Conservation of cofitness between CSW01_03080 and CSW01_03335 in Vibrio cholerae E7946 ATCC 55056

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03080 YraN family protein 1.0 CSW01_03335 ribosome assembly RNA-binding protein YhbY 0.44 10
Dickeya dianthicola 67-19 0.45 HGI48_RS01600 YraN family protein 0.80 HGI48_RS03190 ribosome assembly RNA-binding protein YhbY low > 71
Dickeya dianthicola ME23 0.44 DZA65_RS01675 YraN family protein 0.80 DZA65_RS03185 ribosome assembly RNA-binding protein YhbY low > 75
Dickeya dadantii 3937 0.44 DDA3937_RS01705 YraN family protein 0.80 DDA3937_RS03020 ribosome assembly RNA-binding protein YhbY low > 74
Pectobacterium carotovorum WPP14 0.43 HER17_RS19870 YraN family protein 0.78 HER17_RS18325 ribosome assembly RNA-binding protein YhbY — —
Erwinia amylovora T8 0.42 OLJFJH_02290 YraN family protein 0.77 OLJFJH_07190 ribosome assembly RNA-binding protein YhbY low > 58
Rahnella sp. WP5 0.41 EX31_RS12540 YraN family protein 0.73 EX31_RS08590 ribosome assembly RNA-binding protein YhbY low > 89
Klebsiella michiganensis M5al 0.41 BWI76_RS24920 YraN family protein 0.80 BWI76_RS25155 RNA-binding protein — —
Klebsiella pneumoniae MKP103 0.40 KDGMDA_05790 YraN family protein 0.80 KDGMDA_05970 ribosome assembly RNA-binding protein YhbY — —
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS12180 YraN family protein 0.45 LRK54_RS16675 ribosome assembly RNA-binding protein YhbY low > 59
Serratia liquefaciens MT49 0.40 IAI46_22305 YraN family protein 0.80 IAI46_01885 ribosome assembly RNA-binding protein YhbY low > 87
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_11745 yraN YraN family protein 0.45 OKGIIK_08090 yhbY ribosome assembly RNA-binding protein YhbY — —
Rhodanobacter denitrificans MT42 0.39 LRK55_RS11915 YraN family protein 0.45 LRK55_RS16400 ribosome assembly RNA-binding protein YhbY low > 63
Escherichia coli ECOR38 0.39 HEPCGN_17100 yraN YraN family protein 0.81 HEPCGN_16925 yhbY ribosome assembly RNA-binding protein YhbY low > 88
Escherichia coli ECOR27 0.39 NOLOHH_10025 yraN YraN family protein 0.81 NOLOHH_09850 yhbY ribosome assembly RNA-binding protein YhbY low > 76
Escherichia coli ECRC62 0.39 BNILDI_01505 yraN YraN family protein 0.81 BNILDI_01685 yhbY ribosome assembly RNA-binding protein YhbY low > 75
Erwinia tracheiphila SCR3 0.39 LU632_RS02220 YraN family protein 0.76 LU632_RS21115 yhbY ribosome assembly RNA-binding protein YhbY low > 73
Escherichia coli BL21 0.38 ECD_03015 UPF0102 family protein 0.81 ECD_03045 RNA binding protein low > 61
Escherichia coli BW25113 0.38 b3148 yraN hypothetical protein (NCBI) 0.81 b3180 yhbY predicted RNA-binding protein (NCBI) low > 76
Escherichia coli Nissle 1917 0.38 ECOLIN_RS18095 YraN family protein 0.81 ECOLIN_RS18315 ribosome assembly RNA-binding protein YhbY low > 55
Escherichia fergusonii Becca 0.38 EFB2_00675 hypothetical protein 0.81 EFB2_00643 RNA-binding protein YhbY low > 86
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS11390 YraN family protein 0.51 ABZR86_RS06570 ribosome assembly RNA-binding protein YhbY low > 74
Rhodanobacter sp000427505 FW510-R12 0.38 LRK53_RS16310 YraN family protein 0.47 LRK53_RS12245 ribosome assembly RNA-binding protein YhbY low > 59
Escherichia coli ECRC98 0.38 JDDGAC_21850 yraN YraN family protein 0.81 JDDGAC_21675 yhbY ribosome assembly RNA-binding protein YhbY low > 87
Escherichia coli ECRC99 0.38 KEDOAH_09925 yraN YraN family protein 0.81 KEDOAH_10100 yhbY ribosome assembly RNA-binding protein YhbY — —
Escherichia coli ECRC100 0.38 OKFHMN_18225 yraN YraN family protein 0.81 OKFHMN_18050 yhbY ribosome assembly RNA-binding protein YhbY low > 79
Escherichia coli ECRC102 0.38 NIAGMN_15985 yraN YraN family protein 0.81 NIAGMN_15810 yhbY ribosome assembly RNA-binding protein YhbY low > 80
Escherichia coli ECRC101 0.38 MCAODC_08745 yraN YraN family protein 0.81 MCAODC_08570 yhbY ribosome assembly RNA-binding protein YhbY low > 87
Enterobacter asburiae PDN3 0.38 EX28DRAFT_3197 TIGR00252 family protein 0.80 EX28DRAFT_3231 putative RNA-binding protein, YhbY family low > 76
Erwinia tracheiphila HP pepo 2.2 0.37 IJEDHG_06690 YraN family protein 0.77 IJEDHG_13870 yhbY ribosome assembly RNA-binding protein YhbY low > 61
Enterobacter sp. TBS_079 0.37 MPMX20_04052 hypothetical protein 0.80 MPMX20_04084 RNA-binding protein YhbY low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF1519 Predicted endonuclease distantly related to archaeal Holliday junction resolvase 0.82 GFF2921 FIG004454: RNA binding protein low > 78
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_2107 TIGR00252 family protein 0.58 B158DRAFT_0633 putative RNA-binding protein, YhbY family low > 40
Shewanella loihica PV-4 0.37 Shew_0226 hypothetical protein (RefSeq) 0.76 Shew_2836 hypothetical protein (RefSeq) — —
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_1641 Predicted endonuclease distantly related to archaeal Holliday junction resolvase 0.40 PfGW456L13_5096 FIG004454: RNA binding protein low > 87
Alteromonas macleodii MIT1002 0.36 MIT1002_03115 hypothetical protein 0.69 MIT1002_01863 RNA-binding protein low > 70
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_955 Predicted endonuclease distantly related to archaeal Holliday junction resolvase 0.41 Pf1N1B4_1169 FIG004454: RNA binding protein — —
Pseudomonas sp. DMC3 0.35 GFF4430 hypothetical protein 0.39 GFF4980 RNA-binding protein low > 89
Pseudomonas sp. RS175 0.35 PFR28_03599 hypothetical protein 0.40 PFR28_00080 RNA-binding protein YhbY — —
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_17100 hypothetical protein 0.40 AO356_07465 RNA-binding protein — —
Pantoea agglomerans CFBP13505 P0401 0.35 PagCFBP13505_RS11440 YraN family protein 0.82 PagCFBP13505_RS09170 ribosome assembly RNA-binding protein YhbY low > 74
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_5344 Predicted endonuclease distantly related to archaeal Holliday junction resolvase 0.41 Pf6N2E2_3361 FIG004454: RNA binding protein — —
Methylophilus sp. DMC18 0.34 GFF2449 hypothetical protein 0.50 GFF315 RNA-binding protein low > 43
Pseudomonas aeruginosa MRSN321 0.34 DY961_RS24355 YraN family protein 0.42 DY961_RS09520 yhbY;go_component=cytoplasm|0005737||IEA;go_function=RNA ribosome assembly RNA-binding protein YhbY low > 100
Pseudomonas aeruginosa PUPa3 0.34 DQ20_RS56815 YraN family protein 0.42 DQ20_RS52515 yhbY;go_component=cytoplasm|0005737||IEA;go_function=RNA ribosome assembly RNA-binding protein YhbY low > 101
Pantoea sp. MT58 0.34 IAI47_02840 YraN family protein 0.81 IAI47_17075 ribosome assembly RNA-binding protein YhbY low > 76
Pseudomonas stutzeri RCH2 0.33 Psest_3272 TIGR00252 family protein 0.40 Psest_0971 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein — —
Lysobacter sp. OAE881 0.33 ABIE51_RS04685 YraN family protein 0.49 ABIE51_RS06515 ribosome assembly RNA-binding protein YhbY low > 62
Pseudomonas fluorescens SBW25 0.33 PFLU_RS04645 YraN family protein 0.42 PFLU_RS25865 YhbY family RNA-binding protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS04645 YraN family protein 0.42 PFLU_RS25865 YhbY family RNA-binding protein low > 109
Pseudomonas segetis P6 0.33 ACVTMO_RS18935 YraN family protein 0.43 ACVTMO_RS05900 yhbY ribosome assembly RNA-binding protein YhbY low > 75
Pseudomonas simiae WCS417 0.33 PS417_04580 hypothetical protein 0.42 PS417_24025 RNA-binding protein — —
Shewanella oneidensis MR-1 0.32 SO0299 conserved hypothetical protein TIGR00252 (NCBI ptt file) 0.76 SO1195 conserved hypothetical protein TIGR00253 (NCBI ptt file) — —
Pseudomonas putida KT2440 0.32 PP_1324 putative endonuclease distantly related to archaeal Holliday junction resolvase 0.44 PP_4720 putative RNA binding protein low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_4114 Protein of unknown function UPF0102 0.41 Psyr_4189 Protein of unknown function UPF0044 0.39 15
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_4114 Protein of unknown function UPF0102 0.41 Psyr_4189 Protein of unknown function UPF0044 — —
Pseudomonas sp. BP01 0.32 JOY50_RS15175 YraN family protein 0.44 JOY50_RS26780 YhbY family RNA-binding protein low > 84
Shewanella sp. ANA-3 0.32 Shewana3_3881 hypothetical protein (RefSeq) 0.76 Shewana3_1021 hypothetical protein (RefSeq) low > 73
Pseudomonas orientalis W4I3 0.32 QF045_RS07570 YraN family protein 0.41 QF045_RS26280 YhbY family RNA-binding protein low > 93
Pseudomonas sp. SVBP6 0.31 COO64_RS11835 YraN family protein 0.45 COO64_RS15225 yhbY ribosome assembly RNA-binding protein YhbY low > 93
Fusobacterium nucleatum SB010 0.31 HUW76_08565 YraN family protein 0.29 HUW76_04210 ribosome assembly RNA-binding protein YhbY 0.80 14
Marinobacter adhaerens HP15 0.31 HP15_551 hypothetical protein 0.48 HP15_3075 RNA-binding, CRM domain, prokaryote low > 73
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.4374.1 Predicted endonuclease distantly related to archaeal Holliday junction resolvase 0.46 Xcc-8004.3126.1 FIG004454: RNA binding protein — —
Shewanella amazonensis SB2B 0.30 Sama_3355 hypothetical protein (RefSeq) 0.78 Sama_0952 RNA-binding protein (RefSeq) low > 62
Acinetobacter radioresistens SK82 0.27 MPMX26_02280 hypothetical protein 0.45 MPMX26_00770 RNA-binding protein — —
Pseudomonas lactucae CFBP13502 0.25 GEMAOFIL_01119 hypothetical protein 0.42 GEMAOFIL_04955 RNA-binding protein — —

Not shown: 16 genomes with orthologs for CSW01_03080 only; 6 genomes with orthologs for CSW01_03335 only