Conservation of cofitness between CSW01_14665 and CSW01_01485 in Vibrio cholerae E7946 ATCC 55056

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_14665 ribokinase 1.0 CSW01_01485 transcriptional regulator 0.78 19
Serratia liquefaciens MT49 0.53 IAI46_25055 ribokinase 0.54 IAI46_23965 gluconate operon transcriptional repressor GntR 0.96 1
Escherichia fergusonii Becca 0.52 EFB2_04881 Ribokinase 0.52 EFB2_00382 HTH-type transcriptional regulator GntR low > 86
Escherichia coli BL21 0.52 ECD_03638 ribokinase 0.51 ECD_03289 d-gluconate inducible gluconate regulon transcriptional repressor low > 61
Escherichia coli Nissle 1917 0.52 ECOLIN_RS21570 ribokinase 0.52 ECOLIN_RS19675 gluconate operon transcriptional repressor GntR low > 55
Escherichia coli BW25113 0.52 b3752 rbsK ribokinase (NCBI) 0.52 b3438 gntR DNA-binding transcriptional repressor (NCBI) low > 76
Escherichia coli ECRC99 0.52 KEDOAH_13420 rbsK ribokinase 0.52 KEDOAH_11305 gntR gluconate operon transcriptional repressor GntR — —
Escherichia coli ECOR27 0.52 NOLOHH_06865 rbsK ribokinase 0.51 NOLOHH_08635 gntR gluconate operon transcriptional repressor GntR low > 76
Escherichia coli ECRC102 0.52 NIAGMN_12485 rbsK ribokinase 0.52 NIAGMN_14605 gntR gluconate operon transcriptional repressor GntR low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_04301 Ribokinase 0.52 OHPLBJKB_00264 HTH-type transcriptional regulator GntR low > 74
Escherichia coli ECRC100 0.52 OKFHMN_14730 rbsK ribokinase 0.52 OKFHMN_16835 gntR gluconate operon transcriptional repressor GntR low > 79
Escherichia coli ECRC98 0.52 JDDGAC_18350 rbsK ribokinase 0.52 JDDGAC_20465 gntR gluconate operon transcriptional repressor GntR low > 87
Escherichia coli ECRC101 0.52 MCAODC_05235 rbsK ribokinase 0.52 MCAODC_07365 gntR gluconate operon transcriptional repressor GntR low > 87
Escherichia coli ECRC62 0.52 BNILDI_04660 rbsK ribokinase 0.52 BNILDI_02870 gntR gluconate operon transcriptional repressor GntR low > 75
Escherichia coli ECOR38 0.52 HEPCGN_13440 rbsK ribokinase 0.52 HEPCGN_15660 gntR gluconate operon transcriptional repressor GntR low > 88
Pantoea sp. MT58 0.52 IAI47_00370 ribokinase 0.52 IAI47_01650 gluconate operon transcriptional repressor GntR low > 76
Pectobacterium carotovorum WPP14 0.52 HER17_RS21530 ribokinase 0.52 HER17_RS01450 gluconate operon transcriptional repressor GntR low > 75
Rahnella sp. WP5 0.52 EX31_RS06190 ribokinase 0.54 EX31_RS05060 gluconate operon transcriptional repressor GntR low > 89
Pantoea agglomerans CFBP13505 P0401 0.51 PagCFBP13505_RS18965 ribokinase 0.50 PagCFBP13505_RS18155 gluconate operon transcriptional repressor GntR low > 74
Klebsiella michiganensis M5al 0.51 BWI76_RS00290 Ribokinase (EC 2.7.1.15) (from data) 0.51 BWI76_RS26245 transcriptional regulator low > 92
Erwinia amylovora T8 0.51 OLJFJH_05410 ribokinase 0.56 OLJFJH_04280 gluconate operon transcriptional repressor GntR low > 58
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF1705 Ribokinase (EC 2.7.1.15) 0.49 GFF570 Gluconate utilization system Gnt-I transcriptional repressor low > 78
Dickeya dadantii 3937 0.51 DDA3937_RS00050 ribokinase 0.55 DDA3937_RS19785 gluconate operon transcriptional repressor GntR low > 74
Dickeya dianthicola 67-19 0.51 HGI48_RS21315 ribokinase 0.55 HGI48_RS19900 gluconate operon transcriptional repressor GntR low > 71
Dickeya dianthicola ME23 0.50 DZA65_RS22295 ribokinase 0.55 DZA65_RS20970 gluconate operon transcriptional repressor GntR 0.51 11
Klebsiella pneumoniae MKP103 0.50 KDGMDA_08895 ribokinase 0.51 KDGMDA_07120 gluconate operon transcriptional repressor GntR low > 95
Enterobacter sp. TBS_079 0.49 MPMX20_04615 Ribokinase 0.52 MPMX20_04319 HTH-type transcriptional regulator GntR low > 85
Enterobacter asburiae PDN3 0.49 EX28DRAFT_4028 ribokinase 0.51 EX28DRAFT_4274 transcriptional regulator, LacI family low > 76
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS20695 ribokinase 0.32 BPHYT_RS00410 LacI family transcription regulator low > 109
Pseudomonas aeruginosa MRSN321 0.39 DY961_RS28765 rbsK;go_function=ribokinase ribokinase 0.36 DY961_RS17990 gntR;inference=COORDINATES LacI family DNA-binding transcriptional regulator GntR low > 100
Pseudomonas aeruginosa PA14 0.39 IKLFDK_09520 ribokinase 0.36 IKLFDK_11375 LacI family DNA-binding transcriptional regulator GntR — —
Pseudomonas aeruginosa PUPa3 0.39 DQ20_RS38250 rbsK;go_function=ribokinase ribokinase 0.36 DQ20_RS59230 gntR;inference=COORDINATES LacI family DNA-binding transcriptional regulator GntR low > 101
Ralstonia solanacearum GMI1000 0.38 RS_RS05015 ribokinase 0.26 RS_RS24865 LacI family DNA-binding transcriptional regulator low > 80
Ralstonia solanacearum PSI07 0.37 RPSI07_RS19230 ribokinase 0.26 RPSI07_RS07575 LacI family DNA-binding transcriptional regulator low > 81
Ralstonia solanacearum IBSBF1503 0.37 RALBFv3_RS14235 ribokinase 0.24 RALBFv3_RS16125 GntR family transcriptional regulator — —
Ralstonia solanacearum UW163 0.37 UW163_RS11700 ribokinase 0.24 UW163_RS16860 GntR family transcriptional regulator — —
Ralstonia sp. UNC404CL21Col 0.37 ABZR87_RS09950 ribokinase 0.26 ABZR87_RS18255 LacI family DNA-binding transcriptional regulator low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_2155 Carbohydrate kinase, PfkB 0.32 Psyr_3336 transcriptional regulator, LacI family low > 86
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_2155 Carbohydrate kinase, PfkB 0.32 Psyr_3336 transcriptional regulator, LacI family low > 86
Pseudomonas simiae WCS417 0.36 PS417_18385 ribokinase 0.33 PS417_21990 LacI family transcriptional regulator — —
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS35905 ribokinase 0.29 QEN71_RS13585 LacI family DNA-binding transcriptional regulator low > 153
Pseudomonas sp. DMC3 0.35 GFF901 Ribokinase 0.33 GFF5268 HTH-type transcriptional regulator GntR low > 89
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_00950 Ribokinase (EC 2.7.1.15) (from data) 0.34 AO356_05065 LacI family transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_165 Ribokinase (EC 2.7.1.15) 0.34 Pf6N2E2_2865 Gluconate utilization system Gnt-I transcriptional repressor low > 103
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_3908 Ribokinase (EC 2.7.1.15) 0.34 PfGW456L13_1925 Gluconate utilization system Gnt-I transcriptional repressor low > 87
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_6031 Ribokinase (EC 2.7.1.15) (from data) 0.35 Pf1N1B4_558 Gluconate utilization system Gnt-I transcriptional repressor low > 87
Pseudomonas lactucae CFBP13502 0.34 GEMAOFIL_03907 Ribokinase 0.34 GEMAOFIL_04536 HTH-type transcriptional regulator GntR low > 96
Pseudomonas sp. RS175 0.34 PFR28_02733 Ribokinase 0.34 PFR28_00593 HTH-type transcriptional regulator GntR low > 88
Pseudomonas putida KT2440 0.34 PP_2458 ribokinase 0.31 PP_3415 Transcriptional regulator, LacI family low > 96
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS11500 Ribokinase (EC 2.7.1.15) (from data) 0.34 HSERO_RS05460 LacI family transcription regulator low > 78
Pseudomonas sp. SVBP6 0.34 COO64_RS10345 rbsK ribokinase 0.34 COO64_RS25590 LacI family DNA-binding transcriptional regulator low > 93
Pseudomonas orientalis W4I3 0.34 QF045_RS20535 ribokinase 0.34 QF045_RS24095 LacI family DNA-binding transcriptional regulator low > 93
Pseudomonas sp. BP01 0.33 JOY50_RS04290 rbsK ribokinase 0.31 JOY50_RS23605 LacI family DNA-binding transcriptional regulator low > 84
Pseudomonas fluorescens SBW25 0.33 PFLU_RS20360 ribokinase 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS20360 ribokinase 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_05229 ribokinase 0.30 H281DRAFT_05920 transcriptional regulator, LacI family low > 103
Variovorax sp. SCN45 0.32 GFF2136 Ribokinase (EC 2.7.1.15) 0.30 GFF7257 KEGG: LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor low > 127
Variovorax sp. OAS795 0.32 ABID97_RS24775 ribokinase 0.29 ABID97_RS01205 LacI family DNA-binding transcriptional regulator — —
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_20835 Ribokinase (EC 2.7.1.15) (from data) 0.33 AO353_03255 LacI family transcriptional regulator low > 101
Azospirillum sp. SherDot2 0.31 MPMX19_02769 Ribokinase 0.29 MPMX19_05332 HTH-type transcriptional regulator GntR low > 112
Acidovorax sp. GW101-3H11 0.31 Ac3H11_1839 Ribokinase (EC 2.7.1.15) 0.29 Ac3H11_3230 Gluconate utilization system Gnt-I transcriptional repressor low > 79
Dinoroseobacter shibae DFL-12 0.30 Dshi_1976 PfkB domain protein (RefSeq) 0.27 Dshi_3322 transcriptional regulator, LacI family (RefSeq) low > 64
Alteromonas macleodii MIT1002 0.30 MIT1002_02988 Ribokinase 0.31 MIT1002_03475 Gluconate utilization system GNT-I transcriptional repressor low > 70
Agrobacterium fabrum C58 0.27 Atu4847 ribokinase 0.28 Atu4685 LacI family transcriptional regulator low > 89
Sinorhizobium meliloti 1021 0.26 SMc01103 Ribokinase (EC 2.7.1.15) (from data) 0.29 SM_b20667 LacI family transcriptional regulator low > 103
Rhizobium sp. OAE497 0.23 ABIE40_RS01880 ribokinase 0.25 ABIE40_RS04445 LacI family DNA-binding transcriptional regulator low > 107
Phaeobacter inhibens DSM 17395 0.17 PGA1_c34980 putative pfkB family carbohydrate kinase 0.28 PGA1_c33870 putative HTH-type transcriptional regulator GntR low > 62

Not shown: 29 genomes with orthologs for CSW01_14665 only; 9 genomes with orthologs for CSW01_01485 only