Conservation of cofitness between CSW01_01735 and CSW01_03470 in Vibrio cholerae E7946 ATCC 55056

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01735 peptidase M23 1.0 CSW01_03470 peptide chain release factor 3 0.64 7
Dickeya dianthicola 67-19 0.29 HGI48_RS00780 murein hydrolase activator EnvC 0.86 HGI48_RS02400 peptide chain release factor 3 — —
Dickeya dadantii 3937 0.29 DDA3937_RS20420 murein hydrolase activator EnvC 0.86 DDA3937_RS02445 peptide chain release factor 3 low > 74
Shewanella loihica PV-4 0.29 Shew_3807 peptidase M23B (RefSeq) 0.80 Shew_2820 prfC peptide chain release factor 3 (RefSeq) low > 60
Pectobacterium carotovorum WPP14 0.29 HER17_RS20750 murein hydrolase activator EnvC 0.85 HER17_RS19065 peptide chain release factor 3 low > 75
Dickeya dianthicola ME23 0.29 DZA65_RS00835 murein hydrolase activator EnvC 0.86 DZA65_RS02505 peptide chain release factor 3 low > 75
Shewanella amazonensis SB2B 0.29 Sama_0059 M24/M37 family peptidase (RefSeq) 0.87 Sama_0968 prfC peptide chain release factor 3 (RefSeq) low > 62
Shewanella sp. ANA-3 0.28 Shewana3_0050 peptidase M23B (RefSeq) 0.81 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) low > 73
Enterobacter sp. TBS_079 0.28 MPMX20_00120 Murein hydrolase activator EnvC 0.87 MPMX20_00673 Peptide chain release factor RF3 low > 85
Escherichia fergusonii Becca 0.28 EFB2_00197 Murein hydrolase activator EnvC 0.86 EFB2_04072 Peptide chain release factor RF3 low > 86
Enterobacter asburiae PDN3 0.28 EX28DRAFT_3864 Membrane-bound metallopeptidase 0.87 EX28DRAFT_3583 peptide chain release factor 3 low > 76
Escherichia coli ECOR38 0.28 HEPCGN_14570 envC murein hydrolase activator EnvC 0.86 HEPCGN_09285 prfC peptide chain release factor 3 low > 88
Escherichia coli Nissle 1917 0.28 ECOLIN_RS20620 murein hydrolase activator EnvC 0.86 ECOLIN_RS25110 peptide chain release factor 3 low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_00086 Murein hydrolase activator EnvC 0.86 OHPLBJKB_03687 Peptide chain release factor RF3 0.67 30
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF397 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP 0.86 GFF1035 Peptide chain release factor 3 — —
Escherichia coli ECRC101 0.28 MCAODC_06240 envC murein hydrolase activator EnvC 0.86 MCAODC_01795 prfC peptide chain release factor 3 low > 87
Escherichia coli ECRC98 0.28 JDDGAC_19355 envC murein hydrolase activator EnvC 0.86 JDDGAC_14875 prfC peptide chain release factor 3 low > 87
Escherichia coli BW25113 0.28 b3613 yibP putative membrane protein (VIMSS) 0.86 b4375 prfC peptide chain release factor 3 (NCBI) 0.34 50
Escherichia coli ECRC102 0.28 NIAGMN_13490 envC murein hydrolase activator EnvC 0.86 NIAGMN_09130 prfC peptide chain release factor 3 low > 80
Escherichia coli ECRC100 0.28 OKFHMN_15730 envC murein hydrolase activator EnvC 0.86 OKFHMN_11280 prfC peptide chain release factor 3 low > 79
Escherichia coli ECOR27 0.28 NOLOHH_07610 envC murein hydrolase activator EnvC 0.86 NOLOHH_03600 prfC peptide chain release factor 3 low > 76
Escherichia coli ECRC99 0.28 KEDOAH_12420 envC murein hydrolase activator EnvC 0.86 KEDOAH_16865 prfC peptide chain release factor 3 — —
Escherichia coli ECRC62 0.28 BNILDI_03905 envC murein hydrolase activator EnvC 0.86 BNILDI_08000 prfC peptide chain release factor 3 low > 75
Alteromonas macleodii MIT1002 0.27 MIT1002_00489 Septal ring factor 0.82 MIT1002_01192 Peptide chain release factor 3 low > 70
Escherichia coli BL21 0.27 ECD_03471 activator of AmiB,C murein hydrolases, septal ring factor 0.86 ECD_04250 peptide chain release factor RF-3 — —
Serratia liquefaciens MT49 0.27 IAI46_24715 murein hydrolase activator EnvC 0.86 IAI46_02875 peptide chain release factor 3 low > 87
Klebsiella michiganensis M5al 0.27 BWI76_RS27235 murein hydrolase activator EnvC 0.87 BWI76_RS04100 peptide chain release factor 3 low > 92
Rahnella sp. WP5 0.27 EX31_RS14365 murein hydrolase activator EnvC 0.86 EX31_RS04095 peptide chain release factor 3 — —
Klebsiella pneumoniae MKP103 0.26 KDGMDA_07920 murein hydrolase activator EnvC 0.86 KDGMDA_12370 peptide chain release factor 3 low > 95
Pantoea sp. MT58 0.26 IAI47_00720 murein hydrolase activator EnvC 0.85 IAI47_03375 peptide chain release factor 3 low > 76
Erwinia tracheiphila HP pepo 2.2 0.26 IJEDHG_07900 envC murein hydrolase activator EnvC 0.85 IJEDHG_06470 prfC peptide chain release factor 3 low > 61
Erwinia tracheiphila SCR3 0.26 LU632_RS21895 envC murein hydrolase activator EnvC 0.85 LU632_RS02475 prfC peptide chain release factor 3 0.77 55
Pantoea agglomerans CFBP13505 P0401 0.25 PagCFBP13505_RS18625 murein hydrolase activator EnvC 0.85 PagCFBP13505_RS16330 peptide chain release factor 3 low > 74
Erwinia amylovora T8 0.25 OLJFJH_05895 murein hydrolase activator EnvC 0.85 OLJFJH_01655 peptide chain release factor 3 low > 58
Pseudomonas simiae WCS417 0.23 PS417_01600 peptidase M23 0.69 PS417_04030 peptide chain release factor 3 — —
Pseudomonas fluorescens SBW25 0.23 PFLU_RS01650 murein hydrolase activator EnvC 0.69 PFLU_RS04070 peptide chain release factor 3 0.83 2
Pseudomonas fluorescens SBW25-INTG 0.23 PFLU_RS01650 murein hydrolase activator EnvC 0.69 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas lactucae CFBP13502 0.22 GEMAOFIL_00540 Murein hydrolase activator EnvC 0.69 GEMAOFIL_01011 Peptide chain release factor RF3 low > 96
Kangiella aquimarina DSM 16071 0.22 B158DRAFT_0705 Membrane-bound metallopeptidase 0.77 B158DRAFT_2239 peptide chain release factor 3 low > 40
Pseudomonas fluorescens FW300-N2E2 0.22 Pf6N2E2_3834 Lipoprotein NlpD 0.69 Pf6N2E2_3327 Peptide chain release factor 3 — —
Pseudomonas sp. RS175 0.22 PFR28_04937 Murein hydrolase activator EnvC 0.69 PFR28_00118 Peptide chain release factor RF3 — —
Pseudomonas orientalis W4I3 0.22 QF045_RS04670 murein hydrolase activator EnvC 0.69 QF045_RS07015 peptide chain release factor 3 low > 93
Pseudomonas fluorescens FW300-N2C3 0.22 AO356_09775 peptidase M23 0.69 AO356_07285 peptide chain release factor 3 — —
Marinobacter adhaerens HP15 0.22 HP15_3006 peptidase M23B 0.81 HP15_541 peptide chain release factor 3 low > 73
Pseudomonas segetis P6 0.22 MPMX49_04295 Murein hydrolase activator EnvC 0.70 MPMX49_03892 Peptide chain release factor RF3 low > 75
Pseudomonas fluorescens FW300-N2E3 0.22 AO353_12110 peptidase M23 0.69 AO353_05420 peptide chain release factor 3 low > 101
Pseudomonas sp. DMC3 0.21 GFF4090 Murein hydrolase activator EnvC 0.69 GFF5016 Peptide chain release factor RF3 low > 89
Pseudomonas sp. S08-1 0.21 OH686_14650 Murein hydrolase activator EnvC 0.69 OH686_08765 peptide chain release factor 3 — —
Pseudomonas sp. SVBP6 0.20 COO64_RS13290 murein hydrolase activator EnvC 0.69 COO64_RS04060 peptide chain release factor 3 low > 93
Pseudomonas sp. BP01 0.20 JOY50_RS09415 murein hydrolase activator EnvC 0.69 JOY50_RS22670 peptide chain release factor 3 0.41 63
Pseudomonas putida KT2440 0.20 PP_5057 Peptidase, M23/M37 family 0.69 PP_0872 Peptide chain release factor 3 low > 96
Lysobacter sp. OAE881 0.20 ABIE51_RS19260 peptidoglycan DD-metalloendopeptidase family protein 0.66 ABIE51_RS16210 peptide chain release factor 3 — —
Pseudomonas aeruginosa PA14 0.20 IKLFDK_27840 peptidase M23 0.69 IKLFDK_20120 peptide chain release factor 3 low > 98
Pseudomonas aeruginosa PUPa3 0.20 DQ20_RS50605 murein hydrolase activator EnvC 0.69 DQ20_RS48655 peptide chain release factor 3 low > 101
Pseudomonas fluorescens GW456-L13 0.20 PfGW456L13_354 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP 0.69 PfGW456L13_5060 Peptide chain release factor 3 low > 87
Pseudomonas aeruginosa MRSN321 0.20 DY961_RS11495 murein hydrolase activator EnvC 0.69 DY961_RS13355 peptide chain release factor 3 low > 100
Pseudomonas stutzeri RCH2 0.19 Psest_0161 Membrane-bound metallopeptidase 0.70 Psest_3351 peptide chain release factor 3 low > 67
Xanthomonas campestris pv. campestris strain 8004 0.17 Xcc-8004.29.1 Cell wall endopeptidase, family M23/M37 0.63 Xcc-8004.1590.1 Peptide chain release factor 3 — —
Dyella japonica UNC79MFTsu3.2 0.15 ABZR86_RS13355 peptidoglycan DD-metalloendopeptidase family protein 0.66 ABZR86_RS19000 peptide chain release factor 3 — —
Rhodanobacter sp. FW510-T8 0.14 OKGIIK_12915 Peptidase M23 0.66 OKGIIK_01430 prfC peptide chain release factor 3 — —
Rhodanobacter denitrificans FW104-10B01 0.14 LRK54_RS10955 peptidoglycan DD-metalloendopeptidase family protein 0.66 LRK54_RS05380 peptide chain release factor 3 — —
Rhodanobacter denitrificans MT42 0.14 LRK55_RS10660 peptidoglycan DD-metalloendopeptidase family protein 0.66 LRK55_RS05155 peptide chain release factor 3 — —
Rhodanobacter sp000427505 FW510-R12 0.14 LRK53_RS03745 peptidoglycan DD-metalloendopeptidase family protein 0.66 LRK53_RS04625 peptide chain release factor 3 — —
Desulfovibrio vulgaris Hildenborough JW710 0.11 DVU2337 peptidase, M23/M37 family (TIGR) 0.59 DVU3116 prfC peptide chain release factor 3 (TIGR) low > 55
Echinicola vietnamensis KMM 6221, DSM 17526 0.09 Echvi_4076 Membrane-bound metallopeptidase 0.49 Echvi_0584 peptide chain release factor 3 low > 79
Bacteroides stercoris CC31F 0.09 HMPREF1181_RS02875 peptidoglycan DD-metalloendopeptidase family protein 0.46 HMPREF1181_RS05585 peptide chain release factor 3 low > 56
Bacteroides ovatus ATCC 8483 0.09 BACOVA_01841 peptidase, M23 family 0.47 BACOVA_04458 peptide chain release factor 3 low > 96

Not shown: 5 genomes with orthologs for CSW01_01735 only; 47 genomes with orthologs for CSW01_03470 only