Conservation of cofitness between CSW01_04635 and CSW01_01875 in Vibrio cholerae E7946 ATCC 55056

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04635 methionine ABC transporter substrate-binding protein MetQ 1.0 CSW01_01875 hypothetical protein 0.56 16
Klebsiella pneumoniae MKP103 0.71 KDGMDA_13605 methionine ABC transporter substrate-binding lipoprotein MetQ 0.64 KDGMDA_06760 Uncharacterized protein YheO low > 95
Escherichia fergusonii Becca 0.71 EFB2_03846 D-methionine-binding lipoprotein MetQ 0.64 EFB2_00477 Transcriptional regulator DauR low > 86
Escherichia coli Nissle 1917 0.71 ECOLIN_RS01085 methionine ABC transporter substrate-binding lipoprotein MetQ 0.64 ECOLIN_RS19165 transcriptional regulator — —
Escherichia coli ECOR38 0.71 HEPCGN_08000 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.64 HEPCGN_16130 yheO Uncharacterized protein YheO low > 88
Escherichia coli BW25113 0.71 b0197 metQ DL-methionine transporter subunit (NCBI) 0.64 b3346 yheO orf, hypothetical protein (VIMSS) low > 76
Escherichia coli ECRC62 0.71 BNILDI_09265 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.64 BNILDI_02420 yheO Uncharacterized protein YheO low > 75
Erwinia amylovora T8 0.71 OLJFJH_00490 methionine ABC transporter substrate-binding protein MetQ 0.66 OLJFJH_03930 Uncharacterized protein YheO low > 58
Escherichia coli BL21 0.71 ECD_00196 DL-methionine transporter subunit 0.64 ECD_03197 putative PAS domain-containing DNA-binding transcriptional regulator low > 61
Escherichia coli ECOR27 0.71 NOLOHH_02405 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.64 NOLOHH_09100 yheO Uncharacterized protein YheO low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_03464 D-methionine-binding lipoprotein MetQ 0.64 OHPLBJKB_00357 Transcriptional regulator DauR low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF23 Methionine ABC transporter substrate-binding protein 0.64 GFF3726 YheO-like PAS domain low > 78
Dickeya dadantii 3937 0.71 DDA3937_RS16855 MetQ/NlpA family lipoprotein 0.66 DDA3937_RS19340 transcriptional regulator low > 74
Escherichia coli ECRC101 0.71 MCAODC_00575 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.64 MCAODC_07830 yheO Uncharacterized protein YheO low > 87
Pectobacterium carotovorum WPP14 0.71 HER17_RS04370 MetQ/NlpA family lipoprotein 0.65 HER17_RS02010 transcriptional regulator low > 75
Escherichia coli ECRC100 0.71 OKFHMN_10060 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.64 OKFHMN_17300 yheO Uncharacterized protein YheO low > 79
Escherichia coli ECRC102 0.71 NIAGMN_07910 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.64 NIAGMN_15070 yheO Uncharacterized protein YheO low > 80
Escherichia coli ECRC98 0.71 JDDGAC_13655 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.64 JDDGAC_20930 yheO Uncharacterized protein YheO low > 87
Rahnella sp. WP5 0.71 EX31_RS12890 MetQ/NlpA family lipoprotein 0.66 EX31_RS04470 transcriptional regulator low > 89
Serratia liquefaciens MT49 0.71 IAI46_20085 MetQ/NlpA family lipoprotein 0.66 IAI46_23490 transcriptional regulator low > 87
Enterobacter asburiae PDN3 0.71 EX28DRAFT_3785 lipoprotein, YaeC family 0.64 EX28DRAFT_4184 Uncharacterized protein conserved in bacteria low > 76
Enterobacter sp. TBS_079 0.71 MPMX20_00881 D-methionine-binding lipoprotein MetQ 0.64 MPMX20_04239 Transcriptional regulator DauR low > 85
Klebsiella michiganensis M5al 0.71 BWI76_RS05355 methionine ABC transporter substrate-binding protein MetQ 0.64 BWI76_RS25905 hypothetical protein low > 92
Pantoea agglomerans CFBP13505 P0401 0.70 PagCFBP13505_RS13610 MetQ/NlpA family lipoprotein 0.65 PagCFBP13505_RS21525 transcriptional regulator low > 74
Dickeya dianthicola ME23 0.70 DZA65_RS18000 MetQ/NlpA family lipoprotein 0.66 DZA65_RS20560 transcriptional regulator low > 75
Escherichia coli ECRC99 0.70 KEDOAH_18095 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.64 KEDOAH_10840 yheO Uncharacterized protein YheO — —
Dickeya dianthicola 67-19 0.70 HGI48_RS16925 MetQ/NlpA family lipoprotein 0.66 HGI48_RS19440 transcriptional regulator low > 71
Erwinia tracheiphila SCR3 0.70 LU632_RS19830 MetQ/NlpA family lipoprotein 0.66 LU632_RS22710 transcriptional regulator low > 73
Pantoea sp. MT58 0.70 IAI47_15395 MetQ/NlpA family lipoprotein 0.65 IAI47_02055 transcriptional regulator low > 76
Erwinia tracheiphila HP pepo 2.2 0.69 IJEDHG_15315 nlpA ABC-type metal ion transport system periplasmic component/surface antigen 0.66 IJEDHG_12210 Uncharacterized protein YheO — —
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS04170 MetQ/NlpA family ABC transporter substrate-binding protein 0.15 QEN71_RS18565 PAS domain-containing protein low > 153
Acidovorax sp. GW101-3H11 0.46 Ac3H11_1311 Methionine ABC transporter substrate-binding protein 0.15 Ac3H11_38 YheO-like PAS domain — —
Rhizobium sp. OAE497 0.46 ABIE40_RS23105 MetQ/NlpA family ABC transporter substrate-binding protein 0.16 ABIE40_RS21180 PAS domain-containing protein low > 107
Sinorhizobium meliloti 1021 0.44 SMc03157 outer membrane lipoprotein transmembrane 0.13 SMc04327 hypothetical protein low > 103
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS04565 dioxygenase 0.14 RR42_RS11120 DNA-binding protein low > 128
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS04970 dioxygenase 0.14 HSERO_RS01425 DNA-binding protein low > 78
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS09540 MetQ/NlpA family ABC transporter substrate-binding protein 0.15 ABZR87_RS17665 PAS domain-containing protein low > 80
Paraburkholderia bryophila 376MFSha3.1 0.43 H281DRAFT_01982 D-methionine transport system substrate-binding protein 0.12 H281DRAFT_05884 Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains low > 103
Ralstonia solanacearum PSI07 0.43 RPSI07_RS08135 MetQ/NlpA family lipoprotein 0.15 RPSI07_RS06825 DNA-binding protein low > 81
Ralstonia solanacearum UW163 0.43 UW163_RS04460 MetQ/NlpA family lipoprotein 0.16 UW163_RS17980 DNA-binding protein — —
Paraburkholderia graminis OAS925 0.43 ABIE53_000686 D-methionine transport system substrate-binding protein 0.12 ABIE53_005722 putative transcriptional regulator YheO low > 113
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS09135 MetQ/NlpA family lipoprotein 0.16 RALBFv3_RS16625 DNA-binding protein low > 76
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS02715 dioxygenase 0.13 BPHYT_RS28105 hypothetical protein — —
Ralstonia solanacearum GMI1000 0.42 RS_RS16970 MetQ/NlpA family lipoprotein 0.16 RS_RS24435 DNA-binding protein — —
Fusobacterium nucleatum SB010 0.39 HUW76_06260 MetQ/NlpA family ABC transporter substrate-binding protein 0.17 HUW76_09955 PAS domain-containing protein low > 35
Variovorax sp. SCN45 0.36 GFF4137 Methionine ABC transporter substrate-binding protein 0.12 GFF2493 YheO-like PAS domain low > 127
Pseudomonas sp. S08-1 0.36 OH686_12270 Methionine ABC transporter substrate-binding protein 0.14 OH686_07030 YheO-like PAS domain low > 80
Pseudomonas sp. BP01 0.35 JOY50_RS20545 MetQ/NlpA family ABC transporter substrate-binding protein 0.16 JOY50_RS24520 transcriptional regulator low > 84
Pseudomonas aeruginosa PA14 0.34 IKLFDK_25885 methionine ABC transporter substrate-binding protein 0.15 IKLFDK_19905 Transcriptional regulator DauR low > 98
Pseudomonas fluorescens SBW25 0.34 PFLU_RS01080 ABC transporter substrate-binding protein 0.15 PFLU_RS13585 DNA-binding protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS01080 ABC transporter substrate-binding protein 0.15 PFLU_RS13585 DNA-binding protein 0.12 57
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_11520 methionine ABC transporter substrate-binding protein 0.14 AO356_17355 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_4174 Methionine ABC transporter substrate-binding protein 0.14 Pf6N2E2_5396 YheO-like PAS domain low > 103
Pseudomonas sp. SVBP6 0.33 COO64_RS12570 MetQ/NlpA family ABC transporter substrate-binding protein 0.15 COO64_RS25095 transcriptional regulator low > 93
Pseudomonas sp. DMC3 0.33 GFF642 D-methionine-binding lipoprotein MetQ 0.15 GFF1929 Transcriptional regulator DauR low > 89
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_604 Methionine ABC transporter substrate-binding protein 0.16 PfGW456L13_1693 YheO-like PAS domain low > 87
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_11595 methionine ABC transporter substrate-binding protein 0.16 AO353_04640 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_1714 Methionine ABC transporter substrate-binding protein 0.15 Pf1N1B4_923 YheO-like PAS domain low > 87
Pseudomonas sp. RS175 0.32 PFR28_04818 Methionine-binding lipoprotein MetQ 0.13 PFR28_03547 Transcriptional regulator DauR low > 88
Acinetobacter baumannii LAC-4 0.24 RR41_RS11625 MetQ/NlpA family ABC transporter substrate-binding protein 0.18 RR41_RS05440 PAS domain-containing protein low > 55

Not shown: 28 genomes with orthologs for CSW01_04635 only; 7 genomes with orthologs for CSW01_01875 only