Conservation of cofitness between CSW01_00480 and CSW01_03160 in Vibrio cholerae E7946 ATCC 55056

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00480 MATE family efflux transporter 1.0 CSW01_03160 DNA/RNA nuclease SfsA 0.41 17
Shewanella amazonensis SB2B 0.42 Sama_3501 DNA-damage-inducible protein F (RefSeq) 0.50 Sama_0781 sugar fermentation stimulation protein A (RefSeq) low > 62
Shewanella oneidensis MR-1 0.41 SO4617 dinF DNA-damage-inducible protein F (NCBI ptt file) 0.51 SO0875 sfsA sugar fermentation stimulation protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.41 Shew_0107 MATE efflux family protein (RefSeq) 0.55 Shew_3128 sugar fermentation stimulation protein (RefSeq) low > 60
Serratia liquefaciens MT49 0.40 IAI46_23000 MATE family efflux transporter DinF 0.58 IAI46_21205 DNA/RNA nuclease SfsA low > 87
Enterobacter asburiae PDN3 0.39 EX28DRAFT_4268 putative efflux protein, MATE family 0.56 EX28DRAFT_3735 sugar fermentation stimulation protein low > 76
Shewanella sp. ANA-3 0.39 Shewana3_4001 MATE efflux family protein (RefSeq) 0.54 Shewana3_3403 sugar fermentation stimulation protein A (RefSeq) low > 73
Escherichia coli BW25113 0.39 b4044 dinF DNA-damage-inducible SOS response protein (NCBI) 0.57 b0146 sfsA sugar fermentation stimulation protein A (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_03999 DNA damage-inducible protein F 0.57 OHPLBJKB_03516 Sugar fermentation stimulation protein A low > 74
Escherichia coli BL21 0.39 ECD_03916 oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein 0.56 ECD_00145 sugar fermentation stimulation protein A low > 61
Escherichia coli ECRC62 0.39 BNILDI_06305 dinF MATE family efflux transporter DinF 0.57 BNILDI_08985 sfsA DNA/RNA nuclease SfsA low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF1413 DNA-damage-inducible protein F 0.56 GFF86 Sugar/maltose fermentation stimulation protein homolog low > 78
Escherichia coli ECOR27 0.39 NOLOHH_05215 dinF MATE family efflux transporter DinF 0.57 NOLOHH_02685 sfsA DNA/RNA nuclease SfsA low > 76
Pantoea sp. MT58 0.38 IAI47_17885 MATE family efflux transporter DinF 0.58 IAI47_15630 DNA/RNA nuclease SfsA low > 76
Escherichia coli ECRC100 0.38 OKFHMN_13060 dinF MATE family efflux transporter DinF 0.57 OKFHMN_10340 sfsA DNA/RNA nuclease SfsA low > 79
Enterobacter sp. TBS_079 0.38 MPMX20_00260 DNA damage-inducible protein F 0.56 MPMX20_00832 Sugar fermentation stimulation protein A low > 85
Escherichia coli ECRC101 0.38 MCAODC_03560 dinF MATE family efflux transporter DinF 0.57 MCAODC_00855 sfsA DNA/RNA nuclease SfsA low > 87
Escherichia coli ECRC99 0.38 KEDOAH_15100 dinF MATE family efflux transporter DinF 0.57 KEDOAH_17815 sfsA DNA/RNA nuclease SfsA — —
Escherichia coli ECRC98 0.38 JDDGAC_16685 dinF MATE family efflux transporter DinF 0.57 JDDGAC_13935 sfsA DNA/RNA nuclease SfsA low > 87
Escherichia coli ECRC102 0.38 NIAGMN_10810 dinF MATE family efflux transporter DinF 0.57 NIAGMN_08190 sfsA DNA/RNA nuclease SfsA low > 80
Rahnella sp. WP5 0.38 EX31_RS11850 MATE family efflux transporter DinF 0.60 EX31_RS03245 DNA/RNA nuclease SfsA low > 89
Pantoea agglomerans CFBP13505 P0401 0.38 PagCFBP13505_RS21210 MATE family efflux transporter DinF 0.57 PagCFBP13505_RS13375 DNA/RNA nuclease SfsA low > 74
Escherichia coli Nissle 1917 0.38 ECOLIN_RS23340 MATE family efflux transporter DinF 0.57 ECOLIN_RS00820 DNA/RNA nuclease SfsA — —
Klebsiella michiganensis M5al 0.38 BWI76_RS01880 MATE family efflux transporter 0.59 BWI76_RS05020 sugar fermentation stimulation protein SfsA low > 92
Escherichia fergusonii Becca 0.38 EFB2_04559 DNA damage-inducible protein F 0.56 EFB2_03898 Sugar fermentation stimulation protein A low > 86
Klebsiella pneumoniae MKP103 0.38 KDGMDA_10335 MATE family efflux transporter DinF 0.59 KDGMDA_13275 DNA/RNA nuclease SfsA low > 95
Escherichia coli ECOR38 0.37 HEPCGN_11580 dinF MATE family efflux transporter DinF 0.57 HEPCGN_08290 sfsA DNA/RNA nuclease SfsA low > 88
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_3500 DNA-damage-inducible protein F 0.40 Pf6N2E2_5162 Sugar/maltose fermentation stimulation protein homolog low > 103
Pseudomonas sp. DMC3 0.37 GFF3325 DNA damage-inducible protein F 0.40 GFF4036 Sugar fermentation stimulation protein A low > 89
Marinobacter adhaerens HP15 0.37 HP15_3770 MATE efflux family protein 0.45 HP15_333 sugar fermentation stimulation protein-like protein low > 73
Pseudomonas fluorescens FW300-N1B4 0.37 Pf1N1B4_1292 DNA-damage-inducible protein F 0.41 Pf1N1B4_2864 Sugar/maltose fermentation stimulation protein homolog low > 87
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_0674 putative efflux protein, MATE family 0.48 B158DRAFT_0055 sugar fermentation stimulation protein 0.32 33
Pseudomonas syringae pv. syringae B728a 0.36 Psyr_4384 Multi antimicrobial extrusion protein MatE 0.42 Psyr_0837 Sugar fermentation stimulation protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.36 Psyr_4384 Multi antimicrobial extrusion protein MatE 0.42 Psyr_0837 Sugar fermentation stimulation protein low > 86
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_40 DNA-damage-inducible protein F 0.42 PfGW456L13_1530 Sugar/maltose fermentation stimulation protein homolog low > 87
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_13735 MATE family efflux transporter 0.43 AO353_14430 XRE family transcriptional regulator low > 101
Erwinia amylovora T8 0.35 OLJFJH_03575 MATE family efflux transporter DinF 0.58 OLJFJH_00760 DNA/RNA nuclease SfsA low > 58
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_08140 MATE family efflux transporter 0.40 AO356_16105 XRE family transcriptional regulator low > 104
Pseudomonas stutzeri RCH2 0.34 Psest_3364 putative efflux protein, MATE family 0.41 Psest_1005 sugar fermentation stimulation protein low > 67
Pseudomonas simiae WCS417 0.34 PS417_03010 XRE family transcriptional regulator 0.39 PS417_23865 XRE family transcriptional regulator low > 88
Pseudomonas orientalis W4I3 0.34 QF045_RS06045 MATE family efflux transporter 0.41 QF045_RS26125 DNA/RNA nuclease SfsA low > 93
Alteromonas macleodii MIT1002 0.34 MIT1002_04023 DNA-damage-inducible protein F 0.39 MIT1002_03689 Sugar fermentation stimulation protein A low > 70
Pseudomonas putida KT2440 0.34 PP_0569 MATE efflux family protein 0.43 PP_4691 sugar fermentation stimulation protein A low > 96
Pseudomonas lactucae CFBP13502 0.34 GEMAOFIL_00834 DNA damage-inducible protein F 0.40 GEMAOFIL_04924 Sugar fermentation stimulation protein A low > 96
Pseudomonas sp. BP01 0.33 JOY50_RS23180 MATE family efflux transporter 0.41 JOY50_RS27705 sfsA DNA/RNA nuclease SfsA low > 84
Pseudomonas sp. RS175 0.33 PFR28_05231 DNA damage-inducible protein F 0.40 PFR28_03712 Sugar fermentation stimulation protein A low > 88
Pseudomonas segetis P6 0.33 ACVTMO_RS20250 MATE family efflux transporter 0.42 ACVTMO_RS06245 sfsA DNA/RNA nuclease SfsA low > 75
Pseudomonas aeruginosa PA14 0.32 IKLFDK_29470 DNA-damage-inducible protein F 0.42 IKLFDK_30010 DNA/RNA nuclease SfsA low > 98
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS03090 MATE family efflux transporter 0.41 PFLU_RS25705 DNA/RNA nuclease SfsA low > 109
Pseudomonas fluorescens SBW25 0.32 PFLU_RS03090 MATE family efflux transporter 0.41 PFLU_RS25705 DNA/RNA nuclease SfsA low > 109
Dinoroseobacter shibae DFL-12 0.32 Dshi_0845 MATE efflux family protein (RefSeq) 0.31 Dshi_0118 sugar fermentation stimulation protein (RefSeq) low > 64
Pseudomonas sp. SVBP6 0.31 COO64_RS18420 MATE family efflux transporter 0.41 COO64_RS15060 sfsA DNA/RNA nuclease SfsA low > 93
Phaeobacter inhibens DSM 17395 0.31 PGA1_c12130 DNA-damage-inducible protein F 0.33 PGA1_c29210 sugar fermentation stimulation protein A low > 62
Pseudomonas aeruginosa PUPa3 0.31 DQ20_RS52175 MATE family efflux transporter 0.42 DQ20_RS52690 sfsA;go_function=DNA DNA/RNA nuclease SfsA low > 101
Pseudomonas aeruginosa MRSN321 0.30 DY961_RS09875 MATE family efflux transporter 0.42 DY961_RS09340 sfsA;go_function=DNA DNA/RNA nuclease SfsA low > 100
Xanthobacter sp. DMC5 0.29 GFF148 DNA damage-inducible protein F 0.36 GFF114 Sugar fermentation stimulation protein A — —
Pseudomonas sp. S08-1 0.27 OH686_07530 MATE efflux family protein 0.42 OH686_17290 sugar fermentation stimulation protein low > 80
Agrobacterium fabrum C58 0.25 Atu5428 DNA-damage-inducible protein F 0.36 Atu1605 sugar fermentation stimulation protein low > 89
Sinorhizobium meliloti 1021 0.25 SMc02244 transmembrane protein 0.30 SMc00297 sugar fermentation stimulation protein A low > 103
Synechocystis sp000284455 PCC 6803 0.18 SGL_RS06455 guanitoxin biosynthesis MATE family efflux transporter GntT 0.32 SGL_RS07730 DNA/RNA nuclease SfsA low > 52

Not shown: 19 genomes with orthologs for CSW01_00480 only; 15 genomes with orthologs for CSW01_03160 only