Conservation of cofitness between CSW01_10130 and CSW01_02960 in Vibrio cholerae E7946 ATCC 55056

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC 1.0 CSW01_02960 DedA family protein 0.47 11
Klebsiella michiganensis M5al 0.64 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.38 BWI76_RS22125 membrane protein low > 92
Enterobacter sp. TBS_079 0.64 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.34 MPMX20_03569 Inner membrane protein YqaA low > 85
Enterobacter asburiae PDN3 0.64 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.39 EX28DRAFT_2775 Predicted membrane protein low > 76
Klebsiella pneumoniae MKP103 0.63 KDGMDA_18660 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.36 KDGMDA_02795 SNARE associated Golgi protein low > 95
Rahnella sp. WP5 0.63 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.35 EX31_RS07755 DedA family protein low > 89
Escherichia coli ECOR27 0.63 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.37 NOLOHH_12595 ygaA SNARE associated Golgi protein low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.63 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.38 OHPLBJKB_01044 Inner membrane protein YqaA low > 74
Escherichia fergusonii Becca 0.63 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.38 EFB2_01237 Inner membrane protein YqaA low > 86
Escherichia coli BL21 0.63 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.38 ECD_02544 COG1238 family inner membrane protein low > 61
Escherichia coli ECOR38 0.63 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 HEPCGN_19950 yqaA Inner membrane protein YqaA low > 88
Escherichia coli BW25113 0.63 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.38 b2689 yqaA conserved inner membrane protein (NCBI) low > 76
Escherichia coli ECRC62 0.63 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.37 BNILDI_11155 ygaA SNARE associated Golgi protein low > 75
Escherichia coli Nissle 1917 0.63 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 ECOLIN_RS14995 YqaA family protein low > 55
Escherichia coli ECRC100 0.63 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 OKFHMN_20755 yqaA Inner membrane protein YqaA low > 79
Escherichia coli ECRC101 0.63 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 MCAODC_11280 yqaA Inner membrane protein YqaA low > 88
Escherichia coli ECRC99 0.63 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 KEDOAH_07380 yqaA Inner membrane protein YqaA — —
Escherichia coli ECRC98 0.63 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 JDDGAC_24420 yqaA Inner membrane protein YqaA low > 87
Escherichia coli ECRC102 0.63 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 NIAGMN_18525 yqaA Inner membrane protein YqaA low > 80
Pectobacterium carotovorum WPP14 0.63 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.37 HER17_RS05090 DedA family protein low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.62 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.33 GFF1598 Putative membrane protein low > 78
Pantoea agglomerans CFBP13505 P0401 0.62 PagCFBP13505_RS05230 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.34 PagCFBP13505_RS16625 DedA family protein low > 74
Pantoea sp. MT58 0.62 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.34 IAI47_04345 DedA family protein low > 76
Erwinia tracheiphila SCR3 0.62 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.31 LU632_RS15695 DedA family protein low > 74
Erwinia tracheiphila HP pepo 2.2 0.62 IJEDHG_00715 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.30 IJEDHG_01565 DedA family protein 0.67 28
Serratia liquefaciens MT49 0.61 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.34 IAI46_03890 DedA family protein low > 86
Shewanella sp. ANA-3 0.61 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) 0.40 Shewana3_3162 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.60 Shew_1594 RluA family pseudouridine synthase (RefSeq) 0.35 Shew_1225 hypothetical protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.60 Sama_1988 pseudouridylate synthase (RefSeq) 0.33 Sama_1056 hypothetical protein (RefSeq) low > 62
Dickeya dianthicola ME23 0.59 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.37 DZA65_RS17405 DedA family protein low > 75
Dickeya dianthicola 67-19 0.59 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.37 HGI48_RS16310 DedA family protein low > 71
Dickeya dadantii 3937 0.59 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.36 DDA3937_RS16200 DedA family protein low > 74
Alteromonas macleodii MIT1002 0.57 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C 0.24 MIT1002_02311 Inner membrane protein YqaA low > 70
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_1770 ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) 0.30 B158DRAFT_1700 Predicted membrane protein low > 40
Pseudomonas sp. BP01 0.50 JOY50_RS16830 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.28 JOY50_RS12710 YqaA family protein low > 84
Pseudomonas stutzeri RCH2 0.50 Psest_1680 pseudouridine synthase, RluA family 0.29 Psest_2449 Predicted membrane protein — —
Pseudomonas sp. S08-1 0.50 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase 0.21 OH686_00760 probable membrane protein low > 80
Pseudomonas putida KT2440 0.50 PP_1906 ribosomal large subunit pseudouridine synthase C 0.27 PP_2202 conserved membrane protein of unknown function — —
Pseudomonas segetis P6 0.49 MPMX49_02072 Ribosomal large subunit pseudouridine synthase C 0.26 MPMX49_04127 Inner membrane protein YqaA low > 75
Pseudomonas sp. SVBP6 0.49 COO64_RS05845 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.29 COO64_RS17390 YqaA family protein — —
Pseudomonas sp. RS175 0.49 PFR28_03018 Ribosomal large subunit pseudouridine synthase C 0.30 PFR28_01997 Inner membrane protein YqaA low > 88
Pseudomonas aeruginosa PA14 0.48 IKLFDK_15135 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.26 IKLFDK_13885 SNARE associated Golgi protein — —
Pseudomonas fluorescens FW300-N2C3 0.48 AO356_20125 23S rRNA pseudouridylate synthase 0.30 AO356_26040 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.31 Pf6N2E2_1081 probable membrane protein YPO3302 low > 103
Pseudomonas sp. DMC3 0.48 GFF4765 Ribosomal large subunit pseudouridine synthase C 0.28 GFF3479 Inner membrane protein YqaA low > 89
Pseudomonas lactucae CFBP13502 0.47 GEMAOFIL_04440 Ribosomal large subunit pseudouridine synthase C 0.31 GEMAOFIL_03182 Inner membrane protein YqaA low > 93
Pseudomonas fluorescens SBW25 0.47 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.32 PFLU_RS16395 DedA family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.32 PFLU_RS16395 DedA family protein low > 109
Pseudomonas simiae WCS417 0.47 PS417_21480 23S rRNA pseudouridylate synthase 0.32 PS417_14465 membrane protein — —
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_01405 23S rRNA pseudouridylate synthase 0.29 AO353_23785 hypothetical protein low > 101
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.30 PfGW456L13_2963 probable membrane protein YPO3302 — —
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.27 Pf1N1B4_4690 probable membrane protein YPO3302 — —
Acidovorax sp. GW101-3H11 0.43 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.33 Ac3H11_3998 probable membrane protein YPO3302 low > 79
Variovorax sp. SCN45 0.43 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) 0.31 GFF2143 probable membrane protein YPO3302 low > 127
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.25 Xcc-8004.2662.1 probable membrane protein YPO3302 low > 74
Variovorax sp. OAS795 0.42 ABID97_RS08250 RluA family pseudouridine synthase 0.32 ABID97_RS24740 YqaA family protein low > 91
Acinetobacter baumannii LAC-4 0.41 RR41_RS16980 RluA family pseudouridine synthase 0.30 RR41_RS16005 DedA family protein low > 55
Dechlorosoma suillum PS 0.41 Dsui_2437 pseudouridine synthase, RluA family 0.30 Dsui_0735 putative membrane protein low > 51
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS14155 pseudouridine synthase 0.27 RR42_RS02375 membrane protein low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.32 GFF633 probable membrane protein YPO3302 low > 90
Acinetobacter radioresistens SK82 0.40 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C 0.30 MPMX26_00557 Inner membrane protein YqaA low > 36
Castellaniella sp019104865 MT123 0.38 ABCV34_RS08415 RluA family pseudouridine synthase 0.33 ABCV34_RS14415 YqaA family protein low > 48
Agrobacterium fabrum C58 0.27 Atu1471 ribosomal large subunit pseudouridine synthase C 0.30 Atu3182 hypothetical protein — —
Sinorhizobium meliloti 1021 0.26 SMc01275 ribosomal large subunit pseudouridine synthase C protein 0.24 SM_b21580 hypothetical protein low > 103

Not shown: 34 genomes with orthologs for CSW01_10130 only; 3 genomes with orthologs for CSW01_02960 only