonica UNC79MFTsu3.2 0.59 ABZR86_RS09795 nucleotide 5'-monophosphate nucleosidase PpnN 0.33 ABZR86_RS20860 transcriptional regulator GcvA — —
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS13850 nucleotide 5'-monophosphate nucleosidase PpnN 0.27 LRK54_RS06630 transcriptional regulator GcvA — —
Rhodanobacter denitrificans MT42 0.58 LRK55_RS13565 nucleotide 5'-monophosphate nucleosidase PpnN 0.27 LRK55_RS06375 transcriptional regulator GcvA — —
Rhodanobacter sp000427505 FW510-R12 0.58 LRK53_RS14750 nucleotide 5'-monophosphate nucleosidase PpnN 0.26 LRK53_RS10360 LysR substrate-binding domain-containing protein — —
Pseudomonas stutzeri RCH2 0.58 Psest_4222 Predicted Rossmann fold nucleotide-binding protein 0.30 Psest_2739 Transcriptional regulator low > 67
Lysobacter sp. OAE881 0.55 ABIE51_RS15360 nucleotide 5'-monophosphate nucleosidase PpnN 0.26 ABIE51_RS00605 LysR substrate-binding domain-containing protein — —
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_2525 Predicted Rossmann fold nucleotide-binding protein 0.53 B158DRAFT_0909 Transcriptional regulator low > 40

Not shown: 4 genomes with orthologs for CSW01_04605 only; 33 genomes with orthologs for CSW01_04590 only