Conservation of cofitness between CSW01_07480 and CSW01_03470 in Vibrio cholerae E7946 ATCC 55056

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07480 ribosomal RNA large subunit methyltransferase K/L 1.0 CSW01_03470 peptide chain release factor 3 0.68 13
Pantoea agglomerans CFBP13505 P0401 0.57 PagCFBP13505_RS04640 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.85 PagCFBP13505_RS16330 peptide chain release factor 3 low > 74
Escherichia coli ECOR27 0.57 NOLOHH_21835 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.86 NOLOHH_03600 prfC peptide chain release factor 3 low > 76
Escherichia coli ECRC62 0.57 BNILDI_20000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.86 BNILDI_08000 prfC peptide chain release factor 3 low > 75
Escherichia coli ECRC101 0.57 MCAODC_24670 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.86 MCAODC_01795 prfC peptide chain release factor 3 low > 87
Escherichia coli ECRC100 0.57 OKFHMN_05280 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.86 OKFHMN_11280 prfC peptide chain release factor 3 low > 79
Escherichia coli ECRC99 0.57 KEDOAH_22455 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.86 KEDOAH_16865 prfC peptide chain release factor 3 — —
Escherichia coli ECRC102 0.57 NIAGMN_03000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.86 NIAGMN_09130 prfC peptide chain release factor 3 low > 80
Escherichia coli Nissle 1917 0.57 ECOLIN_RS04980 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.86 ECOLIN_RS25110 peptide chain release factor 3 low > 55
Escherichia coli ECOR38 0.57 HEPCGN_23240 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.86 HEPCGN_09285 prfC peptide chain release factor 3 low > 88
Escherichia fergusonii Becca 0.57 EFB2_03123 Ribosomal RNA large subunit methyltransferase K/L 0.86 EFB2_04072 Peptide chain release factor RF3 low > 86
Escherichia coli ECRC98 0.57 JDDGAC_08890 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.86 JDDGAC_14875 prfC peptide chain release factor 3 low > 87
Escherichia coli BW25113 0.57 b0948 ycbY predicted methyltransferase (NCBI) 0.86 b4375 prfC peptide chain release factor 3 (NCBI) 0.43 6
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_02718 Ribosomal RNA large subunit methyltransferase K/L 0.86 OHPLBJKB_03687 Peptide chain release factor RF3 low > 74
Escherichia coli BL21 0.57 ECD_00952 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent 0.86 ECD_04250 peptide chain release factor RF-3 low > 61
Pantoea sp. MT58 0.57 IAI47_12690 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.85 IAI47_03375 peptide chain release factor 3 low > 76
Pectobacterium carotovorum WPP14 0.56 HER17_RS11990 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.85 HER17_RS19065 peptide chain release factor 3 low > 75
Dickeya dianthicola ME23 0.56 DZA65_RS13375 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.86 DZA65_RS02505 peptide chain release factor 3 low > 75
Dickeya dianthicola 67-19 0.56 HGI48_RS12910 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.86 HGI48_RS02400 peptide chain release factor 3 — —
Serratia liquefaciens MT49 0.56 IAI46_08820 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.86 IAI46_02875 peptide chain release factor 3 0.57 45
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF3239 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.86 GFF1035 Peptide chain release factor 3 low > 78
Enterobacter sp. TBS_079 0.56 MPMX20_01599 Ribosomal RNA large subunit methyltransferase K/L 0.87 MPMX20_00673 Peptide chain release factor RF3 low > 85
Dickeya dadantii 3937 0.56 DDA3937_RS12840 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.86 DDA3937_RS02445 peptide chain release factor 3 low > 74
Erwinia amylovora T8 0.55 OLJFJH_15975 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.85 OLJFJH_01655 peptide chain release factor 3 low > 58
Enterobacter asburiae PDN3 0.55 EX28DRAFT_1995 Predicted N6-adenine-specific DNA methylase 0.87 EX28DRAFT_3583 peptide chain release factor 3 low > 76
Rahnella sp. WP5 0.55 EX31_RS18080 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.86 EX31_RS04095 peptide chain release factor 3 — —
Klebsiella michiganensis M5al 0.55 BWI76_RS09925 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase 0.87 BWI76_RS04100 peptide chain release factor 3 low > 92
Klebsiella pneumoniae MKP103 0.55 KDGMDA_18160 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.86 KDGMDA_12370 peptide chain release factor 3 low > 95
Erwinia tracheiphila SCR3 0.54 LU632_RS09965 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.85 LU632_RS02475 prfC peptide chain release factor 3 0.48 51
Erwinia tracheiphila HP pepo 2.2 0.53 IJEDHG_20480 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.85 IJEDHG_06470 prfC peptide chain release factor 3 low > 61
Shewanella loihica PV-4 0.50 Shew_1812 23S rRNA m(2)G2445 methyltransferase (RefSeq) 0.80 Shew_2820 prfC peptide chain release factor 3 (RefSeq) low > 60
Shewanella amazonensis SB2B 0.50 Sama_1600 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) 0.87 Sama_0968 prfC peptide chain release factor 3 (RefSeq) low > 62
Shewanella sp. ANA-3 0.49 Shewana3_1601 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) 0.81 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.44 MIT1002_02036 Ribosomal RNA large subunit methyltransferase K/L 0.82 MIT1002_01192 Peptide chain release factor 3 low > 70
Pseudomonas sp. BP01 0.42 JOY50_RS22095 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.69 JOY50_RS22670 peptide chain release factor 3 low > 84
Pseudomonas stutzeri RCH2 0.42 Psest_1949 Predicted N6-adenine-specific DNA methylase 0.70 Psest_3351 peptide chain release factor 3 low > 67
Pseudomonas putida KT2440 0.42 PP_2096 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase 0.69 PP_0872 Peptide chain release factor 3 0.34 67
Pseudomonas sp. SVBP6 0.42 COO64_RS05295 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.69 COO64_RS04060 peptide chain release factor 3 low > 93
Pseudomonas sp. DMC3 0.42 GFF5254 Ribosomal RNA large subunit methyltransferase K/L 0.69 GFF5016 Peptide chain release factor RF3 low > 89
Pseudomonas lactucae CFBP13502 0.42 GEMAOFIL_04331 Ribosomal RNA large subunit methyltransferase K/L 0.69 GEMAOFIL_01011 Peptide chain release factor RF3 low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas aeruginosa PUPa3 0.42 DQ20_RS33860 rlmKL;go_function=RNA bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.69 DQ20_RS48655 peptide chain release factor 3 low > 101
Pseudomonas aeruginosa MRSN321 0.42 DY961_RS01710 rlmKL;go_function=RNA bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.69 DY961_RS13355 peptide chain release factor 3 low > 100
Pseudomonas aeruginosa PA14 0.42 IKLFDK_15510 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.69 IKLFDK_20120 peptide chain release factor 3 low > 98
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_4094 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.69 PfGW456L13_5060 Peptide chain release factor 3 low > 87
Pseudomonas segetis P6 0.41 ACVTMO_RS14985 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.70 ACVTMO_RS19285 peptide chain release factor 3 low > 75
Pseudomonas fluorescens SBW25 0.41 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.69 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.69 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas orientalis W4I3 0.41 QF045_RS22735 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.69 QF045_RS07015 peptide chain release factor 3 low > 93
Pseudomonas simiae WCS417 0.41 PS417_20930 50S rRNA methyltransferase 0.69 PS417_04030 peptide chain release factor 3 — —
Rhodanobacter sp000427505 FW510-R12 0.41 LRK53_RS14000 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.66 LRK53_RS04625 peptide chain release factor 3 — —
Pseudomonas sp. RS175 0.41 PFR28_01055 Ribosomal RNA large subunit methyltransferase K/L 0.69 PFR28_00118 Peptide chain release factor RF3 — —
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS21235 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.66 ABZR86_RS19000 peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_00775 50S rRNA methyltransferase 0.69 AO353_05420 peptide chain release factor 3 low > 101
Pseudomonas sp. S08-1 0.41 OH686_03110 23S rRNA (guanine(2445)-N(2))-methyltransferase / 23S rRNA (guanine(2069)-N(7))-methyltransferase 0.69 OH686_08765 peptide chain release factor 3 — —
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS14600 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.66 LRK54_RS05380 peptide chain release factor 3 — —
Rhodanobacter denitrificans MT42 0.40 LRK55_RS14315 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.66 LRK55_RS05155 peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_2346 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.69 Pf6N2E2_3327 Peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_02605 50S rRNA methyltransferase 0.69 AO356_07285 peptide chain release factor 3 — —
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_03440 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.66 OKGIIK_01430 prfC peptide chain release factor 3 — —
Marinobacter adhaerens HP15 0.38 HP15_1379 RNA methylase 0.81 HP15_541 peptide chain release factor 3 low > 73
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_2229 23S rRNA m(2)G-2445 methyltransferase (EC 2.1.1.52) 0.77 B158DRAFT_2239 peptide chain release factor 3 low > 40
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.3335.1 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.63 Xcc-8004.1590.1 Peptide chain release factor 3 — —
Lysobacter sp. OAE881 0.37 ABIE51_RS14475 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.66 ABIE51_RS16210 peptide chain release factor 3 — —
Acinetobacter baumannii LAC-4 0.36 RR41_RS10075 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.67 RR41_RS16200 peptide chain release factor 3 0.43 21
Acinetobacter radioresistens SK82 0.35 MPMX26_01097 Ribosomal RNA large subunit methyltransferase K/L 0.68 MPMX26_00476 Peptide chain release factor RF3 low > 36

Not shown: 2 genomes with orthologs for CSW01_07480 only; 47 genomes with orthologs for CSW01_03470 only