Conservation of cofitness between CSW01_01985 and CSW01_00595 in Vibrio cholerae E7946 ATCC 55056

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01985 tRNA dihydrouridine(20/20a) synthase DusA 1.0 CSW01_00595 heme biosynthesis protein HemY 0.42 16
Serratia liquefaciens MT49 0.77 IAI46_22970 tRNA dihydrouridine(20/20a) synthase DusA 0.26 IAI46_00680 protoheme IX biogenesis protein HemY low > 86
Erwinia amylovora T8 0.76 OLJFJH_03475 tRNA dihydrouridine(20/20a) synthase DusA 0.24 OLJFJH_06375 protoheme IX biogenesis protein HemY low > 58
Rahnella sp. WP5 0.76 EX31_RS11865 tRNA dihydrouridine(20/20a) synthase DusA 0.28 EX31_RS15130 protoheme IX biogenesis protein HemY low > 89
Pantoea sp. MT58 0.76 IAI47_17865 tRNA dihydrouridine(20/20a) synthase DusA 0.26 IAI47_18440 protoheme IX biogenesis protein HemY low > 76
Klebsiella michiganensis M5al 0.75 BWI76_RS01900 tRNA-dihydrouridine synthase A 0.26 BWI76_RS01165 protoheme IX biogenesis protein HemY low > 92
Pectobacterium carotovorum WPP14 0.75 HER17_RS03680 tRNA dihydrouridine(20/20a) synthase DusA 0.24 HER17_RS01300 protoheme IX biogenesis protein HemY low > 75
Escherichia coli ECRC98 0.75 JDDGAC_16580 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.27 JDDGAC_18090 hemY protoheme IX biogenesis protein HemY low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_03994 tRNA-dihydrouridine(20/20a) synthase 0.27 OHPLBJKB_04251 Protein HemY low > 73
Escherichia coli ECOR38 0.75 HEPCGN_11560 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.27 HEPCGN_13185 hemY protoheme IX biogenesis protein HemY low > 87
Escherichia coli ECOR27 0.75 NOLOHH_05195 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.27 NOLOHH_06610 hemY protoheme IX biogenesis protein HemY low > 75
Escherichia coli ECRC62 0.75 BNILDI_06330 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.27 BNILDI_04925 hemY protoheme IX biogenesis protein HemY low > 75
Escherichia coli ECRC99 0.75 KEDOAH_15205 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.27 KEDOAH_13685 hemY protoheme IX biogenesis protein HemY
Escherichia coli ECRC100 0.75 OKFHMN_12945 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.27 OKFHMN_14465 hemY protoheme IX biogenesis protein HemY low > 80
Escherichia coli ECRC102 0.75 NIAGMN_10790 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.27 NIAGMN_12220 hemY protoheme IX biogenesis protein HemY
Escherichia coli BL21 0.75 ECD_03921 tRNA-dihydrouridine synthase A 0.27 ECD_03677 putative protoheme IX synthesis protein low > 61
Escherichia coli BW25113 0.75 b4049 dusA tRNA-dihydrouridine synthase A (RefSeq) 0.27 b3802 hemY predicted protoheme IX synthesis protein (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF1418 tRNA dihydrouridine synthase A (EC 1.-.-.-) 0.24 GFF226 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) low > 78
Escherichia coli Nissle 1917 0.75 ECOLIN_RS23355 tRNA dihydrouridine(20/20a) synthase DusA 0.27 ECOLIN_RS21820 protoheme IX biogenesis protein HemY low > 55
Dickeya dadantii 3937 0.75 DDA3937_RS17480 tRNA dihydrouridine(20/20a) synthase DusA 0.25 DDA3937_RS19935 protoheme IX biogenesis protein HemY low > 74
Enterobacter asburiae PDN3 0.75 EX28DRAFT_4263 tRNA dihydrouridine synthase A 0.26 EX28DRAFT_4471 heme biosynthesis-associated TPR protein low > 76
Escherichia fergusonii Becca 0.75 EFB2_04556 tRNA-dihydrouridine(20/20a) synthase 0.27 EFB2_04836 Protein HemY low > 86
Dickeya dianthicola ME23 0.75 DZA65_RS18620 tRNA dihydrouridine(20/20a) synthase DusA 0.24 DZA65_RS21135 protoheme IX biogenesis protein HemY low > 75
Escherichia coli ECRC101 0.75 MCAODC_03455 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.27 MCAODC_04970 hemY protoheme IX biogenesis protein HemY low > 87
Enterobacter sp. TBS_079 0.75 MPMX20_00265 tRNA-dihydrouridine(20/20a) synthase 0.26 MPMX20_04473 Protein HemY low > 85
Dickeya dianthicola 67-19 0.74 HGI48_RS17540 tRNA dihydrouridine(20/20a) synthase DusA 0.24 HGI48_RS20090 protoheme IX biogenesis protein HemY low > 71
Shewanella sp. ANA-3 0.73 Shewana3_0718 tRNA-dihydrouridine synthase A (RefSeq) 0.11 Shewana3_0383 HemY domain-containing protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.72 SO3912 TIM-barrel protein, yjbN family (NCBI ptt file) 0.12 SO4316 hemY protein, putative (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.72 Shew_0536 tRNA-dihydrouridine synthase A (RefSeq) 0.12 Shew_0315 HemY domain-containing protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.71 Sama_3055 tRNA-dihydrouridine synthase A (RefSeq) 0.12 Sama_3257 HemY protein (RefSeq) low > 62
Erwinia tracheiphila SCR3 0.69 LU632_RS23765 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.24 LU632_RS24175 hemY protoheme IX biogenesis protein HemY low > 74
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_2018 tRNA dihydrouridine synthase A 0.21 B158DRAFT_0255 Uncharacterized enzyme of heme biosynthesis low > 40
Alteromonas macleodii MIT1002 0.58 MIT1002_03387 putative tRNA-dihydrouridine synthase 0.17 MIT1002_00099 putative protoheme IX biogenesis protein low > 70
Pseudomonas putida KT2440 0.58 PP_2169 tRNA-dihydrouridine synthase A 0.15 PP_0189 putative heme biosynthesis protein low > 96
Marinobacter adhaerens HP15 0.57 HP15_2240 tRNA-dihydrouridine synthase, TIM-barrel, YjbN 0.14 HP15_237 HemY domain protein low > 73
Pseudomonas sp. DMC3 0.57 GFF1327 tRNA-dihydrouridine(20/20a) synthase 0.15 GFF355 Protein HemY low > 89
Pseudomonas sp. BP01 0.56 JOY50_RS25205 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.15 JOY50_RS18735 heme biosynthesis protein HemY low > 84
Pseudomonas sp. S08-1 0.56 OH686_22745 tRNA-dihydrouridine(20/20a) synthase 0.11 OH686_13915 Uncharacterized protein EC-HemY in Proteobacteria (unrelated to HemY-type PPO in GramPositives) low > 80
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS22650 tRNA dihydrouridine(20/20a) synthase DusA 0.08 QEN71_RS24940 heme biosynthesis protein HemY 0.58 25
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.14 Psyr_0059 HemY, N-terminal:HemY, N-terminal:HemY, N-terminal low > 86
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.14 Psyr_0059 HemY, N-terminal:HemY, N-terminal:HemY, N-terminal low > 86
Pseudomonas simiae WCS417 0.55 PS417_07740 tRNA-dihydrouridine synthase A 0.15 PS417_27515 heme biosynthesis protein HemY low > 88
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.15 PFLU_RS29195 heme biosynthesis protein HemY low > 109
Pseudomonas fluorescens SBW25 0.55 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.15 PFLU_RS29195 heme biosynthesis protein HemY low > 109
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_57 tRNA dihydrouridine synthase A 0.13 Pf1N1B4_2188 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives)
Pseudomonas aeruginosa PA14 0.55 IKLFDK_14145 tRNA dihydrouridine(20/20a) synthase DusA 0.13 IKLFDK_27170 heme biosynthesis protein HemY low > 101
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS08700 tRNA-dihydrouridine synthase A 0.08 BPHYT_RS05240 heme biosynthesis protein HemY
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_2257 tRNA dihydrouridine synthase A 0.15 Pf6N2E2_4433 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) low > 103
Pseudomonas stutzeri RCH2 0.54 Psest_2706 tRNA dihydrouridine synthase A 0.14 Psest_3745 Uncharacterized enzyme of heme biosynthesis low > 67
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS17905 tRNA-dihydrouridine synthase A 0.08 HSERO_RS14650 porphyrin biosynthesis protein
Pseudomonas sp. SVBP6 0.54 COO64_RS09565 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.16 COO64_RS01180 heme biosynthesis protein HemY low > 93
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_02170 tRNA-dihydrouridine synthase A 0.15 AO356_12800 heme biosynthesis protein HemY low > 104
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_00295 tRNA-dihydrouridine synthase A 0.15 AO353_08975 heme biosynthesis protein HemY low > 101
Paraburkholderia graminis OAS925 0.54 ABIE53_001975 tRNA-dihydrouridine synthase A 0.08 ABIE53_001317 HemY protein low > 113
Pseudomonas sp. RS175 0.54 PFR28_01143 tRNA-dihydrouridine(20/20a) synthase 0.14 PFR28_04363 Protein HemY low > 88
Paraburkholderia bryophila 376MFSha3.1 0.53 H281DRAFT_00766 tRNA-U16,U17-dihydrouridine synthase 0.08 H281DRAFT_00200 HemY protein
Pseudomonas fluorescens GW456-L13 0.50 PfGW456L13_3987 tRNA dihydrouridine synthase A 0.14 PfGW456L13_859 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) low > 87

Not shown: 35 genomes with orthologs for CSW01_01985 only; 1 genomes with orthologs for CSW01_00595 only