| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_12705 | | RNA polymerase-associated protein RapA | 1.0 | CSW01_02455 | | YggS family pyridoxal phosphate enzyme | 0.64 | 7 |
| Serratia liquefaciens MT49 | 0.67 | IAI46_03275 | | RNA polymerase-associated protein RapA | 0.56 | IAI46_21410 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 87 |
| Dickeya dadantii 3937 | 0.65 | DDA3937_RS18235 | | RNA polymerase-associated protein RapA | 0.62 | DDA3937_RS17300 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.65 | GFF183 | | RNA polymerase associated protein RapA (EC 3.6.1.-) | 0.58 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 78 |
| Rahnella sp. WP5 | 0.65 | EX31_RS03745 | | RNA polymerase-associated protein RapA | 0.57 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 89 |
| Escherichia coli ECOR27 | 0.65 | NOLOHH_03145 | rapA | RNA polymerase-associated protein RapA | 0.58 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | low | > 76 |
| Escherichia coli ECRC98 | 0.65 | JDDGAC_14395 | rapA | RNA polymerase-associated protein RapA | 0.58 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | low | > 87 |
| Escherichia coli ECRC102 | 0.65 | NIAGMN_08650 | rapA | RNA polymerase-associated protein RapA | 0.58 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | low | > 80 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.65 | OHPLBJKB_03599 | | RNA polymerase-associated protein RapA | 0.58 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | low | > 74 |
| Escherichia coli ECRC62 | 0.65 | BNILDI_08460 | rapA | RNA polymerase-associated protein RapA | 0.58 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | low | > 75 |
| Escherichia coli ECRC99 | 0.65 | KEDOAH_17355 | rapA | RNA polymerase-associated protein RapA | 0.58 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli BW25113 | 0.65 | b0059 | hepA | ATP-dependent helicase HepA (NCBI) | 0.58 | b2951 | yggS | predicted enzyme (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.65 | ECD_00061 | | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase | 0.58 | ECD_02781 | | UPF0001 family protein, PLP-binding | low | > 61 |
| Escherichia coli ECRC100 | 0.65 | OKFHMN_10800 | rapA | RNA polymerase-associated protein RapA | 0.58 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | low | > 79 |
| Escherichia coli ECRC101 | 0.65 | MCAODC_01315 | rapA | RNA polymerase-associated protein RapA | 0.58 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | low | > 87 |
| Escherichia coli Nissle 1917 | 0.65 | ECOLIN_RS00315 | | RNA polymerase-associated protein RapA | 0.58 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | low | > 55 |
| Enterobacter sp. TBS_079 | 0.65 | MPMX20_00753 | | RNA polymerase-associated protein RapA | 0.56 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | low | > 85 |
| Dickeya dianthicola 67-19 | 0.65 | HGI48_RS18170 | | RNA polymerase-associated protein RapA | 0.61 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 71 |
| Klebsiella michiganensis M5al | 0.65 | BWI76_RS04570 | | RNA polymerase-associated protein RapA | 0.60 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | low | > 92 |
| Enterobacter asburiae PDN3 | 0.65 | EX28DRAFT_3651 | | Superfamily II DNA/RNA helicases, SNF2 family | 0.59 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | low | > 76 |
| Klebsiella pneumoniae MKP103 | 0.65 | KDGMDA_12795 | | RNA polymerase-associated protein RapA | 0.55 | KDGMDA_04615 | | YggS family pyridoxal phosphate enzyme | low | > 95 |
| Escherichia coli ECOR38 | 0.64 | HEPCGN_08790 | rapA | RNA polymerase-associated protein RapA | 0.58 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | low | > 88 |
| Escherichia fergusonii Becca | 0.64 | EFB2_03986 | | RNA polymerase-associated protein RapA | 0.58 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | low | > 86 |
| Dickeya dianthicola ME23 | 0.64 | DZA65_RS19310 | | RNA polymerase-associated protein RapA | 0.61 | DZA65_RS18435 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Pantoea agglomerans CFBP13505 P0401 | 0.64 | PagCFBP13505_RS12940 | | RNA polymerase-associated protein RapA | 0.59 | PagCFBP13505_RS16100 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 74 |
| Pantoea sp. MT58 | 0.64 | IAI47_16055 | | RNA polymerase-associated protein RapA | 0.58 | IAI47_03595 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.64 | HER17_RS02990 | | RNA polymerase-associated protein RapA | 0.61 | HER17_RS03810 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Erwinia amylovora T8 | 0.63 | OLJFJH_01340 | | RNA polymerase-associated protein RapA | 0.55 | OLJFJH_08530 | | YggS family pyridoxal phosphate enzyme | low | > 58 |
| Erwinia tracheiphila HP pepo 2.2 | 0.62 | IJEDHG_06075 | | RNA polymerase-associated protein RapA | 0.55 | IJEDHG_03450 | | YggS family pyridoxal phosphate enzyme | low | > 61 |
| Erwinia tracheiphila SCR3 | 0.62 | LU632_RS02805 | rapA | RNA polymerase-associated protein RapA | 0.55 | LU632_RS05460 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 73 |
| Shewanella sp. ANA-3 | 0.61 | Shewana3_0574 | | ATP-dependent helicase HepA (RefSeq) | 0.56 | Shewana3_1194 | | hypothetical protein (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.61 | SO0575 | hepA | RNA polymerase-associated protein HepA (NCBI ptt file) | 0.56 | SO3352 | | conserved hypothetical protein TIGR00044 (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.60 | Sama_3131 | | ATP-dependent helicase HepA (RefSeq) | 0.48 | Sama_2477 | | hypothetical protein (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.60 | Shew_0457 | | ATP-dependent helicase HepA (RefSeq) | 0.55 | Shew_1137 | | alanine racemase domain-containing protein (RefSeq) | low | > 60 |
| Pseudomonas sp. S08-1 | 0.47 | OH686_19955 | | RNA polymerase associated protein RapA | 0.50 | OH686_10975 | | Pyridoxal phosphate-containing protein YggS | low | > 80 |
| Pseudomonas sp. RS175 | 0.46 | PFR28_00612 | | RNA polymerase-associated protein RapA | 0.49 | PFR28_04242 | | Pyridoxal phosphate homeostasis protein | low | > 88 |
| Pseudomonas sp. DMC3 | 0.46 | GFF2193 | | RNA polymerase-associated protein RapA | 0.52 | GFF209 | | Pyridoxal phosphate homeostasis protein | low | > 89 |
| Pseudomonas fluorescens FW300-N2C3 | 0.46 | AO356_04975 | | RNA polymerase-associated protein RapA | 0.51 | AO356_13425 | | hypothetical protein | low | > 104 |
| Pseudomonas lactucae CFBP13502 | 0.46 | GEMAOFIL_01492 | | RNA polymerase-associated protein RapA | 0.50 | GEMAOFIL_05482 | | Pyridoxal phosphate homeostasis protein | low | > 96 |
| Pseudomonas fluorescens FW300-N2E2 | 0.46 | Pf6N2E2_2845 | | RNA polymerase associated protein RapA (EC 3.6.1.-) | 0.49 | Pf6N2E2_4601 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 103 |
| Pseudomonas sp. SVBP6 | 0.46 | COO64_RS17145 | rapA | RNA polymerase-associated protein RapA | 0.47 | COO64_RS13000 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 93 |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_17155 | | RNA polymerase-associated protein RapA | 0.47 | AO353_08160 | | hypothetical protein | low | > 101 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.46 | Psyr_3842 | | SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit | 0.49 | Psyr_0477 | | Protein of unknown function UPF0001 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.46 | Psyr_3842 | | SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit | 0.49 | Psyr_0477 | | Protein of unknown function UPF0001 | low | > 86 |
| Pseudomonas segetis P6 | 0.46 | MPMX49_03288 | | RNA polymerase-associated protein RapA | 0.50 | MPMX49_00611 | | Pyridoxal phosphate homeostasis protein | low | > 75 |
| Pseudomonas fluorescens FW300-N1B4 | 0.46 | Pf1N1B4_3224 | | RNA polymerase associated protein RapA (EC 3.6.1.-) | 0.51 | Pf1N1B4_2342 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.46 | PfGW456L13_4599 | | RNA polymerase associated protein RapA (EC 3.6.1.-) | 0.52 | PfGW456L13_1011 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 87 |
| Pseudomonas orientalis W4I3 | 0.46 | QF045_RS09435 | | RNA polymerase-associated protein RapA | 0.50 | QF045_RS01125 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 93 |
| Pseudomonas fluorescens SBW25 | 0.46 | PFLU_RS06675 | | RNA polymerase-associated protein RapA | 0.49 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 109 |
| Pseudomonas stutzeri RCH2 | 0.46 | Psest_1327 | | Superfamily II DNA/RNA helicases, SNF2 family | 0.49 | Psest_0284 | | pyridoxal phosphate enzyme, YggS family | low | > 67 |
| Pseudomonas fluorescens SBW25-INTG | 0.46 | PFLU_RS06675 | | RNA polymerase-associated protein RapA | 0.49 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 109 |
| Pseudomonas aeruginosa PUPa3 | 0.46 | DQ20_RS40690 | rapA;go_function=ATP | RNA polymerase-associated protein RapA | 0.48 | DQ20_RS37350 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.46 | DY961_RS00330 | rapA;go_function=ATP | RNA polymerase-associated protein RapA | 0.48 | DY961_RS21950 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 100 |
| Pseudomonas putida KT2440 | 0.46 | PP_1145 | | RNA polymerase-associated protein RapA | 0.49 | PP_5094 | | putative enzyme with PLP binding domain | low | > 96 |
| Pseudomonas sp. BP01 | 0.46 | JOY50_RS24235 | rapA | RNA polymerase-associated protein RapA | 0.50 | JOY50_RS20910 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 84 |
| Pseudomonas aeruginosa PA14 | 0.46 | IKLFDK_16965 | | RNA polymerase-associated protein RapA | 0.47 | IKLFDK_23450 | | Pyridoxal phosphate homeostasis protein | low | > 98 |
| Pseudomonas simiae WCS417 | 0.45 | PS417_06645 | | RNA polymerase-associated protein RapA | 0.50 | PS417_26725 | | hypothetical protein | low | > 88 |
| Alteromonas macleodii MIT1002 | 0.44 | MIT1002_00659 | | RNA polymerase-associated protein RapA | 0.49 | MIT1002_03061 | | pyridoxal phosphate enzyme, YggS family | low | > 70 |
| Marinobacter adhaerens HP15 | 0.41 | HP15_3376 | | RNA polymerase-associated protein RapA | 0.42 | HP15_288 | | alanine racemase domain protein | low | > 73 |
| Acinetobacter baumannii LAC-4 | 0.38 | RR41_RS05200 | | RNA polymerase-associated protein RapA | 0.43 | RR41_RS14795 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 55 |
| Acinetobacter radioresistens SK82 | 0.37 | MPMX26_01027 | | RNA polymerase-associated protein RapA | 0.47 | MPMX26_02404 | | Pyridoxal phosphate homeostasis protein | low | > 36 |
| Rhodanobacter sp. FW510-T8 | 0.32 | OKGIIK_09865 | rapA | RNA polymerase-associated protein RapA | 0.25 | OKGIIK_09885 | | Pyridoxal phosphate homeostasis protein | low | > 53 |
| Rhodanobacter denitrificans FW104-10B01 | 0.31 | LRK54_RS02885 | | RNA polymerase-associated protein RapA | 0.27 | LRK54_RS02905 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.31 | LRK55_RS02635 | | RNA polymerase-associated protein RapA | 0.27 | LRK55_RS02655 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 63 |
| Rhodanobacter sp000427505 FW510-R12 | 0.31 | LRK53_RS07105 | | RNA polymerase-associated protein RapA | 0.27 | LRK53_RS07085 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.31 | ABZR86_RS09245 | | RNA polymerase-associated protein RapA | 0.27 | ABZR86_RS09305 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
Not shown: 0 genomes with orthologs for CSW01_12705 only; 56 genomes with orthologs for CSW01_02455 only