Conservation of cofitness between CSW01_02515 and CSW01_01245 in Vibrio cholerae E7946 ATCC 55056

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02515 transketolase 1.0 CSW01_01245 lipopolysaccharide heptosyltransferase II 0.70 8
Escherichia fergusonii Becca 0.78 EFB2_00966 Transketolase 1 0.50 EFB2_00191 ADP-heptose--LPS heptosyltransferase 2 — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.78 OHPLBJKB_00781 Transketolase 1 0.50 OHPLBJKB_00080 ADP-heptose--LPS heptosyltransferase 2 — —
Escherichia coli ECRC98 0.78 JDDGAC_22955 tkt transketolase 0.50 JDDGAC_19320 rfaF ADP-heptose--LPS heptosyltransferase RfaF low > 87
Escherichia coli BL21 0.78 ECD_02765 transketolase 1, thiamine triphosphate-binding 0.50 ECD_03477 ADP-heptose:LPS heptosyltransferase II — —
Escherichia coli ECRC101 0.78 MCAODC_09845 tkt transketolase 0.50 MCAODC_06205 rfaF ADP-heptose--LPS heptosyltransferase RfaF — —
Escherichia coli ECRC102 0.78 NIAGMN_17090 tkt transketolase 0.50 NIAGMN_13455 rfaF ADP-heptose--LPS heptosyltransferase RfaF low > 80
Escherichia coli ECRC99 0.78 KEDOAH_08815 tkt transketolase 0.50 KEDOAH_12455 rfaF ADP-heptose--LPS heptosyltransferase RfaF — —
Klebsiella pneumoniae MKP103 0.78 KDGMDA_04465 transketolase 0.45 KDGMDA_07950 ADP-heptose--LPS heptosyltransferase RfaF — —
Klebsiella michiganensis M5al 0.78 BWI76_RS24015 transketolase 0.49 BWI76_RS27265 ADP-heptose--LPS heptosyltransferase II — —
Escherichia coli BW25113 0.78 b2935 tktA transketolase 1, thiamin-binding (NCBI) 0.50 b3620 rfaF ADP-heptose:LPS heptosyltransferase II (NCBI) 0.30 46
Escherichia coli ECRC100 0.78 OKFHMN_19325 tkt transketolase 0.50 OKFHMN_15695 rfaF ADP-heptose--LPS heptosyltransferase RfaF — —
Escherichia coli ECOR38 0.78 HEPCGN_18630 tkt transketolase 0.50 HEPCGN_14540 rfaF ADP-heptose--LPS heptosyltransferase RfaF low > 88
Escherichia coli ECRC62 0.78 BNILDI_09775 tkt transketolase 0.50 BNILDI_03935 rfaF ADP-heptose--LPS heptosyltransferase RfaF — —
Escherichia coli ECOR27 0.78 NOLOHH_11230 tkt transketolase 0.50 NOLOHH_07575 rfaF ADP-heptose--LPS heptosyltransferase RfaF low > 76
Escherichia coli Nissle 1917 0.78 ECOLIN_RS16330 transketolase 0.50 ECOLIN_RS20650 ADP-heptose--LPS heptosyltransferase RfaF low > 55
Enterobacter sp. TBS_079 0.78 MPMX20_03780 Transketolase 1 0.49 MPMX20_00113 ADP-heptose--LPS heptosyltransferase 2 — —
Enterobacter asburiae PDN3 0.78 EX28DRAFT_2974 transketolase, bacterial and yeast 0.50 EX28DRAFT_3872 lipopolysaccharide heptosyltransferase II — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.78 GFF3028 Transketolase (EC 2.2.1.1) 0.50 GFF391 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) low > 78
Dickeya dadantii 3937 0.78 DDA3937_RS18525 transketolase 0.50 DDA3937_RS20445 ADP-heptose--LPS heptosyltransferase RfaF — —
Erwinia tracheiphila HP pepo 2.2 0.78 IJEDHG_03385 tkt transketolase 0.48 IJEDHG_07865 rfaF ADP-heptose--LPS heptosyltransferase RfaF — —
Erwinia amylovora T8 0.78 OLJFJH_08645 transketolase 0.49 OLJFJH_05880 ADP-heptose--LPS heptosyltransferase RfaF — —
Erwinia tracheiphila SCR3 0.78 LU632_RS05520 tkt transketolase 0.48 LU632_RS21920 rfaF ADP-heptose--LPS heptosyltransferase RfaF — —
Dickeya dianthicola 67-19 0.77 HGI48_RS18450 transketolase 0.49 HGI48_RS00765 ADP-heptose--LPS heptosyltransferase RfaF — —
Dickeya dianthicola ME23 0.77 DZA65_RS19585 transketolase 0.49 DZA65_RS00820 ADP-heptose--LPS heptosyltransferase RfaF — —
Pectobacterium carotovorum WPP14 0.77 HER17_RS02680 transketolase 0.51 HER17_RS20775 ADP-heptose--LPS heptosyltransferase RfaF low > 75
Pantoea agglomerans CFBP13505 P0401 0.77 PagCFBP13505_RS16020 transketolase 0.48 PagCFBP13505_RS18660 ADP-heptose--LPS heptosyltransferase RfaF — —
Pantoea sp. MT58 0.77 IAI47_03680 transketolase 0.48 IAI47_00685 ADP-heptose--LPS heptosyltransferase RfaF — —
Serratia liquefaciens MT49 0.76 IAI46_21045 transketolase 0.49 IAI46_24740 ADP-heptose--LPS heptosyltransferase RfaF — —
Rahnella sp. WP5 0.76 EX31_RS21400 transketolase 0.50 EX31_RS14400 ADP-heptose--LPS heptosyltransferase RfaF low > 89
Pseudomonas sp. S08-1 0.73 OH686_10770 transketolase 0.53 OH686_09690 lipopolysaccharide heptosyltransferase II — —
Pseudomonas sp. SVBP6 0.72 COO64_RS17555 tkt transketolase 0.54 COO64_RS22830 waaF lipopolysaccharide heptosyltransferase II — —
Pseudomonas putida KT2440 0.72 PP_4965 transketolase A 0.55 PP_0341 ADP-heptose:LPS heptosyltransferase II — —
Pseudomonas sp. DMC3 0.72 GFF158 Transketolase 1 0.53 GFF3156 ADP-heptose--LPS heptosyltransferase 2 — —
Pseudomonas segetis P6 0.72 ACVTMO_RS03240 tkt transketolase 0.53 ACVTMO_RS20875 waaF lipopolysaccharide heptosyltransferase II — —
Pseudomonas sp. RS175 0.71 PFR28_04188 Transketolase 1 0.53 PFR28_05063 ADP-heptose--LPS heptosyltransferase 2 — —
Pseudomonas sp. BP01 0.71 JOY50_RS09870 tkt transketolase 0.54 JOY50_RS17820 waaF lipopolysaccharide heptosyltransferase II — —
Pseudomonas lactucae CFBP13502 0.71 GEMAOFIL_05420 Transketolase 1 0.53 GEMAOFIL_00682 ADP-heptose--LPS heptosyltransferase 2 — —
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_13680 transketolase 0.53 AO356_08950 ADP-heptose--LPS heptosyltransferase — —
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_4655 Transketolase (EC 2.2.1.1) 0.54 Pf6N2E2_3671 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) — —
Pseudomonas fluorescens SBW25 0.71 PFLU_RS28095 transketolase 0.53 PFLU_RS02285 lipopolysaccharide heptosyltransferase II — —
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS28095 transketolase 0.53 PFLU_RS02285 lipopolysaccharide heptosyltransferase II — —
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_07955 transketolase 0.53 AO353_12875 ADP-heptose--LPS heptosyltransferase — —
Pseudomonas orientalis W4I3 0.71 QF045_RS00840 transketolase 0.53 QF045_RS05290 lipopolysaccharide heptosyltransferase II — —
Pseudomonas stutzeri RCH2 0.71 Psest_0328 transketolase, bacterial and yeast 0.53 Psest_0451 lipopolysaccharide heptosyltransferase II — —
Pseudomonas aeruginosa PA14 0.71 IKLFDK_22685 transketolase 0.51 IKLFDK_28475 heptosyltransferase I — —
Pseudomonas aeruginosa MRSN321 0.71 DY961_RS22760 tkt;go_component=cytoplasm|0005737||IEA;go_function=transketolase transketolase 0.51 DY961_RS10865 waaF;go_function=lipopolysaccharide lipopolysaccharide heptosyltransferase II — —
Pseudomonas simiae WCS417 0.71 PS417_26440 transketolase 0.53 PS417_02230 ADP-heptose--LPS heptosyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.70 Pf1N1B4_2397 Transketolase (EC 2.2.1.1) 0.53 Pf1N1B4_1473 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) — —
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_1064 Transketolase (EC 2.2.1.1) 0.53 PfGW456L13_212 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) — —
Dechlorosoma suillum PS 0.65 Dsui_1561 transketolase 0.39 Dsui_3341 lipopolysaccharide heptosyltransferase II — —
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS01440 transketolase 0.39 ABZR87_RS08040 lipopolysaccharide heptosyltransferase II — —
Methylophilus sp. DMC18 0.63 GFF2501 Transketolase 1 0.49 GFF294 ADP-heptose--LPS heptosyltransferase 2 — —
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS17575 transketolase 0.39 RR42_RS03165 ADP-heptose--LPS heptosyltransferase — —
Desulfovibrio vulgaris Miyazaki F 0.62 DvMF_0976 transketolase (RefSeq) 0.11 DvMF_3136 lipopolysaccharide heptosyltransferase II (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.62 DVU2530 tkt transketolase (TIGR) 0.11 DVU1055 heptosyltransferase family protein (TIGR) — —
Ralstonia solanacearum UW163 0.62 UW163_RS07755 transketolase 0.38 UW163_RS01465 lipopolysaccharide heptosyltransferase II — —
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS05870 transketolase 0.38 RALBFv3_RS12145 lipopolysaccharide heptosyltransferase II — —
Ralstonia solanacearum GMI1000 0.61 RS_RS13760 transketolase 0.38 RS_RS02830 lipopolysaccharide heptosyltransferase II — —
Ralstonia solanacearum PSI07 0.61 RPSI07_RS11430 transketolase 0.37 RPSI07_RS21185 lipopolysaccharide heptosyltransferase II — —
Xanthobacter sp. DMC5 0.56 GFF2443 Transketolase 2 0.32 GFF367 ADP-heptose--LPS heptosyltransferase 2 — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS02950 transketolase 0.10 ABZR88_RS13940 glycosyltransferase family 9 protein low > 71
Rhodopseudomonas palustris CGA009 0.46 TX73_024110 transketolase 0.27 TX73_020655 lipopolysaccharide heptosyltransferase II — —
Azospirillum brasilense Sp245 0.45 AZOBR_RS09010 transketolase 0.08 AZOBR_RS06275 heptosyltransferase — —
Magnetospirillum magneticum AMB-1 0.43 AMB_RS06990 transketolase 0.12 AMB_RS02720 glycosyltransferase family 9 protein — —

Not shown: 18 genomes with orthologs for CSW01_02515 only; 13 genomes with orthologs for CSW01_01245 only