Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_01985 | | tRNA dihydrouridine(20/20a) synthase DusA | 1.0 | CSW01_00595 | | heme biosynthesis protein HemY | 0.42 | 16 |
Serratia liquefaciens MT49 | 0.77 | IAI46_22970 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.26 | IAI46_00680 | | protoheme IX biogenesis protein HemY | low | > 86 |
Erwinia amylovora T8 | 0.76 | OLJFJH_03475 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.24 | OLJFJH_06375 | | protoheme IX biogenesis protein HemY | low | > 58 |
Rahnella sp. WP5 | 0.76 | EX31_RS11865 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.28 | EX31_RS15130 | | protoheme IX biogenesis protein HemY | low | > 89 |
Pantoea sp. MT58 | 0.76 | IAI47_17865 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.26 | IAI47_18440 | | protoheme IX biogenesis protein HemY | low | > 76 |
Klebsiella michiganensis M5al | 0.75 | BWI76_RS01900 | | tRNA-dihydrouridine synthase A | 0.26 | BWI76_RS01165 | | protoheme IX biogenesis protein HemY | low | > 92 |
Pectobacterium carotovorum WPP14 | 0.75 | HER17_RS03680 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.24 | HER17_RS01300 | | protoheme IX biogenesis protein HemY | low | > 75 |
Escherichia coli ECRC98 | 0.75 | JDDGAC_16580 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.27 | JDDGAC_18090 | hemY | protoheme IX biogenesis protein HemY | low | > 86 |
Escherichia coli HS(pFamp)R (ATCC 700891) | 0.75 | OHPLBJKB_03994 | | tRNA-dihydrouridine(20/20a) synthase | 0.27 | OHPLBJKB_04251 | | Protein HemY | low | > 73 |
Escherichia coli ECOR38 | 0.75 | HEPCGN_11560 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.27 | HEPCGN_13185 | hemY | protoheme IX biogenesis protein HemY | low | > 87 |
Escherichia coli ECOR27 | 0.75 | NOLOHH_05195 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.27 | NOLOHH_06610 | hemY | protoheme IX biogenesis protein HemY | low | > 75 |
Escherichia coli ECRC62 | 0.75 | BNILDI_06330 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.27 | BNILDI_04925 | hemY | protoheme IX biogenesis protein HemY | low | > 75 |
Escherichia coli ECRC99 | 0.75 | KEDOAH_15205 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.27 | KEDOAH_13685 | hemY | protoheme IX biogenesis protein HemY | — | — |
Escherichia coli ECRC100 | 0.75 | OKFHMN_12945 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.27 | OKFHMN_14465 | hemY | protoheme IX biogenesis protein HemY | low | > 80 |
Escherichia coli ECRC102 | 0.75 | NIAGMN_10790 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.27 | NIAGMN_12220 | hemY | protoheme IX biogenesis protein HemY | — | — |
Escherichia coli BL21 | 0.75 | ECD_03921 | | tRNA-dihydrouridine synthase A | 0.27 | ECD_03677 | | putative protoheme IX synthesis protein | low | > 61 |
Escherichia coli BW25113 | 0.75 | b4049 | dusA | tRNA-dihydrouridine synthase A (RefSeq) | 0.27 | b3802 | hemY | predicted protoheme IX synthesis protein (NCBI) | low | > 76 |
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.75 | GFF1418 | | tRNA dihydrouridine synthase A (EC 1.-.-.-) | 0.24 | GFF226 | | Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) | low | > 78 |
Escherichia coli Nissle 1917 | 0.75 | ECOLIN_RS23355 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.27 | ECOLIN_RS21820 | | protoheme IX biogenesis protein HemY | low | > 55 |
Dickeya dadantii 3937 | 0.75 | DDA3937_RS17480 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.25 | DDA3937_RS19935 | | protoheme IX biogenesis protein HemY | low | > 74 |
Enterobacter asburiae PDN3 | 0.75 | EX28DRAFT_4263 | | tRNA dihydrouridine synthase A | 0.26 | EX28DRAFT_4471 | | heme biosynthesis-associated TPR protein | low | > 76 |
Escherichia fergusonii Becca | 0.75 | EFB2_04556 | | tRNA-dihydrouridine(20/20a) synthase | 0.27 | EFB2_04836 | | Protein HemY | low | > 86 |
Dickeya dianthicola ME23 | 0.75 | DZA65_RS18620 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.24 | DZA65_RS21135 | | protoheme IX biogenesis protein HemY | low | > 75 |
Escherichia coli ECRC101 | 0.75 | MCAODC_03455 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.27 | MCAODC_04970 | hemY | protoheme IX biogenesis protein HemY | low | > 87 |
Enterobacter sp. TBS_079 | 0.75 | MPMX20_00265 | | tRNA-dihydrouridine(20/20a) synthase | 0.26 | MPMX20_04473 | | Protein HemY | low | > 85 |
Dickeya dianthicola 67-19 | 0.74 | HGI48_RS17540 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.24 | HGI48_RS20090 | | protoheme IX biogenesis protein HemY | low | > 71 |
Shewanella sp. ANA-3 | 0.73 | Shewana3_0718 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.11 | Shewana3_0383 | | HemY domain-containing protein (RefSeq) | low | > 73 |
Shewanella oneidensis MR-1 | 0.72 | SO3912 | | TIM-barrel protein, yjbN family (NCBI ptt file) | 0.12 | SO4316 | | hemY protein, putative (NCBI ptt file) | low | > 76 |
Shewanella loihica PV-4 | 0.72 | Shew_0536 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.12 | Shew_0315 | | HemY domain-containing protein (RefSeq) | low | > 60 |
Shewanella amazonensis SB2B | 0.71 | Sama_3055 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.12 | Sama_3257 | | HemY protein (RefSeq) | low | > 62 |
Erwinia tracheiphila SCR3 | 0.69 | LU632_RS23765 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.24 | LU632_RS24175 | hemY | protoheme IX biogenesis protein HemY | low | > 74 |
Kangiella aquimarina DSM 16071 | 0.63 | B158DRAFT_2018 | | tRNA dihydrouridine synthase A | 0.21 | B158DRAFT_0255 | | Uncharacterized enzyme of heme biosynthesis | low | > 40 |
Alteromonas macleodii MIT1002 | 0.58 | MIT1002_03387 | | putative tRNA-dihydrouridine synthase | 0.17 | MIT1002_00099 | | putative protoheme IX biogenesis protein | low | > 70 |
Pseudomonas putida KT2440 | 0.58 | PP_2169 | | tRNA-dihydrouridine synthase A | 0.15 | PP_0189 | | putative heme biosynthesis protein | low | > 96 |
Marinobacter adhaerens HP15 | 0.57 | HP15_2240 | | tRNA-dihydrouridine synthase, TIM-barrel, YjbN | 0.14 | HP15_237 | | HemY domain protein | low | > 73 |
Pseudomonas sp. DMC3 | 0.57 | GFF1327 | | tRNA-dihydrouridine(20/20a) synthase | 0.15 | GFF355 | | Protein HemY | low | > 89 |
Pseudomonas sp. BP01 | 0.56 | JOY50_RS25205 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.15 | JOY50_RS18735 | | heme biosynthesis protein HemY | low | > 84 |
Pseudomonas sp. S08-1 | 0.56 | OH686_22745 | | tRNA-dihydrouridine(20/20a) synthase | 0.11 | OH686_13915 | | Uncharacterized protein EC-HemY in Proteobacteria (unrelated to HemY-type PPO in GramPositives) | low | > 80 |
Paraburkholderia sabiae LMG 24235 | 0.56 | QEN71_RS22650 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.08 | QEN71_RS24940 | | heme biosynthesis protein HemY | 0.58 | 25 |
Pseudomonas syringae pv. syringae B728a ΔmexB | 0.56 | Psyr_1936 | | tRNA-U16,U17-dihydrouridine synthase | 0.14 | Psyr_0059 | | HemY, N-terminal:HemY, N-terminal:HemY, N-terminal | low | > 86 |
Pseudomonas syringae pv. syringae B728a | 0.56 | Psyr_1936 | | tRNA-U16,U17-dihydrouridine synthase | 0.14 | Psyr_0059 | | HemY, N-terminal:HemY, N-terminal:HemY, N-terminal | low | > 86 |
Pseudomonas simiae WCS417 | 0.55 | PS417_07740 | | tRNA-dihydrouridine synthase A | 0.15 | PS417_27515 | | heme biosynthesis protein HemY | low | > 88 |
Pseudomonas fluorescens SBW25-INTG | 0.55 | PFLU_RS07810 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.15 | PFLU_RS29195 | | heme biosynthesis protein HemY | low | > 109 |
Pseudomonas fluorescens SBW25 | 0.55 | PFLU_RS07810 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.15 | PFLU_RS29195 | | heme biosynthesis protein HemY | low | > 109 |
Pseudomonas fluorescens FW300-N1B4 | 0.55 | Pf1N1B4_57 | | tRNA dihydrouridine synthase A | 0.13 | Pf1N1B4_2188 | | Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) | — | — |
Pseudomonas aeruginosa PA14 | 0.55 | IKLFDK_14145 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.13 | IKLFDK_27170 | | heme biosynthesis protein HemY | low | > 101 |
Burkholderia phytofirmans PsJN | 0.54 | BPHYT_RS08700 | | tRNA-dihydrouridine synthase A | 0.08 | BPHYT_RS05240 | | heme biosynthesis protein HemY | — | — |
Pseudomonas fluorescens FW300-N2E2 | 0.54 | Pf6N2E2_2257 | | tRNA dihydrouridine synthase A | 0.15 | Pf6N2E2_4433 | | Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) | low | > 103 |
Pseudomonas stutzeri RCH2 | 0.54 | Psest_2706 | | tRNA dihydrouridine synthase A | 0.14 | Psest_3745 | | Uncharacterized enzyme of heme biosynthesis | low | > 67 |
Herbaspirillum seropedicae SmR1 | 0.54 | HSERO_RS17905 | | tRNA-dihydrouridine synthase A | 0.08 | HSERO_RS14650 | | porphyrin biosynthesis protein | — | — |
Pseudomonas sp. SVBP6 | 0.54 | COO64_RS09565 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.16 | COO64_RS01180 | | heme biosynthesis protein HemY | low | > 93 |
Pseudomonas fluorescens FW300-N2C3 | 0.54 | AO356_02170 | | tRNA-dihydrouridine synthase A | 0.15 | AO356_12800 | | heme biosynthesis protein HemY | low | > 104 |
Pseudomonas fluorescens FW300-N2E3 | 0.54 | AO353_00295 | | tRNA-dihydrouridine synthase A | 0.15 | AO353_08975 | | heme biosynthesis protein HemY | low | > 101 |
Paraburkholderia graminis OAS925 | 0.54 | ABIE53_001975 | | tRNA-dihydrouridine synthase A | 0.08 | ABIE53_001317 | | HemY protein | low | > 113 |
Pseudomonas sp. RS175 | 0.54 | PFR28_01143 | | tRNA-dihydrouridine(20/20a) synthase | 0.14 | PFR28_04363 | | Protein HemY | low | > 88 |
Paraburkholderia bryophila 376MFSha3.1 | 0.53 | H281DRAFT_00766 | | tRNA-U16,U17-dihydrouridine synthase | 0.08 | H281DRAFT_00200 | | HemY protein | — | — |
Pseudomonas fluorescens GW456-L13 | 0.50 | PfGW456L13_3987 | | tRNA dihydrouridine synthase A | 0.14 | PfGW456L13_859 | | Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) | low | > 87 |
Not shown: 35 genomes with orthologs for CSW01_01985 only; 1 genomes with orthologs for CSW01_00595 only